Wall clock time and date at job start Sat Apr 11 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00216 * 2 1 4 4 C 1.34777 * 120.00064 * 180.02562 * 2 1 3 5 5 O 1.21285 * 119.99782 * 359.97438 * 4 2 1 6 6 C 1.50703 * 120.00384 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47299 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47093 * 179.97438 * 7 6 4 9 9 C 1.50692 * 109.46933 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00098 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00149 * 179.97438 * 11 9 8 13 13 C 1.53514 * 114.16836 * 204.99631 * 12 11 9 14 14 N 1.47482 * 87.93039 * 220.13972 * 13 12 11 15 15 C 1.46901 * 110.99764 * 138.70591 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46756 * 300.00019 * 23 21 19 27 27 C 1.47480 * 87.83699 * 27.01095 * 14 13 12 28 28 H 1.09001 * 109.46924 * 239.99921 * 1 2 3 29 29 H 1.09000 * 109.47058 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47168 * 119.99641 * 1 2 3 31 31 H 1.08997 * 109.47183 * 269.99779 * 3 2 1 32 32 H 1.08996 * 109.46853 * 30.00476 * 3 2 1 33 33 H 1.09005 * 109.47242 * 150.00319 * 3 2 1 34 34 H 1.08996 * 109.46972 * 59.99505 * 6 4 2 35 35 H 1.09001 * 109.46594 * 299.99623 * 6 4 2 36 36 H 1.09004 * 109.46993 * 59.99903 * 7 6 4 37 37 H 1.08997 * 109.47206 * 300.00046 * 7 6 4 38 38 H 1.08996 * 109.46856 * 60.00012 * 8 7 6 39 39 H 1.09001 * 109.46916 * 300.00004 * 8 7 6 40 40 H 0.96996 * 119.99685 * 359.97438 * 11 9 8 41 41 H 1.08999 * 113.25779 * 337.94959 * 12 11 9 42 42 H 1.08994 * 113.47382 * 105.36815 * 13 12 11 43 43 H 1.09003 * 113.47448 * 334.90723 * 13 12 11 44 44 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 45 45 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.47664 * 87.75895 * 27 14 13 49 49 H 1.08994 * 113.47488 * 218.22090 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1673 0.0001 7 6 4.1558 -2.6098 -0.0001 8 6 5.6859 -2.6098 -0.0001 9 6 6.1881 -4.0306 -0.0009 10 8 5.4000 -4.9524 -0.0009 11 7 7.5132 -4.2770 -0.0005 12 6 8.0015 -5.6582 -0.0007 13 6 9.4076 -5.8278 0.5915 14 7 9.6861 -6.7964 -0.4852 15 6 11.0395 -6.6090 -1.0248 16 6 11.3789 -7.7572 -1.9400 17 8 10.5724 -8.6442 -2.1248 18 7 12.5781 -7.7979 -2.5538 19 6 12.8866 -8.8423 -3.3867 20 1 12.1689 -9.6325 -3.5506 21 6 14.1231 -8.8846 -4.0191 22 7 14.9966 -7.9234 -3.8192 23 14 14.5433 -10.3071 -5.1545 24 1 13.5668 -10.3534 -6.2723 25 1 15.9112 -10.1175 -5.7004 26 1 14.4855 -11.5813 -4.3939 27 6 8.6869 -6.0869 -1.3057 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3792 1.5833 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0088 -0.6540 0.8905 35 1 4.0095 -0.6529 -0.8895 36 1 3.7928 -3.1234 -0.8903 37 1 3.7922 -3.1238 0.8896 38 1 6.0492 -2.0961 0.8899 39 1 6.0491 -2.0959 -0.8901 40 1 8.1435 -3.5397 -0.0002 41 1 7.2697 -6.3734 0.3749 42 1 9.4088 -6.2725 1.5867 43 1 10.0157 -4.9252 0.5317 44 1 11.7562 -6.5741 -0.2044 45 1 11.0814 -5.6741 -1.5838 46 1 13.2228 -7.0884 -2.4062 47 1 15.8597 -7.9528 -4.2610 48 1 9.1028 -5.2535 -1.8719 49 1 8.0775 -6.7511 -1.9184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268474147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:37 Heat of formation + Delta-G solvation = -69.546405 kcal Electronic energy + Delta-G solvation = -28150.811229 eV Core-core repulsion = 23921.292869 eV Total energy + Delta-G solvation = -4229.518361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66743 -40.26302 -39.18314 -37.69696 -36.04691 -34.65035 -34.19067 -33.78587 -31.25497 -30.34644 -29.44405 -28.08976 -26.41797 -25.90719 -25.41475 -23.76984 -22.44662 -20.62546 -20.09201 -19.64211 -19.23301 -17.89435 -17.51353 -17.13105 -16.77738 -16.51263 -16.26213 -16.09891 -15.83854 -15.23448 -14.86235 -14.56261 -14.42066 -14.19250 -13.87044 -13.67469 -13.44565 -13.26179 -13.23003 -13.11909 -12.98446 -12.65589 -12.62220 -12.38723 -12.28508 -12.13704 -11.74991 -11.60829 -11.47944 -11.17627 -11.11682 -11.03280 -10.63832 -10.42269 -10.27074 -10.19080 -9.98009 -9.46968 -9.20427 -9.14739 -8.83312 -8.20248 -7.93852 -6.39642 -3.80278 2.22931 2.47415 2.49075 2.94602 3.22122 3.27211 3.32276 3.92103 4.01074 4.05628 4.23643 4.38089 4.42230 4.45972 4.58661 4.62720 4.74165 4.75201 4.82615 4.94720 4.99100 5.01331 5.05078 5.10971 5.16937 5.19466 5.21829 5.32250 5.33712 5.34267 5.60783 5.65926 5.67963 5.78402 5.90366 5.90929 6.06965 6.10028 6.24823 6.35670 6.51480 6.83076 7.12106 7.32280 7.57237 7.75054 8.07818 8.08261 8.64574 9.20808 9.56627 10.09466 10.78214 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.001384 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.404305 B =20232.841891 C =20369.969551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.629 5.629 3 C 0.077 3.923 4 C 0.509 3.491 5 O -0.530 6.530 6 C -0.138 4.138 7 C -0.091 4.091 8 C -0.141 4.141 9 C 0.512 3.488 10 O -0.531 6.531 11 N -0.721 5.721 12 C 0.118 3.882 13 C -0.014 4.014 14 N -0.435 5.435 15 C 0.012 3.988 16 C 0.446 3.554 17 O -0.573 6.573 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.008 4.008 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.400 0.600 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.069 0.931 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.325 26.221 10.593 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.364 5.364 3 C -0.066 4.066 4 C 0.297 3.703 5 O -0.406 6.406 6 C -0.178 4.178 7 C -0.130 4.130 8 C -0.181 4.181 9 C 0.298 3.702 10 O -0.407 6.407 11 N -0.373 5.373 12 C 0.012 3.988 13 C -0.144 4.144 14 N -0.157 5.157 15 C -0.121 4.121 16 C 0.231 3.769 17 O -0.456 6.456 18 N -0.204 5.204 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.546 5.546 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.234 0.766 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.610 23.660 10.492 33.086 hybrid contribution 1.440 1.269 -0.753 2.062 sum -19.170 24.929 9.739 32.921 Atomic orbital electron populations 1.21618 0.79126 1.02146 1.02514 1.47846 1.07193 1.06557 1.74804 1.21869 0.97489 0.85185 1.02090 1.20805 0.90526 0.83020 0.75916 1.90755 1.70461 1.30891 1.48455 1.21727 0.91723 1.00111 1.04271 1.21100 0.92278 0.94187 1.05408 1.21687 0.97705 0.94244 1.04433 1.20704 0.82220 0.91668 0.75604 1.90759 1.55118 1.46462 1.48341 1.46013 1.07176 1.08424 1.75688 1.22684 0.95255 0.83629 0.97225 1.24315 0.94846 0.96120 0.99075 1.68793 1.03283 1.38469 1.05140 1.22496 0.92311 0.98043 0.99215 1.19654 0.83800 0.88560 0.84932 1.90539 1.49268 1.39967 1.65788 1.41852 1.13836 1.23551 1.41197 1.19661 1.00331 1.01967 1.20834 0.88000 1.25234 0.95572 0.98449 0.98639 1.69606 1.07806 1.32866 1.44308 0.85924 0.77339 0.80934 0.80068 1.19940 1.20996 1.19884 1.24398 0.95293 0.97497 0.96670 0.92103 0.90759 0.92070 0.92377 0.90930 0.90691 0.88758 0.88728 0.90221 0.90279 0.88784 0.88724 0.76617 0.85323 0.88926 0.91174 0.89266 0.92276 0.77592 0.91897 0.91255 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.16 59.84 0.61 1.09 16 2 N -0.63 -3.82 3.27 -189.52 -0.62 -4.44 16 3 C 0.08 0.16 10.21 59.85 0.61 0.77 16 4 C 0.51 4.46 7.67 -10.98 -0.08 4.38 16 5 O -0.53 -7.20 15.98 5.55 0.09 -7.11 16 6 C -0.14 -0.74 4.25 -27.88 -0.12 -0.86 16 7 C -0.09 -0.76 3.79 -26.73 -0.10 -0.87 16 8 C -0.14 -0.86 5.70 -27.89 -0.16 -1.02 16 9 C 0.51 5.41 7.83 -10.99 -0.09 5.32 16 10 O -0.53 -8.30 15.57 5.56 0.09 -8.22 16 11 N -0.72 -6.53 5.39 -53.54 -0.29 -6.82 16 12 C 0.12 1.43 4.59 -67.72 -0.31 1.12 16 13 C -0.01 -0.16 7.45 -7.54 -0.06 -0.21 16 14 N -0.43 -7.26 5.82 -246.09 -1.43 -8.69 16 15 C 0.01 0.20 5.30 -4.97 -0.03 0.18 16 16 C 0.45 10.78 7.85 -10.98 -0.09 10.69 16 17 O -0.57 -16.22 16.01 5.55 0.09 -16.13 16 18 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 19 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 23 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.01 -0.12 7.53 -7.54 -0.06 -0.18 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.19 7.79 -51.93 -0.40 -0.22 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.07 0.06 7.92 -51.93 -0.41 -0.35 16 33 H 0.07 0.06 6.44 -51.93 -0.33 -0.28 16 34 H 0.09 0.27 7.40 -51.93 -0.38 -0.11 16 35 H 0.09 0.31 8.11 -51.93 -0.42 -0.11 16 36 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 37 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.40 2.29 8.75 -40.82 -0.36 1.93 16 41 H 0.13 1.84 7.45 -51.93 -0.39 1.45 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 44 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 45 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 46 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.07 0.92 7.42 -51.93 -0.39 0.53 16 49 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 409.82 15.07 6.18 6.18 Total: -1.00 -39.29 409.82 -8.29 -47.58 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.92 Total: 7.57 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.11 Total: 12.32 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -1.68 Total: -58.47 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: 0.26 Total: -31.46 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -39.29 -8.29 -47.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268474147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.964 kcal (2) G-P(sol) polarization free energy of solvation -39.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds