Wall clock time and date at job start Sat Apr 11 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46443 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.46816 * 124.49756 * 270.16594 * 11 10 9 13 13 C 1.54621 * 105.27259 * 163.77031 * 12 11 10 14 14 C 1.54679 * 101.14253 * 26.76186 * 13 12 11 15 15 C 1.49622 * 110.83081 * 94.23176 * 14 13 12 16 16 C 1.54934 * 111.70873 * 215.63833 * 15 14 13 17 17 C 1.54842 * 110.64096 * 290.89915 * 16 15 14 18 18 N 1.43237 * 116.74759 * 354.49197 * 17 16 15 19 19 C 1.34962 * 120.32906 * 255.07418 * 18 17 16 20 20 O 1.21287 * 120.00108 * 180.73249 * 19 18 17 21 21 C 1.50698 * 119.99950 * 0.72858 * 19 18 17 22 22 C 1.53007 * 109.47120 * 179.97438 * 21 19 18 23 23 F 1.39901 * 109.46926 * 179.97438 * 22 21 19 24 24 C 1.49917 * 119.19899 * 75.79294 * 18 17 16 25 25 C 1.45820 * 108.90485 * 275.34938 * 24 18 17 26 26 C 1.34893 * 124.30498 * 90.02429 * 11 10 9 27 27 O 1.21195 * 124.07031 * 357.78371 * 26 11 10 28 28 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 30 30 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 33 33 H 1.08980 * 110.29577 * 282.71978 * 12 11 10 34 34 H 1.08969 * 110.28745 * 44.81172 * 12 11 10 35 35 H 1.08851 * 111.17678 * 269.17623 * 13 12 11 36 36 H 1.08818 * 111.26570 * 144.40715 * 13 12 11 37 37 H 1.09419 * 108.79927 * 335.87787 * 15 14 13 38 38 H 1.09006 * 109.45207 * 94.08062 * 15 14 13 39 39 H 1.09391 * 109.10462 * 170.96031 * 16 15 14 40 40 H 1.08981 * 109.84691 * 52.07090 * 16 15 14 41 41 H 1.09191 * 108.02919 * 232.70036 * 17 16 15 42 42 H 1.09105 * 108.18082 * 116.58336 * 17 16 15 43 43 H 1.08999 * 109.47186 * 299.99741 * 21 19 18 44 44 H 1.09001 * 109.47534 * 60.00322 * 21 19 18 45 45 H 1.08996 * 109.47377 * 300.00370 * 22 21 19 46 46 H 1.09010 * 109.46518 * 60.00444 * 22 21 19 47 47 H 1.09612 * 109.10392 * 156.08429 * 24 18 17 48 48 H 1.08864 * 110.19333 * 36.94832 * 24 18 17 49 49 H 1.09324 * 108.71637 * 300.02441 * 25 24 18 50 50 H 1.09562 * 108.17956 * 183.93603 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5129 -4.9303 0.0012 12 6 1.0945 -5.6483 1.2115 13 6 0.0289 -6.6626 0.7355 14 6 0.4580 -6.8791 -0.7348 15 6 1.3525 -8.0721 -0.8578 16 6 2.4460 -7.8598 -1.9347 17 6 1.8200 -7.8341 -3.3507 18 7 0.4201 -8.1233 -3.4420 19 6 0.0001 -9.3189 -3.9064 20 8 -1.1868 -9.5526 -3.9937 21 6 1.0059 -10.3634 -4.3167 22 6 0.2721 -11.6154 -4.8015 23 9 1.2058 -12.5849 -5.1829 24 6 -0.5713 -7.0766 -3.0309 25 6 -0.7702 -7.1548 -1.5885 26 6 1.1327 -5.5893 -1.1128 27 8 1.3222 -5.1842 -2.2392 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5566 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 1.9426 -6.1709 1.6532 34 1 0.6609 -4.9547 1.9314 35 1 -0.9710 -6.2354 0.7860 36 1 0.0915 -7.5931 1.2962 37 1 1.8358 -8.2515 0.1073 38 1 0.7558 -8.9487 -1.1107 39 1 3.1676 -8.6801 -1.8787 40 1 2.9709 -6.9229 -1.7493 41 1 2.3541 -8.5579 -3.9695 42 1 1.9902 -6.8457 -3.7802 43 1 1.6283 -9.9722 -5.1214 44 1 1.6337 -10.6185 -3.4629 45 1 -0.3501 -12.0065 -3.9965 46 1 -0.3560 -11.3607 -5.6552 47 1 -1.5239 -7.2654 -3.5392 48 1 -0.2150 -6.0885 -3.3172 49 1 -1.1485 -8.1499 -1.3399 50 1 -1.5475 -6.4342 -1.3110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269125785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:00 Heat of formation + Delta-G solvation = -124.204272 kcal Electronic energy + Delta-G solvation = -31471.848866 eV Core-core repulsion = 27220.040401 eV Total energy + Delta-G solvation = -4251.808465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.92113 -41.43727 -39.82368 -37.04648 -36.20642 -34.68085 -33.31113 -32.88160 -32.04696 -30.81890 -28.69076 -27.23091 -25.83476 -25.08303 -24.44550 -22.58322 -22.05245 -21.78004 -20.39412 -18.91630 -18.34472 -17.53739 -16.84602 -16.74217 -16.66467 -16.01815 -15.61107 -15.55420 -15.39764 -15.03810 -14.70081 -14.53691 -14.41567 -14.12109 -13.84101 -13.53785 -13.33355 -13.10343 -12.88396 -12.72770 -12.64272 -12.31096 -12.26397 -12.01656 -11.89056 -11.66330 -11.52610 -11.33541 -11.14620 -11.12051 -11.01850 -10.96996 -10.73406 -10.60877 -10.42455 -10.02744 -9.91589 -9.90599 -9.34140 -9.07761 -8.74684 -8.41135 -8.04719 -6.06290 -4.09955 2.38341 2.76348 2.95432 3.28703 3.34668 3.36893 3.51620 4.12103 4.21583 4.27302 4.37575 4.41909 4.46173 4.55533 4.73193 4.78357 4.82226 4.97388 5.04378 5.09647 5.13339 5.22430 5.27318 5.30007 5.34797 5.55628 5.59032 5.62396 5.67736 5.70497 5.70607 5.81855 5.84662 5.87732 5.97691 6.01842 6.04031 6.07743 6.15258 6.41029 6.44546 6.76477 6.96387 7.33028 7.46997 7.62998 7.81080 7.93356 7.94216 8.29352 8.62159 8.96847 9.54389 11.05029 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002499 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.696600 B =11200.601367 C =11425.786055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.013 3.987 10 C 0.129 3.871 11 N -0.612 5.612 12 C 0.101 3.899 13 C -0.124 4.124 14 C -0.089 4.089 15 C -0.091 4.091 16 C -0.134 4.134 17 C 0.102 3.898 18 N -0.593 5.593 19 C 0.518 3.482 20 O -0.547 6.547 21 C -0.175 4.175 22 C 0.077 3.923 23 F -0.218 7.218 24 C 0.112 3.888 25 C -0.115 4.115 26 C 0.530 3.470 27 O -0.525 6.525 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.070 0.930 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -22.376 -2.166 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.009 3.991 11 N -0.345 5.345 12 C -0.022 4.022 13 C -0.162 4.162 14 C -0.093 4.093 15 C -0.129 4.129 16 C -0.173 4.173 17 C -0.022 4.022 18 N -0.325 5.325 19 C 0.306 3.694 20 O -0.425 6.425 21 C -0.216 4.216 22 C 0.022 3.978 23 F -0.200 7.200 24 C -0.008 4.008 25 C -0.153 4.153 26 C 0.317 3.683 27 O -0.402 6.402 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.124 0.876 49 H 0.088 0.912 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.516 -22.087 -2.798 22.316 hybrid contribution 0.584 1.109 0.291 1.287 sum 2.100 -20.978 -2.507 21.232 Atomic orbital electron populations 1.69973 1.06103 1.26722 1.50324 1.25002 0.94852 0.99319 0.95094 0.86560 0.79764 0.83270 0.78204 1.20569 1.21191 1.19823 1.21078 0.92999 0.90709 1.51353 0.92536 1.19390 0.94410 0.91044 0.97673 1.21760 0.95010 0.81073 1.01244 1.48716 1.56192 1.23353 1.06229 1.22020 0.96956 0.94521 0.88753 1.22859 0.99688 0.99764 0.93900 1.20381 0.97211 0.94966 0.96694 1.21225 0.96553 0.96058 0.99056 1.22708 0.97513 1.02735 0.94349 1.21202 0.80765 1.03330 0.96950 1.47938 1.07307 1.14129 1.63087 1.20346 0.89329 0.82455 0.77275 1.90705 1.17481 1.79017 1.55301 1.22249 0.99499 0.95389 1.04414 1.21673 0.88970 0.85171 1.02035 1.92770 1.68758 1.65255 1.93177 1.21022 0.93003 0.92363 0.94434 1.20506 0.96463 1.02966 0.95406 1.20153 0.78468 0.84891 0.84769 1.90592 1.56636 1.71047 1.21900 0.92914 0.96085 0.96584 0.91788 0.91175 0.91681 0.90162 0.89716 0.89455 0.91714 0.91108 0.91530 0.90619 0.91273 0.89714 0.87701 0.87748 0.89893 0.89875 0.89650 0.87639 0.91154 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.01 0.32 5.30 -27.89 -0.15 0.18 16 10 C 0.13 2.58 5.85 -4.07 -0.02 2.56 16 11 N -0.61 -10.17 2.95 -172.61 -0.51 -10.68 16 12 C 0.10 1.26 7.36 -3.02 -0.02 1.24 16 13 C -0.12 -1.28 6.01 -25.00 -0.15 -1.43 16 14 C -0.09 -1.05 0.47 -157.06 -0.07 -1.13 16 15 C -0.09 -0.89 4.71 -27.38 -0.13 -1.02 16 16 C -0.13 -1.33 5.58 -24.74 -0.14 -1.47 16 17 C 0.10 1.05 5.05 -4.79 -0.02 1.02 16 18 N -0.59 -6.65 1.97 -175.76 -0.35 -6.99 16 19 C 0.52 5.71 7.70 -10.90 -0.08 5.63 16 20 O -0.55 -7.69 15.55 5.55 0.09 -7.60 16 21 C -0.18 -1.37 4.53 -27.88 -0.13 -1.49 16 22 C 0.08 0.63 6.84 37.16 0.25 0.89 16 23 F -0.22 -2.11 17.36 2.25 0.04 -2.07 16 24 C 0.11 1.43 5.33 -5.53 -0.03 1.40 16 25 C -0.11 -1.36 3.99 -30.59 -0.12 -1.48 16 26 C 0.53 8.56 5.15 -11.08 -0.06 8.50 16 27 O -0.52 -9.97 12.50 5.63 0.07 -9.90 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.47 7.92 -51.93 -0.41 1.06 16 33 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 34 H 0.08 1.04 8.14 -51.95 -0.42 0.61 16 35 H 0.08 0.90 7.63 -52.01 -0.40 0.50 16 36 H 0.09 0.67 7.73 -52.03 -0.40 0.27 16 37 H 0.06 0.56 7.63 -51.69 -0.39 0.16 16 38 H 0.07 0.67 6.86 -51.93 -0.36 0.31 16 39 H 0.07 0.51 8.17 -51.71 -0.42 0.09 16 40 H 0.08 0.93 6.59 -51.94 -0.34 0.59 16 41 H 0.07 0.53 5.86 -51.82 -0.30 0.23 16 42 H 0.08 1.07 6.98 -51.87 -0.36 0.70 16 43 H 0.10 0.69 7.43 -51.93 -0.39 0.31 16 44 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 46 H 0.08 0.68 8.10 -51.92 -0.42 0.26 16 47 H 0.09 1.11 7.36 -51.58 -0.38 0.73 16 48 H 0.11 1.59 5.89 -52.01 -0.31 1.28 16 49 H 0.07 0.78 7.62 -51.75 -0.39 0.39 16 50 H 0.07 0.90 7.75 -51.61 -0.40 0.50 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -33.01 385.37 -8.59 -41.61 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.17 Total: -0.80 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.29 Total: 0.16 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.12 Total: -43.59 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.16 Total: -17.50 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.01 -8.59 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269125785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.599 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds