Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 120.00094 * 2 1 4 4 H 1.48503 * 109.46932 * 270.00091 * 3 2 1 5 5 H 1.48504 * 109.47243 * 29.99465 * 3 2 1 6 6 H 1.48494 * 109.47438 * 150.00045 * 3 2 1 7 7 C 1.38803 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99607 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00102 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47430 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99566 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00184 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99970 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47330 * 179.97438 * 14 13 11 16 16 C 1.53513 * 114.17418 * 184.99664 * 15 14 13 17 17 N 1.47482 * 87.93588 * 220.33432 * 16 15 14 18 18 C 1.46894 * 110.99943 * 138.70119 * 17 16 15 19 19 C 1.53000 * 109.46930 * 169.99867 * 18 17 16 20 20 C 1.52997 * 109.47260 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47415 * 175.00324 * 20 19 18 22 22 C 1.53000 * 109.47233 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 22 21 25 25 C 1.52997 * 109.47232 * 295.00198 * 20 19 18 26 26 C 1.47484 * 87.83314 * 27.01028 * 17 16 15 27 27 H 0.96993 * 119.99936 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47276 * 60.00225 * 10 9 7 29 29 H 1.09003 * 109.47237 * 300.00433 * 10 9 7 30 30 H 0.97002 * 120.00043 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47464 * 59.99577 * 14 13 11 32 32 H 1.09003 * 109.47052 * 299.99945 * 14 13 11 33 33 H 1.08998 * 113.26118 * 317.95327 * 15 14 13 34 34 H 1.08995 * 113.47726 * 105.56509 * 16 15 14 35 35 H 1.09008 * 113.47334 * 335.10214 * 16 15 14 36 36 H 1.09001 * 109.47100 * 50.00664 * 18 17 16 37 37 H 1.08996 * 109.47763 * 289.99798 * 18 17 16 38 38 H 1.09000 * 109.47102 * 60.00468 * 19 18 17 39 39 H 1.09001 * 109.47254 * 300.00301 * 19 18 17 40 40 H 1.09002 * 109.47497 * 54.99973 * 20 19 18 41 41 H 1.08992 * 109.47063 * 59.99950 * 21 20 19 42 42 H 1.09004 * 109.46733 * 299.99664 * 21 20 19 43 43 H 1.09002 * 109.47398 * 59.99826 * 22 21 20 44 44 H 1.09001 * 109.47194 * 180.02562 * 22 21 20 45 45 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 47 47 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 48 48 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 49 49 H 1.09002 * 109.47153 * 299.99992 * 25 20 19 50 50 H 1.09001 * 109.47289 * 60.00075 * 25 20 19 51 51 H 1.08994 * 113.47401 * 87.75977 * 26 17 16 52 52 H 1.09000 * 113.47198 * 218.22286 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7281 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7910 -5.5024 0.0029 13 7 2.8441 -6.3432 0.0049 14 6 2.3304 -7.7151 0.0050 15 6 3.5024 -8.6986 0.0060 16 6 3.0872 -10.1715 -0.1159 17 7 4.1273 -10.4916 0.8795 18 6 3.6438 -11.4885 1.8440 19 6 4.8133 -11.9787 2.7001 20 6 4.3099 -13.0175 3.7043 21 6 5.4969 -13.5986 4.4753 22 6 4.9935 -14.6379 5.4791 23 6 4.0251 -13.9729 6.4593 24 6 2.8381 -13.3917 5.6884 25 6 3.3418 -12.3521 4.6845 26 6 3.9647 -9.1239 1.4067 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7306 0.8928 29 1 3.1244 -3.7321 -0.8872 30 1 3.8009 -6.1836 0.0051 31 1 1.7226 -7.8756 -0.8856 32 1 1.7209 -7.8748 0.8944 33 1 4.3106 -8.4058 -0.6643 34 1 3.2821 -10.5976 -1.1000 35 1 2.0743 -10.3676 0.2360 36 1 3.2079 -12.3314 1.3077 37 1 2.8881 -11.0363 2.4861 38 1 5.2493 -11.1359 3.2365 39 1 5.5691 -12.4311 2.0581 40 1 3.7954 -13.8177 3.1723 41 1 6.0113 -12.7985 5.0074 42 1 6.1866 -14.0728 3.7770 43 1 4.4793 -15.4380 4.9467 44 1 5.8391 -15.0515 6.0287 45 1 3.6668 -14.7130 7.1747 46 1 4.5393 -13.1728 6.9917 47 1 2.1484 -12.9176 6.3866 48 1 2.3239 -14.1919 5.1560 49 1 3.8562 -11.5519 5.2165 50 1 2.4961 -11.9381 4.1353 51 1 3.1862 -9.0405 2.1649 52 1 4.9034 -8.6622 1.7130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267674861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -39.973995 kcal Electronic energy + Delta-G solvation = -26225.168513 eV Core-core repulsion = 22543.225723 eV Total energy + Delta-G solvation = -3681.942790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 6.45 seconds Orbital eigenvalues (eV) -40.74046 -39.20263 -38.84530 -34.95020 -33.84698 -32.42530 -31.23105 -30.93801 -29.41131 -27.40167 -26.30788 -25.50536 -24.72692 -23.16391 -22.17151 -20.90136 -20.62347 -20.13713 -19.76218 -17.83683 -16.54258 -16.43428 -16.15139 -15.74872 -15.64292 -15.06042 -14.94033 -14.80233 -14.69236 -14.48998 -14.41246 -13.90418 -13.59882 -13.34275 -13.09941 -12.97035 -12.84637 -12.59180 -12.55690 -12.47121 -11.99294 -11.74272 -11.60813 -11.53327 -11.42240 -11.25221 -11.06114 -11.02194 -11.00398 -10.83863 -10.77158 -10.73362 -10.38285 -10.31890 -9.81345 -9.42947 -9.22137 -9.06643 -8.86882 -8.23177 -6.49637 -6.21371 -3.91884 3.03057 3.10563 3.22659 3.28153 3.32214 3.58580 3.68476 4.11822 4.20878 4.23697 4.27659 4.34728 4.44675 4.54555 4.72295 4.80616 4.87834 4.93404 4.95816 5.05711 5.06987 5.09816 5.11276 5.13841 5.19532 5.22736 5.25793 5.30157 5.33895 5.38927 5.44425 5.49624 5.58570 5.61249 5.62326 5.71405 5.72663 5.75716 5.79236 5.84027 5.86271 5.90183 5.95418 5.99331 6.02263 6.12500 6.14882 6.61449 6.70923 7.59958 7.71651 8.35598 8.61973 9.23986 10.86099 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.001496 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.042056 B =18714.408896 C =19259.393587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.132 3.868 15 C -0.127 4.127 16 C 0.007 3.993 17 N -0.473 5.473 18 C 0.017 3.983 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.117 4.117 26 C 0.003 3.997 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -30.128 7.677 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.008 3.992 15 C -0.146 4.146 16 C -0.122 4.122 17 N -0.195 5.195 18 C -0.111 4.111 19 C -0.142 4.142 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.244 -30.650 7.498 33.175 hybrid contribution 1.611 1.509 0.355 2.235 sum 11.855 -29.141 7.853 32.426 Atomic orbital electron populations 1.70018 1.05957 1.27447 1.46879 1.24991 0.95023 0.99023 0.94531 0.86166 0.79405 0.81563 0.78352 1.20264 1.20755 1.19705 1.22874 0.94921 0.91666 1.58939 0.90919 1.85392 1.04996 0.96341 1.96719 1.23528 1.06538 0.95396 1.04934 1.20322 0.86523 0.86326 0.75125 1.90703 1.15406 1.85649 1.47584 1.45980 1.09966 1.05354 1.77896 1.21231 0.95056 0.80571 1.02392 1.22995 0.98820 0.94488 0.98333 1.23782 0.95358 0.94402 0.98667 1.68884 1.37670 1.03152 1.09776 1.22778 0.97039 0.96579 0.94728 1.21489 0.97652 0.98400 0.96672 1.21160 0.96197 0.97573 0.95600 1.21567 0.97268 0.98457 0.97806 1.21533 0.98869 0.98049 0.97268 1.21540 0.96524 0.99995 0.97742 1.21546 0.97508 0.98648 0.98086 1.21662 0.98868 0.97987 0.96919 1.24034 1.01727 0.90609 0.96241 0.92190 0.89228 0.89207 0.76737 0.91237 0.91644 0.87279 0.89355 0.90941 0.91105 0.93294 0.91956 0.91296 0.91310 0.91977 0.92031 0.92112 0.92168 0.92247 0.92054 0.92089 0.92115 0.91961 0.91945 0.90917 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.84 7.85 -10.98 -0.09 9.75 16 12 O -0.52 -11.80 15.86 5.55 0.09 -11.71 16 13 N -0.74 -9.55 5.56 -60.29 -0.33 -9.89 16 14 C 0.13 1.46 5.58 -4.05 -0.02 1.44 16 15 C -0.13 -1.04 4.09 -90.09 -0.37 -1.40 16 16 C 0.01 0.06 7.26 -7.55 -0.05 0.00 16 17 N -0.47 -3.88 6.33 -244.62 -1.55 -5.43 16 18 C 0.02 0.12 4.57 -3.83 -0.02 0.11 16 19 C -0.10 -0.70 5.01 -26.73 -0.13 -0.83 16 20 C -0.09 -0.51 2.19 -90.62 -0.20 -0.71 16 21 C -0.11 -0.64 5.20 -26.73 -0.14 -0.78 16 22 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 23 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 24 C -0.12 -0.70 5.93 -26.71 -0.16 -0.86 16 25 C -0.12 -0.72 4.96 -26.71 -0.13 -0.85 16 26 C 0.00 0.02 7.28 -7.54 -0.05 -0.03 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.79 7.81 -51.93 -0.41 0.38 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.53 7.87 -51.92 -0.41 0.12 16 36 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.05 0.36 5.73 -51.93 -0.30 0.06 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 51 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 52 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 419.68 15.07 6.32 6.32 Total: -1.00 -33.53 419.68 -12.98 -46.51 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -9.74 Total: -1.22 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.26 Total: -11.64 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -1.15 Total: -40.78 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.53 -12.98 -46.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267674861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.534 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.45 seconds