Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53778 * 113.61188 * 2 1 4 4 C 1.53787 * 87.08069 * 220.01710 * 3 2 1 5 5 C 1.53000 * 113.61270 * 139.97924 * 4 3 2 6 6 N 1.46901 * 109.46769 * 176.53026 * 5 4 3 7 7 C 1.46839 * 111.00222 * 294.21135 * 6 5 4 8 8 C 1.53034 * 109.52552 * 174.16216 * 7 6 5 9 9 C 1.53123 * 109.28182 * 59.17780 * 8 7 6 10 10 C 1.52994 * 109.52768 * 182.44125 * 9 8 7 11 11 N 1.46503 * 109.47228 * 294.68371 * 10 9 8 12 12 C 1.34774 * 119.99983 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99969 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.99941 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.47333 * 180.02562 * 14 12 11 16 16 C 1.76190 * 100.00265 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00051 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47261 * 60.00310 * 20 18 16 22 22 H 1.48501 * 109.46848 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47553 * 299.99913 * 20 18 16 24 24 C 1.53120 * 109.16070 * 302.35293 * 9 8 7 25 25 C 1.46849 * 110.99649 * 169.99929 * 6 5 4 26 26 C 1.53783 * 87.17078 * 25.39268 * 4 3 2 27 27 H 1.09000 * 109.47096 * 59.99932 * 1 2 3 28 28 H 1.09003 * 109.46840 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47010 * 299.99946 * 1 2 3 30 30 H 1.08994 * 112.90598 * 131.25496 * 2 1 3 31 31 H 1.09000 * 113.61215 * 105.47299 * 3 2 1 32 32 H 1.08993 * 113.69471 * 334.57361 * 3 2 1 33 33 H 1.08990 * 113.61394 * 270.80166 * 4 3 2 34 34 H 1.09002 * 109.47398 * 296.53321 * 5 4 3 35 35 H 1.09001 * 109.47194 * 56.53501 * 5 4 3 36 36 H 1.09006 * 109.46266 * 294.17473 * 7 6 5 37 37 H 1.09002 * 109.46276 * 54.14664 * 7 6 5 38 38 H 1.09006 * 109.50444 * 299.24199 * 8 7 6 39 39 H 1.09003 * 109.50687 * 179.12283 * 8 7 6 40 40 H 1.08999 * 109.57140 * 62.27961 * 9 8 7 41 41 H 1.09008 * 109.46824 * 54.68638 * 10 9 8 42 42 H 1.08996 * 109.47051 * 174.67984 * 10 9 8 43 43 H 0.96998 * 119.99849 * 0.02562 * 11 10 9 44 44 H 1.08998 * 109.47470 * 300.00174 * 14 12 11 45 45 H 1.08999 * 109.47446 * 60.00769 * 14 12 11 46 46 H 0.97002 * 120.00190 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.50142 * 297.71204 * 24 9 8 48 48 H 1.08998 * 109.50777 * 177.59101 * 24 9 8 49 49 H 1.08991 * 109.46839 * 305.85721 * 25 6 5 50 50 H 1.09005 * 109.46224 * 65.84006 * 25 6 5 51 51 H 1.09003 * 113.61584 * 89.15627 * 26 4 3 52 52 H 1.09000 * 113.61286 * 220.05881 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8661 -0.9876 5 6 3.5460 1.8476 -2.1067 6 7 4.6075 1.2733 -2.9443 7 6 5.8577 1.1334 -2.1871 8 6 6.8945 0.4014 -3.0422 9 6 7.1409 1.1955 -4.3280 10 6 8.1311 0.4382 -5.2150 11 7 9.4350 0.3773 -4.5497 12 6 10.4685 -0.2468 -5.1486 13 8 10.3193 -0.7577 -6.2384 14 6 11.8095 -0.3100 -4.4641 15 16 12.9811 -1.2058 -5.5134 16 6 14.4196 -1.1314 -4.4988 17 1 14.3805 -0.6312 -3.5424 18 6 15.6030 -1.7156 -4.9286 19 7 15.6504 -2.3257 -6.0940 20 14 17.1283 -1.6361 -3.8532 21 1 16.8526 -2.2989 -2.5532 22 1 18.2510 -2.3294 -4.5345 23 1 17.4942 -0.2164 -3.6172 24 6 5.8148 1.3688 -5.0737 25 6 4.8092 2.0727 -4.1596 26 6 2.1480 -0.1855 -1.3978 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9543 -0.6620 0.7548 31 1 2.5650 1.7024 0.9625 32 1 1.4955 2.1714 -0.4285 33 1 4.0717 0.4423 -0.5028 34 1 2.6630 2.0359 -2.7175 35 1 3.8935 2.7848 -1.6718 36 1 6.2358 2.1215 -1.9246 37 1 5.6695 0.5632 -1.2773 38 1 6.5229 -0.5920 -3.2937 39 1 7.8274 0.3115 -2.4856 40 1 7.5496 2.1750 -4.0797 41 1 7.7638 -0.5735 -5.3879 42 1 8.2337 0.9555 -6.1689 43 1 9.5542 0.7855 -3.6780 44 1 12.1772 0.7014 -4.2911 45 1 11.7066 -0.8273 -3.5102 46 1 16.4776 -2.7337 -6.3946 47 1 5.4261 0.3905 -5.3570 48 1 5.9761 1.9700 -5.9684 49 1 3.8596 2.1847 -4.6825 50 1 5.1925 3.0563 -3.8878 51 1 1.4970 0.1391 -2.2096 52 1 2.5686 -1.1776 -1.5622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -39.095724 kcal Electronic energy + Delta-G solvation = -26629.433304 eV Core-core repulsion = 22947.528599 eV Total energy + Delta-G solvation = -3681.904705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21626 -39.35998 -38.52100 -35.52392 -33.12837 -32.41370 -31.20250 -30.69058 -29.44646 -27.43234 -26.01953 -25.53037 -25.05514 -23.68079 -22.21555 -20.89305 -20.41016 -19.84517 -19.70352 -17.83392 -16.62151 -16.17784 -15.93313 -15.88073 -15.41459 -15.23008 -14.99053 -14.79168 -14.40861 -14.15238 -14.06242 -13.86993 -13.65088 -13.36184 -13.28880 -12.90229 -12.79136 -12.73842 -12.53974 -12.43511 -12.22526 -11.81631 -11.70643 -11.49067 -11.27854 -11.09101 -11.03211 -11.02906 -10.92820 -10.80716 -10.70076 -10.51922 -10.43305 -10.34486 -9.80580 -9.35588 -9.04909 -8.82260 -8.61907 -8.21843 -6.48135 -6.19992 -3.90498 3.07302 3.14825 3.24397 3.28637 3.33085 3.47164 3.76140 4.17568 4.22061 4.24265 4.31020 4.43504 4.44440 4.52047 4.60454 4.83476 4.95425 4.97260 5.00210 5.08003 5.14721 5.14979 5.16821 5.19308 5.27424 5.28988 5.32427 5.38107 5.39975 5.43552 5.47262 5.51159 5.58060 5.60364 5.65852 5.71061 5.73428 5.75958 5.84695 5.86807 5.92573 5.97807 6.00234 6.15910 6.17090 6.18096 6.67247 6.76989 6.77668 7.60566 7.75670 8.36415 8.66368 9.25065 10.87381 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.001599 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.996615 B =17508.694390 C =18227.445040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.133 4.133 4 C -0.107 4.107 5 C 0.067 3.933 6 N -0.535 5.535 7 C 0.054 3.946 8 C -0.112 4.112 9 C -0.099 4.099 10 C 0.127 3.873 11 N -0.738 5.738 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.109 4.109 25 C 0.058 3.942 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.396 0.604 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.031 0.969 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.128 10.472 12.066 34.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.171 4.171 4 C -0.126 4.126 5 C -0.061 4.061 6 N -0.260 5.260 7 C -0.073 4.073 8 C -0.150 4.150 9 C -0.118 4.118 10 C 0.003 3.997 11 N -0.393 5.393 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.147 4.147 25 C -0.070 4.070 26 C -0.157 4.157 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.230 0.770 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.050 0.950 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -30.416 9.048 9.940 33.254 hybrid contribution 1.510 1.697 2.665 3.502 sum -28.906 10.745 12.605 33.315 Atomic orbital electron populations 1.21714 0.94968 1.01636 1.01576 1.22518 0.95495 0.97376 0.98396 1.23030 0.97982 0.96836 0.99262 1.22540 0.97315 0.96944 0.95782 1.22093 0.94692 0.95217 0.94109 1.61907 1.06888 1.50697 1.06470 1.22139 0.89406 0.99070 0.96722 1.21665 0.98108 0.99862 0.95384 1.21441 0.95378 0.99283 0.95710 1.21299 0.82195 1.00660 0.95518 1.46016 1.10566 1.59657 1.23049 1.20292 0.85170 0.77177 0.85702 1.90702 1.83631 1.44611 1.20334 1.23529 0.96535 1.05742 1.04605 1.85394 1.02602 1.70269 1.25079 1.22833 0.96551 1.42361 1.06745 0.91005 1.24984 0.98559 0.94513 0.95469 1.70008 1.27740 1.33849 1.18690 0.86230 0.80907 0.78431 0.79958 1.19952 1.20802 1.19966 1.21555 0.93631 1.01978 0.97523 1.22059 0.99400 0.94287 0.91234 1.22996 0.97283 0.99370 0.96091 0.92683 0.92717 0.92758 0.89524 0.91737 0.90186 0.89075 0.90820 0.95036 0.95077 0.90502 0.90625 0.91324 0.90912 0.91511 0.91708 0.76984 0.89323 0.89288 0.92137 0.90543 0.91104 0.90743 0.95043 0.90227 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.71 37.16 0.36 -0.35 16 2 C -0.12 -0.67 4.36 -89.71 -0.39 -1.06 16 3 C -0.13 -0.72 7.20 -25.92 -0.19 -0.90 16 4 C -0.11 -0.66 3.69 -89.80 -0.33 -0.99 16 5 C 0.07 0.43 4.78 -3.82 -0.02 0.41 16 6 N -0.53 -4.01 4.66 -234.67 -1.09 -5.11 16 7 C 0.05 0.41 5.31 -3.84 -0.02 0.39 16 8 C -0.11 -0.92 5.22 -26.65 -0.14 -1.06 16 9 C -0.10 -0.84 2.29 -90.50 -0.21 -1.05 16 10 C 0.13 1.49 5.07 -4.04 -0.02 1.47 16 11 N -0.74 -9.92 5.31 -60.30 -0.32 -10.24 16 12 C 0.53 10.05 7.85 -10.99 -0.09 9.96 16 13 O -0.52 -12.01 15.86 5.55 0.09 -11.92 16 14 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 24 C -0.11 -0.84 5.38 -26.65 -0.14 -0.98 16 25 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 26 C -0.12 -0.75 7.20 -25.82 -0.19 -0.94 16 27 H 0.05 0.27 7.95 -51.93 -0.41 -0.15 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.09 0.61 6.19 -51.93 -0.32 0.29 16 34 H 0.07 0.46 7.72 -51.93 -0.40 0.06 16 35 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.56 6.09 -51.93 -0.32 0.24 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.55 7.27 -51.93 -0.38 0.17 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 4.19 7.69 -40.82 -0.31 3.87 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.48 8.01 -51.93 -0.42 0.07 16 50 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.08 0.50 7.75 -51.93 -0.40 0.10 16 52 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 418.27 15.07 6.30 6.30 Total: -1.00 -33.60 418.27 -12.18 -45.78 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -9.69 Total: -1.16 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.97 Total: -10.68 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.68 Total: -40.92 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.60 -12.18 -45.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.684 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds