Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99699 * 2 1 4 4 H 1.48500 * 109.47137 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47207 * 30.00400 * 3 2 1 6 6 H 1.48498 * 109.47244 * 150.00334 * 3 2 1 7 7 C 1.38796 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00012 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00116 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00061 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47078 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99969 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99932 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00050 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47042 * 34.99926 * 14 13 11 16 16 C 1.53002 * 109.47317 * 274.99997 * 14 13 11 17 17 C 1.52997 * 109.46978 * 300.00132 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 20 20 C 1.52996 * 109.47368 * 155.00010 * 14 13 11 21 21 H 1.09001 * 109.47372 * 180.02562 * 20 14 13 22 22 C 1.53001 * 109.47302 * 299.99898 * 20 14 13 23 23 N 1.46894 * 109.47806 * 184.99722 * 22 20 14 24 24 C 1.46895 * 111.00595 * 179.97438 * 23 22 20 25 25 C 1.53002 * 109.47337 * 179.97438 * 24 23 22 26 26 C 1.53775 * 113.61601 * 272.50178 * 25 24 23 27 27 C 1.53780 * 87.07786 * 220.01943 * 26 25 24 28 28 C 1.53773 * 87.08386 * 25.43337 * 27 26 25 29 29 H 0.97005 * 120.00652 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46728 * 60.00309 * 10 9 7 31 31 H 1.08994 * 109.47168 * 299.99798 * 10 9 7 32 32 H 0.96994 * 120.00306 * 0.02562 * 13 11 10 33 33 H 1.09002 * 109.47097 * 59.99933 * 16 14 13 34 34 H 1.09001 * 109.47142 * 179.97438 * 16 14 13 35 35 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 36 36 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 38 38 H 1.08996 * 109.46884 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.47153 * 180.02562 * 19 18 17 40 40 H 1.09001 * 109.46832 * 60.00321 * 19 18 17 41 41 H 1.08998 * 109.46991 * 305.00154 * 22 20 14 42 42 H 1.09008 * 109.46864 * 64.99913 * 22 20 14 43 43 H 1.00902 * 110.99854 * 56.04216 * 23 22 20 44 44 H 1.08999 * 109.47040 * 300.00362 * 24 23 22 45 45 H 1.09006 * 109.46888 * 60.00201 * 24 23 22 46 46 H 1.08996 * 112.84610 * 43.80663 * 25 24 23 47 47 H 1.09000 * 113.61214 * 334.56406 * 26 25 24 48 48 H 1.08993 * 113.62020 * 105.47171 * 26 25 24 49 49 H 1.09002 * 113.61804 * 270.87877 * 27 26 25 50 50 H 1.09007 * 113.68924 * 139.99349 * 27 26 25 51 51 H 1.09007 * 113.61358 * 220.02174 * 28 27 26 52 52 H 1.09004 * 113.61690 * 89.11541 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5731 -3.2323 -0.0021 12 8 6.3441 -2.2960 -0.0035 13 7 6.0458 -4.4944 -0.0026 14 6 7.4908 -4.7355 -0.0032 15 1 7.9879 -3.9650 0.5863 16 6 8.0141 -4.6949 -1.4404 17 6 7.3164 -5.7763 -2.2678 18 6 7.6045 -7.1500 -1.6587 19 6 7.0813 -7.1905 -0.2215 20 6 7.7791 -6.1090 0.6059 21 1 8.8542 -6.2882 0.6059 22 6 7.2559 -6.1496 2.0431 23 7 7.6374 -7.4234 2.6675 24 6 7.1513 -7.4977 4.0517 25 6 7.5666 -8.8356 4.6669 26 6 6.5615 -9.9705 4.4094 27 6 6.8195 -10.4213 5.8568 28 6 7.2111 -8.9650 6.1574 29 1 -0.4851 0.8400 0.0004 30 1 3.6434 -3.4316 -0.8907 31 1 3.6442 -3.4312 0.8893 32 1 5.4293 -5.2432 -0.0026 33 1 7.8088 -3.7163 -1.8743 34 1 9.0894 -4.8738 -1.4407 35 1 6.2412 -5.5970 -2.2674 36 1 7.6889 -5.7471 -3.2918 37 1 8.6797 -7.3292 -1.6592 38 1 7.1078 -7.9203 -2.2484 39 1 7.2870 -8.1689 0.2126 40 1 6.0062 -7.0111 -0.2211 41 1 7.6861 -5.3239 2.6098 42 1 6.1696 -6.0590 2.0370 43 1 8.6362 -7.5608 2.6274 44 1 7.5812 -6.6814 4.6321 45 1 6.0643 -7.4163 4.0599 46 1 8.5982 -9.1041 4.4392 47 1 5.5437 -9.6213 4.2358 48 1 6.8967 -10.6895 3.6619 49 1 7.6464 -11.1248 5.9543 50 1 5.9213 -10.7489 6.3803 51 1 8.0708 -8.8720 6.8211 52 1 6.3708 -8.3408 6.4617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268765924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -66.092761 kcal Electronic energy + Delta-G solvation = -27589.711163 eV Core-core repulsion = 23906.635778 eV Total energy + Delta-G solvation = -3683.075385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39472 -39.87626 -39.20624 -36.42368 -34.73003 -34.64788 -32.36951 -31.74623 -29.86666 -28.41210 -27.84700 -26.42421 -25.28068 -23.62827 -22.96939 -22.36728 -21.96320 -20.22577 -19.99714 -19.91968 -18.03809 -17.20068 -17.03708 -16.86370 -16.62333 -16.51242 -15.91822 -15.85367 -15.70842 -15.24508 -15.03805 -14.91816 -14.87517 -14.58454 -14.15625 -13.81133 -13.64986 -13.36188 -13.27911 -13.18154 -13.08529 -13.01943 -12.82855 -12.81292 -12.59330 -12.54991 -12.25469 -11.88352 -11.82758 -11.46250 -11.37116 -11.28600 -11.18309 -11.09144 -10.97726 -10.93675 -10.89034 -10.54781 -10.01999 -9.32402 -9.00449 -8.52628 -6.23275 0.98205 1.30144 1.45704 1.55328 1.59302 2.22743 2.28448 2.71570 2.85482 3.07723 3.71629 3.72931 3.82100 3.83743 3.87185 3.91605 3.99093 4.09262 4.18284 4.20873 4.30673 4.40073 4.44702 4.51566 4.53952 4.57974 4.59536 4.67032 4.69480 4.72613 4.80837 4.91046 4.92111 4.95379 5.04632 5.05880 5.11928 5.17112 5.19330 5.27424 5.31607 5.36922 5.42819 5.52629 5.53620 5.63813 5.66324 5.69674 6.04298 6.10284 6.48100 6.52185 6.92483 7.22217 8.59839 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.002496 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.652562 B =11213.349514 C =13016.557115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.061 0.939 9 S -0.173 6.173 10 C -0.112 4.112 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.703 5.703 14 C 0.153 3.847 15 H 0.065 0.935 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.101 4.101 20 C -0.075 4.075 21 H 0.099 0.901 22 C 0.066 3.934 23 N -0.678 5.678 24 C 0.069 3.931 25 C -0.101 4.101 26 C -0.127 4.127 27 C -0.144 4.144 28 C -0.140 4.140 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.410 0.590 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.063 0.937 43 H 0.346 0.654 44 H 0.023 0.977 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.296 -23.870 5.471 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.079 0.921 9 S 0.053 5.947 10 C -0.263 4.263 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.357 5.357 14 C 0.048 3.952 15 H 0.084 0.916 16 C -0.165 4.165 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.094 4.094 21 H 0.118 0.882 22 C -0.063 4.063 23 N -0.309 5.309 24 C -0.060 4.060 25 C -0.120 4.120 26 C -0.165 4.165 27 C -0.181 4.181 28 C -0.178 4.178 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.164 0.836 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.084 0.916 51 H 0.089 0.911 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.863 -22.598 5.223 31.196 hybrid contribution -1.121 0.391 0.400 1.253 sum 19.742 -22.207 5.623 30.241 Atomic orbital electron populations 1.70014 1.07290 1.29026 1.49159 1.25571 0.95292 1.02272 0.92921 0.85861 0.80657 0.79589 0.80221 1.18687 1.18293 1.16108 1.22460 0.90310 0.96648 1.58213 0.92057 1.84682 1.06334 1.06098 1.97564 1.23277 0.96302 0.99640 1.07111 1.19885 0.89151 0.83552 0.75207 1.90680 1.59194 1.43788 1.50368 1.45890 1.08596 1.06397 1.74787 1.21003 0.79831 0.97537 0.96826 0.91635 1.21861 1.01140 0.98734 0.94727 1.21496 1.00112 0.94993 0.98900 1.21531 1.01850 0.95880 0.95828 1.21450 0.99068 0.99055 0.94254 1.21317 1.02012 0.92638 0.93415 0.88247 1.21908 1.00518 0.89834 0.94070 1.60452 1.19723 1.33335 1.17375 1.21948 0.99854 0.96255 0.87953 1.22496 0.99968 0.94214 0.95305 1.22843 0.99030 0.97856 0.96746 1.22848 1.01798 0.96498 0.96978 1.22951 1.01527 0.97295 0.96044 0.91357 0.87209 0.87189 0.75172 0.94250 0.89471 0.93077 0.91781 0.90948 0.91345 0.89700 0.92844 0.96395 0.91824 0.83550 0.95873 0.91986 0.88628 0.90961 0.91444 0.89603 0.91555 0.91147 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.97 21.65 0.30 -55.93 16 2 C 0.04 2.65 5.50 84.86 0.47 3.12 16 3 Si 0.91 45.41 27.74 68.60 1.90 47.31 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 7 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -8.85 18.55 -56.49 -1.05 -9.90 16 10 C -0.11 -4.30 6.16 71.24 0.44 -3.86 16 11 C 0.54 18.51 7.81 87.66 0.68 19.19 16 12 O -0.56 -23.98 15.53 -3.05 -0.05 -24.03 16 13 N -0.70 -16.76 3.62 -442.53 -1.60 -18.36 16 14 C 0.15 3.13 2.23 44.99 0.10 3.24 16 15 H 0.07 1.66 7.58 -2.38 -0.02 1.64 16 16 C -0.13 -2.49 5.60 30.59 0.17 -2.32 16 17 C -0.12 -1.96 5.77 30.60 0.18 -1.78 16 18 C -0.11 -1.39 5.92 30.60 0.18 -1.20 16 19 C -0.10 -1.26 4.92 30.59 0.15 -1.11 16 20 C -0.07 -1.03 2.12 -10.79 -0.02 -1.06 16 21 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 22 C 0.07 1.04 4.84 86.30 0.42 1.46 16 23 N -0.68 -8.76 5.96 -513.89 -3.06 -11.82 16 24 C 0.07 0.97 5.52 86.30 0.48 1.45 16 25 C -0.10 -1.17 3.90 -10.27 -0.04 -1.21 16 26 C -0.13 -1.54 7.63 31.12 0.24 -1.30 16 27 C -0.14 -1.54 8.08 31.12 0.25 -1.29 16 28 C -0.14 -1.60 7.64 31.12 0.24 -1.36 16 29 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 30 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 32 H 0.41 7.92 6.67 -92.71 -0.62 7.30 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 0.98 7.60 -2.39 -0.02 0.97 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 1.02 7.75 -2.39 -0.02 1.00 16 40 H 0.05 0.74 6.51 -2.39 -0.02 0.72 16 41 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.06 1.17 7.61 -2.38 -0.02 1.15 16 43 H 0.35 3.57 8.72 -89.69 -0.78 2.79 16 44 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.06 1.02 7.84 -2.38 -0.02 1.00 16 46 H 0.10 0.98 8.13 -2.39 -0.02 0.96 16 47 H 0.07 1.00 7.89 -2.39 -0.02 0.98 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 51 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 52 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 Total: -1.00 -70.59 414.74 0.51 -70.08 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.55 Total: 21.08 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.61 Total: -18.44 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -4.36 Total: -86.11 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -70.59 0.51 -70.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268765924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.984 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds