Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00216 * 2 1 4 4 C 1.34777 * 120.00064 * 180.02562 * 2 1 3 5 5 O 1.21285 * 119.99782 * 359.97438 * 4 2 1 6 6 C 1.50703 * 120.00384 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47299 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47093 * 179.97438 * 7 6 4 9 9 C 1.50692 * 109.46933 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00098 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00149 * 179.97438 * 11 9 8 13 13 C 1.53514 * 114.16836 * 204.99631 * 12 11 9 14 14 N 1.47482 * 87.93039 * 220.13972 * 13 12 11 15 15 C 1.46901 * 110.99764 * 138.70591 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46756 * 300.00019 * 23 21 19 27 27 C 1.47480 * 87.83699 * 27.01095 * 14 13 12 28 28 H 1.09001 * 109.46924 * 239.99921 * 1 2 3 29 29 H 1.09000 * 109.47058 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47168 * 119.99641 * 1 2 3 31 31 H 1.08997 * 109.47183 * 269.99779 * 3 2 1 32 32 H 1.08996 * 109.46853 * 30.00476 * 3 2 1 33 33 H 1.09005 * 109.47242 * 150.00319 * 3 2 1 34 34 H 1.08996 * 109.46972 * 59.99505 * 6 4 2 35 35 H 1.09001 * 109.46594 * 299.99623 * 6 4 2 36 36 H 1.09004 * 109.46993 * 59.99903 * 7 6 4 37 37 H 1.08997 * 109.47206 * 300.00046 * 7 6 4 38 38 H 1.08996 * 109.46856 * 60.00012 * 8 7 6 39 39 H 1.09001 * 109.46916 * 300.00004 * 8 7 6 40 40 H 0.96996 * 119.99685 * 359.97438 * 11 9 8 41 41 H 1.08999 * 113.25779 * 337.94959 * 12 11 9 42 42 H 1.08994 * 113.47382 * 105.36815 * 13 12 11 43 43 H 1.09003 * 113.47448 * 334.90723 * 13 12 11 44 44 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 45 45 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.47664 * 87.75895 * 27 14 13 49 49 H 1.08994 * 113.47488 * 218.22090 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1673 0.0001 7 6 4.1558 -2.6098 -0.0001 8 6 5.6859 -2.6098 -0.0001 9 6 6.1881 -4.0306 -0.0009 10 8 5.4000 -4.9524 -0.0009 11 7 7.5132 -4.2770 -0.0005 12 6 8.0015 -5.6582 -0.0007 13 6 9.4076 -5.8278 0.5915 14 7 9.6861 -6.7964 -0.4852 15 6 11.0395 -6.6090 -1.0248 16 6 11.3789 -7.7572 -1.9400 17 8 10.5724 -8.6442 -2.1248 18 7 12.5781 -7.7979 -2.5538 19 6 12.8866 -8.8423 -3.3867 20 1 12.1689 -9.6325 -3.5506 21 6 14.1231 -8.8846 -4.0191 22 7 14.9966 -7.9234 -3.8192 23 14 14.5433 -10.3071 -5.1545 24 1 13.5668 -10.3534 -6.2723 25 1 15.9112 -10.1175 -5.7004 26 1 14.4855 -11.5813 -4.3939 27 6 8.6869 -6.0869 -1.3057 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3792 1.5833 -1.0276 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0088 -0.6540 0.8905 35 1 4.0095 -0.6529 -0.8895 36 1 3.7928 -3.1234 -0.8903 37 1 3.7922 -3.1238 0.8896 38 1 6.0492 -2.0961 0.8899 39 1 6.0491 -2.0959 -0.8901 40 1 8.1435 -3.5397 -0.0002 41 1 7.2697 -6.3734 0.3749 42 1 9.4088 -6.2725 1.5867 43 1 10.0157 -4.9252 0.5317 44 1 11.7562 -6.5741 -0.2044 45 1 11.0814 -5.6741 -1.5838 46 1 13.2228 -7.0884 -2.4062 47 1 15.8597 -7.9528 -4.2610 48 1 9.1028 -5.2535 -1.8719 49 1 8.0775 -6.7511 -1.9184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268474147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -103.987658 kcal Electronic energy + Delta-G solvation = -28152.304714 eV Core-core repulsion = 23921.292869 eV Total energy + Delta-G solvation = -4231.011845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.71522 -40.90908 -40.27832 -39.45408 -36.58341 -35.96905 -35.27248 -35.06809 -33.28854 -31.41973 -30.21269 -28.48853 -27.38251 -26.95999 -26.68730 -25.12728 -23.22752 -21.50005 -21.16528 -20.89675 -20.16773 -19.90597 -18.18469 -17.92706 -17.78402 -17.46292 -17.30096 -16.85517 -16.61876 -16.54187 -16.41007 -15.94832 -15.74011 -15.18513 -15.14236 -14.77721 -14.37603 -14.24816 -13.97234 -13.83957 -13.67919 -13.50998 -13.50077 -13.47449 -13.10058 -13.02029 -12.82258 -12.72380 -12.65803 -12.44877 -12.32098 -12.28445 -12.12168 -11.83639 -11.69182 -11.50229 -11.03339 -10.81050 -10.39487 -10.06450 -10.00887 -9.76319 -9.68368 -8.46876 -5.95410 1.39061 1.40869 1.51548 1.63044 1.66908 2.00106 2.06369 2.20708 2.30726 2.90108 3.19279 3.31915 3.53625 3.60086 3.73642 3.81958 4.06736 4.09014 4.10215 4.26057 4.28457 4.32452 4.39911 4.41425 4.48387 4.53511 4.60948 4.62912 4.69922 4.70858 4.78661 4.79233 4.82985 4.88711 4.99571 5.03140 5.19053 5.33577 5.38418 5.40579 5.48815 5.54919 5.88449 6.07684 6.37453 6.61208 6.61945 7.13560 7.18747 7.34089 7.56921 8.14638 8.70222 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.001384 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.404305 B =20232.841891 C =20369.969551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.627 5.627 3 C 0.068 3.932 4 C 0.494 3.506 5 O -0.597 6.597 6 C -0.126 4.126 7 C -0.090 4.090 8 C -0.125 4.125 9 C 0.503 3.497 10 O -0.594 6.594 11 N -0.702 5.702 12 C 0.129 3.871 13 C 0.005 3.995 14 N -0.479 5.479 15 C 0.027 3.973 16 C 0.438 3.562 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.074 0.926 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.274 1.274 25 H -0.267 1.267 26 H -0.274 1.274 27 C -0.012 4.012 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.422 0.578 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.092 0.908 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.266 30.485 11.303 36.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.360 5.360 3 C -0.073 4.073 4 C 0.284 3.716 5 O -0.478 6.478 6 C -0.165 4.165 7 C -0.129 4.129 8 C -0.164 4.164 9 C 0.292 3.708 10 O -0.474 6.474 11 N -0.355 5.355 12 C 0.022 3.978 13 C -0.124 4.124 14 N -0.202 5.202 15 C -0.105 4.105 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.467 4.467 20 H 0.092 0.908 21 C -0.209 4.209 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.191 1.191 26 H -0.199 1.199 27 C -0.142 4.142 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.232 0.768 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.495 28.051 11.220 35.423 hybrid contribution 0.728 -0.017 -0.964 1.208 sum -17.767 28.034 10.256 34.738 Atomic orbital electron populations 1.21687 0.79379 1.03838 1.01011 1.48042 1.07528 1.07391 1.73017 1.22196 0.98289 0.83400 1.03449 1.21577 0.92187 0.82814 0.75027 1.90727 1.71925 1.33381 1.51781 1.21729 0.88986 0.98314 1.07449 1.20983 0.94231 0.95753 1.01906 1.21710 0.95450 0.91278 1.07996 1.21647 0.82000 0.93104 0.74014 1.90751 1.56721 1.48767 1.51149 1.45793 1.07305 1.07691 1.74690 1.22213 0.95175 0.84875 0.95521 1.24321 0.93969 0.96408 0.97669 1.68704 1.02874 1.41419 1.07183 1.22377 0.93556 0.95764 0.98788 1.20920 0.82449 0.89595 0.84543 1.90506 1.50566 1.42477 1.67410 1.41904 1.14684 1.23218 1.41308 1.19598 1.00870 1.02932 1.23267 0.90818 1.25963 0.94847 1.00729 0.99339 1.69650 1.08039 1.33713 1.44478 0.85038 0.77697 0.77840 0.78047 1.19929 1.19127 1.19916 1.24434 0.95104 0.97233 0.97419 0.93574 0.87336 0.93796 0.91207 0.89289 0.88604 0.85020 0.85525 0.94217 0.93715 0.84595 0.85218 0.73920 0.88352 0.88153 0.87139 0.86667 0.89147 0.76841 0.91239 0.89051 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.16 127.77 1.30 2.19 16 2 N -0.63 -6.77 3.27 -871.89 -2.85 -9.62 16 3 C 0.07 0.04 10.21 127.77 1.30 1.34 16 4 C 0.49 8.58 7.67 87.66 0.67 9.26 16 5 O -0.60 -17.72 15.98 -3.05 -0.05 -17.77 16 6 C -0.13 -1.02 4.25 29.85 0.13 -0.89 16 7 C -0.09 -1.48 3.79 30.59 0.12 -1.36 16 8 C -0.13 -1.12 5.70 29.85 0.17 -0.95 16 9 C 0.50 10.11 7.83 87.65 0.69 10.80 16 10 O -0.59 -19.67 15.57 -3.03 -0.05 -19.72 16 11 N -0.70 -10.94 5.39 -441.69 -2.38 -13.32 16 12 C 0.13 3.03 4.59 45.45 0.21 3.24 16 13 C 0.01 0.11 7.45 83.58 0.62 0.73 16 14 N -0.48 -15.53 5.82 -932.48 -5.43 -20.96 16 15 C 0.03 0.89 5.30 85.56 0.45 1.34 16 16 C 0.44 21.40 7.85 87.66 0.69 22.09 16 17 O -0.62 -36.76 16.01 -3.07 -0.05 -36.80 16 18 N -0.57 -29.68 5.29 -306.98 -1.62 -31.31 16 19 C -0.34 -19.54 9.68 84.04 0.81 -18.73 16 20 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.47 5.50 84.92 0.47 -0.01 16 22 N -0.92 -49.26 13.05 21.66 0.28 -48.97 16 23 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 C -0.01 -0.34 7.53 83.58 0.63 0.29 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 0.35 7.79 -2.39 -0.02 0.34 16 30 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.09 -0.20 7.92 -2.39 -0.02 -0.22 16 33 H 0.10 -0.32 6.44 -2.38 -0.02 -0.34 16 34 H 0.13 0.12 7.40 -2.39 -0.02 0.10 16 35 H 0.13 0.26 8.11 -2.39 -0.02 0.24 16 36 H 0.04 0.95 8.06 -2.38 -0.02 0.93 16 37 H 0.04 1.02 8.06 -2.39 -0.02 1.00 16 38 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.42 2.80 8.75 -92.71 -0.81 1.99 16 41 H 0.10 2.97 7.45 -2.39 -0.02 2.95 16 42 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 43 H 0.11 1.40 7.90 -2.39 -0.02 1.38 16 44 H 0.12 3.22 8.08 -2.39 -0.02 3.20 16 45 H 0.09 2.44 7.30 -2.39 -0.02 2.42 16 46 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 47 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 48 H 0.09 2.23 7.42 -2.39 -0.02 2.21 16 49 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -96.11 409.82 -2.43 -98.54 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.57 Total: 25.07 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 8.26 Total: 29.35 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -12.00 Total: -124.18 kcal Atomic # 8 Polarization: -74.15 SS G_CDS: -0.15 Total: -74.29 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -96.11 -2.43 -98.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268474147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.445 kcal (2) G-P(sol) polarization free energy of solvation -96.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds