Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00395 * 2 1 4 4 O 1.21279 * 120.00317 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99723 * 359.97438 * 3 2 1 6 6 S 1.81001 * 109.46762 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99500 * 179.97438 * 6 5 3 8 8 H 1.07993 * 120.00409 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31634 * 119.99855 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00026 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47023 * 90.00033 * 11 9 7 13 13 H 1.48500 * 109.46671 * 209.99790 * 11 9 7 14 14 H 1.48499 * 109.47079 * 329.99718 * 11 9 7 15 15 C 1.46505 * 119.99728 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.62707 * 176.89892 * 15 2 1 17 17 C 1.55139 * 110.85687 * 53.68434 * 15 2 1 18 18 C 1.54902 * 101.65282 * 205.89253 * 17 15 2 19 19 N 1.47844 * 104.79512 * 37.07292 * 18 17 15 20 20 C 1.46907 * 111.00018 * 213.63179 * 19 18 17 21 21 C 1.53003 * 109.47018 * 290.84686 * 20 19 18 22 22 C 1.53779 * 113.61005 * 184.99972 * 21 20 19 23 23 C 1.53787 * 87.07963 * 219.93029 * 22 21 20 24 24 C 1.52997 * 113.61251 * 139.97890 * 23 22 21 25 25 C 1.52992 * 113.61596 * 270.88278 * 23 22 21 26 26 C 1.53779 * 113.69268 * 87.46210 * 21 20 19 27 27 C 1.47438 * 108.56903 * 335.90197 * 19 18 17 28 28 H 1.08996 * 109.47330 * 270.00435 * 1 2 3 29 29 H 1.09003 * 109.46704 * 30.00149 * 1 2 3 30 30 H 1.09000 * 109.47259 * 150.00280 * 1 2 3 31 31 H 1.08999 * 109.46868 * 299.99886 * 5 3 2 32 32 H 1.09000 * 109.46634 * 60.00392 * 5 3 2 33 33 H 0.97003 * 119.99765 * 180.02562 * 10 9 7 34 34 H 1.09000 * 110.98924 * 323.98617 * 17 15 2 35 35 H 1.08999 * 110.98873 * 87.76304 * 17 15 2 36 36 H 1.08997 * 110.37611 * 278.24087 * 18 17 15 37 37 H 1.09002 * 110.37007 * 155.89952 * 18 17 15 38 38 H 1.08996 * 109.47277 * 170.84397 * 20 19 18 39 39 H 1.08996 * 109.46488 * 50.84171 * 20 19 18 40 40 H 1.09006 * 112.85187 * 316.19170 * 21 20 19 41 41 H 1.08997 * 113.61646 * 105.38661 * 22 21 20 42 42 H 1.09000 * 113.61527 * 334.47932 * 22 21 20 43 43 H 1.09003 * 109.47316 * 60.00564 * 24 23 22 44 44 H 1.09000 * 109.47118 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47534 * 300.00234 * 24 23 22 46 46 H 1.09008 * 109.47336 * 60.00442 * 25 23 22 47 47 H 1.09003 * 109.47337 * 179.97438 * 25 23 22 48 48 H 1.08993 * 109.47460 * 299.99983 * 25 23 22 49 49 H 1.09002 * 113.61557 * 25.44212 * 26 21 20 50 50 H 1.09004 * 113.61501 * 254.53633 * 26 21 20 51 51 H 1.09000 * 109.88776 * 120.39722 * 27 19 18 52 52 H 1.08999 * 109.88924 * 241.58725 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5618 3.8480 -0.0012 7 6 1.4417 5.2081 -0.0026 8 1 0.3765 5.0305 -0.0032 9 6 1.9285 6.5080 -0.0039 10 7 3.2269 6.7245 -0.0036 11 14 0.7410 7.9501 -0.0047 12 1 0.4270 8.3334 1.3952 13 1 1.3622 9.1023 -0.7059 14 1 -0.5099 7.5609 -0.7039 15 6 2.1975 -1.2688 0.0006 16 1 3.2717 -1.0921 -0.0547 17 6 1.7301 -2.1769 -1.1672 18 6 2.0604 -3.5873 -0.6182 19 7 1.7564 -3.5108 0.8266 20 6 2.6754 -4.3535 1.6033 21 6 2.3818 -5.8274 1.3162 22 6 3.2099 -6.7988 2.1737 23 6 3.3493 -7.6687 0.9132 24 6 4.7407 -8.2813 0.7422 25 6 2.2237 -8.6915 0.7468 26 6 3.1381 -6.3822 0.0976 27 6 1.8452 -2.1016 1.2511 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7592 2.5298 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 3.5671 7.6329 -0.0042 34 1 0.6600 -2.0671 -1.3430 35 1 2.2963 -1.9681 -2.0749 36 1 3.1145 -3.8173 -0.7726 37 1 1.4329 -4.3380 -1.0988 38 1 2.5387 -4.1562 2.6665 39 1 3.7033 -4.1261 1.3208 40 1 1.3153 -6.0527 1.3078 41 1 2.6381 -7.2738 2.9709 42 1 4.1539 -6.3788 2.5209 43 1 4.9673 -8.9139 1.6005 44 1 4.7641 -8.8817 -0.1673 45 1 5.4821 -7.4854 0.6717 46 1 1.2677 -8.1721 0.6794 47 1 2.3883 -9.2682 -0.1634 48 1 2.2127 -9.3627 1.6055 49 1 4.0625 -5.8482 -0.1228 50 1 2.5084 -6.5208 -0.7813 51 1 0.8873 -1.7753 1.6562 52 1 2.6260 -1.9894 2.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269214412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -16.016952 kcal Electronic energy + Delta-G solvation = -27357.811669 eV Core-core repulsion = 23676.907734 eV Total energy + Delta-G solvation = -3680.903935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56788 -39.78409 -38.17732 -35.17558 -32.59607 -32.43018 -30.47187 -29.64195 -28.09026 -27.82210 -26.79182 -26.16243 -25.59869 -25.33087 -21.70685 -21.27897 -20.58908 -19.08914 -18.56959 -17.72418 -16.98764 -16.56189 -15.79806 -15.42646 -15.33037 -15.03978 -14.80641 -14.64896 -14.41995 -14.16391 -13.90778 -13.52525 -13.42054 -13.12567 -13.08589 -12.89214 -12.72351 -12.45722 -12.30696 -12.24702 -12.23510 -12.09395 -11.97148 -11.73398 -11.60187 -11.49611 -11.06627 -11.02692 -10.94649 -10.85298 -10.78400 -10.74819 -10.34469 -10.20107 -9.80940 -9.37547 -9.06797 -8.71205 -8.37614 -8.23018 -6.50554 -6.21871 -3.92543 2.89081 3.01811 3.22165 3.25251 3.29974 3.56315 3.73396 4.11976 4.20090 4.27935 4.32977 4.39999 4.50458 4.60121 4.77518 4.85225 4.99776 5.02428 5.11099 5.12979 5.13460 5.18999 5.22063 5.23996 5.27108 5.38159 5.41052 5.43585 5.45373 5.46062 5.52330 5.54248 5.58284 5.58593 5.63194 5.66013 5.76253 5.78594 5.83243 5.85203 5.87159 5.93166 6.03747 6.09795 6.13302 6.22270 6.62130 6.75118 6.84804 7.52870 7.59497 8.34973 8.53744 9.23411 10.85547 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036962 B = 0.001745 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.348417 B =16046.506808 C =16302.409410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.534 3.466 4 O -0.518 6.518 5 C -0.149 4.149 6 S -0.063 6.063 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.124 3.876 16 H 0.106 0.894 17 C -0.143 4.143 18 C 0.048 3.952 19 N -0.524 5.524 20 C 0.059 3.941 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.091 4.091 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.128 4.128 27 C 0.032 3.968 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.083 0.917 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -30.222 1.133 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.349 5.349 3 C 0.323 3.677 4 O -0.392 6.392 5 C -0.300 4.300 6 S 0.164 5.836 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.018 3.982 16 H 0.124 0.876 17 C -0.182 4.182 18 C -0.080 4.080 19 N -0.248 5.248 20 C -0.069 4.069 21 C -0.119 4.119 22 C -0.165 4.165 23 C -0.091 4.091 24 C -0.193 4.193 25 C -0.185 4.185 26 C -0.165 4.165 27 C -0.097 4.097 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.102 0.898 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.015 -30.256 1.232 30.431 hybrid contribution -1.406 1.245 -0.076 1.880 sum -4.422 -29.011 1.156 29.368 Atomic orbital electron populations 1.21774 0.79652 1.03236 1.01894 1.47748 1.06780 1.05005 1.75393 1.20389 0.87932 0.84590 0.74838 1.90683 1.13816 1.86760 1.47972 1.23556 1.04524 0.97099 1.04778 1.85396 1.08107 0.93372 1.96709 1.22860 0.94312 0.92200 1.58953 0.90924 1.24995 0.95674 0.98374 0.94530 1.70023 1.11743 1.21651 1.46863 0.86167 0.80265 0.80711 0.78354 1.20264 1.20749 1.19688 1.22194 0.98404 0.83245 0.94318 0.87640 1.23118 1.02643 0.94144 0.98287 1.23012 0.99729 0.97015 0.88275 1.63619 1.50643 1.07149 1.03423 1.22333 0.93809 0.92587 0.98217 1.22483 0.99988 0.92939 0.96530 1.23080 1.00252 0.96932 0.96279 1.21770 0.95714 0.94383 0.97240 1.21732 0.95477 1.00650 1.01448 1.21582 0.97308 0.97998 1.01565 1.23208 1.00286 0.96004 0.97043 1.23172 1.02197 0.87243 0.97106 0.92654 0.90589 0.90953 0.89196 0.89201 0.92193 0.89981 0.90369 0.93253 0.90103 0.90780 0.94454 0.88474 0.91494 0.90183 0.92705 0.92745 0.92603 0.92296 0.92536 0.92517 0.90361 0.91544 0.89837 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.19 59.85 0.55 1.38 16 2 N -0.61 -8.74 2.88 -171.84 -0.50 -9.24 16 3 C 0.53 10.24 7.69 -10.98 -0.08 10.15 16 4 O -0.52 -11.91 15.23 5.56 0.08 -11.83 16 5 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 6 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 11 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.12 1.56 3.34 -66.10 -0.22 1.34 16 16 H 0.11 1.59 7.00 -51.93 -0.36 1.22 16 17 C -0.14 -1.43 6.60 -24.60 -0.16 -1.59 16 18 C 0.05 0.42 5.40 -2.30 -0.01 0.40 16 19 N -0.52 -4.96 5.16 -231.25 -1.19 -6.15 16 20 C 0.06 0.49 4.48 -3.82 -0.02 0.48 16 21 C -0.10 -0.71 3.30 -89.81 -0.30 -1.01 16 22 C -0.13 -0.82 6.79 -25.92 -0.18 -1.00 16 23 C -0.09 -0.56 1.39 -153.70 -0.21 -0.78 16 24 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 25 C -0.13 -0.71 9.07 37.15 0.34 -0.38 16 26 C -0.13 -0.86 5.30 -25.92 -0.14 -0.99 16 27 C 0.03 0.35 6.51 -2.84 -0.02 0.33 16 28 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 29 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.07 0.63 6.01 -51.93 -0.31 0.32 16 31 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 32 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 0.77 6.04 -51.93 -0.31 0.46 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.43 7.01 -51.93 -0.36 0.07 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.63 8.03 -51.93 -0.42 0.22 16 39 H 0.04 0.33 7.56 -51.93 -0.39 -0.06 16 40 H 0.10 0.75 7.65 -51.93 -0.40 0.35 16 41 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 42 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 0.34 7.94 -51.93 -0.41 -0.08 16 46 H 0.06 0.34 7.34 -51.92 -0.38 -0.04 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 0.56 7.57 -51.93 -0.39 0.17 16 50 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 51 H 0.08 0.92 7.01 -51.93 -0.36 0.56 16 52 H 0.06 0.68 7.55 -51.93 -0.39 0.29 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -33.02 411.69 -11.04 -44.06 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -9.39 Total: -2.07 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 0.26 Total: -7.96 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.96 Total: -40.87 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.02 -11.04 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269214412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.040 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds