Wall clock time and date at job start Sat Apr 11 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00395 * 2 1 4 4 O 1.21279 * 120.00317 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99723 * 359.97438 * 3 2 1 6 6 S 1.81001 * 109.46762 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99500 * 179.97438 * 6 5 3 8 8 H 1.07993 * 120.00409 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31634 * 119.99855 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00026 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47023 * 90.00033 * 11 9 7 13 13 H 1.48500 * 109.46671 * 209.99790 * 11 9 7 14 14 H 1.48499 * 109.47079 * 329.99718 * 11 9 7 15 15 C 1.46505 * 119.99728 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.62707 * 176.89892 * 15 2 1 17 17 C 1.55139 * 110.85687 * 53.68434 * 15 2 1 18 18 C 1.54902 * 101.65282 * 205.89253 * 17 15 2 19 19 N 1.47844 * 104.79512 * 37.07292 * 18 17 15 20 20 C 1.46907 * 111.00018 * 213.63179 * 19 18 17 21 21 C 1.53003 * 109.47018 * 290.84686 * 20 19 18 22 22 C 1.53779 * 113.61005 * 184.99972 * 21 20 19 23 23 C 1.53787 * 87.07963 * 219.93029 * 22 21 20 24 24 C 1.52997 * 113.61251 * 139.97890 * 23 22 21 25 25 C 1.52992 * 113.61596 * 270.88278 * 23 22 21 26 26 C 1.53779 * 113.69268 * 87.46210 * 21 20 19 27 27 C 1.47438 * 108.56903 * 335.90197 * 19 18 17 28 28 H 1.08996 * 109.47330 * 270.00435 * 1 2 3 29 29 H 1.09003 * 109.46704 * 30.00149 * 1 2 3 30 30 H 1.09000 * 109.47259 * 150.00280 * 1 2 3 31 31 H 1.08999 * 109.46868 * 299.99886 * 5 3 2 32 32 H 1.09000 * 109.46634 * 60.00392 * 5 3 2 33 33 H 0.97003 * 119.99765 * 180.02562 * 10 9 7 34 34 H 1.09000 * 110.98924 * 323.98617 * 17 15 2 35 35 H 1.08999 * 110.98873 * 87.76304 * 17 15 2 36 36 H 1.08997 * 110.37611 * 278.24087 * 18 17 15 37 37 H 1.09002 * 110.37007 * 155.89952 * 18 17 15 38 38 H 1.08996 * 109.47277 * 170.84397 * 20 19 18 39 39 H 1.08996 * 109.46488 * 50.84171 * 20 19 18 40 40 H 1.09006 * 112.85187 * 316.19170 * 21 20 19 41 41 H 1.08997 * 113.61646 * 105.38661 * 22 21 20 42 42 H 1.09000 * 113.61527 * 334.47932 * 22 21 20 43 43 H 1.09003 * 109.47316 * 60.00564 * 24 23 22 44 44 H 1.09000 * 109.47118 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47534 * 300.00234 * 24 23 22 46 46 H 1.09008 * 109.47336 * 60.00442 * 25 23 22 47 47 H 1.09003 * 109.47337 * 179.97438 * 25 23 22 48 48 H 1.08993 * 109.47460 * 299.99983 * 25 23 22 49 49 H 1.09002 * 113.61557 * 25.44212 * 26 21 20 50 50 H 1.09004 * 113.61501 * 254.53633 * 26 21 20 51 51 H 1.09000 * 109.88776 * 120.39722 * 27 19 18 52 52 H 1.08999 * 109.88924 * 241.58725 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5618 3.8480 -0.0012 7 6 1.4417 5.2081 -0.0026 8 1 0.3765 5.0305 -0.0032 9 6 1.9285 6.5080 -0.0039 10 7 3.2269 6.7245 -0.0036 11 14 0.7410 7.9501 -0.0047 12 1 0.4270 8.3334 1.3952 13 1 1.3622 9.1023 -0.7059 14 1 -0.5099 7.5609 -0.7039 15 6 2.1975 -1.2688 0.0006 16 1 3.2717 -1.0921 -0.0547 17 6 1.7301 -2.1769 -1.1672 18 6 2.0604 -3.5873 -0.6182 19 7 1.7564 -3.5108 0.8266 20 6 2.6754 -4.3535 1.6033 21 6 2.3818 -5.8274 1.3162 22 6 3.2099 -6.7988 2.1737 23 6 3.3493 -7.6687 0.9132 24 6 4.7407 -8.2813 0.7422 25 6 2.2237 -8.6915 0.7468 26 6 3.1381 -6.3822 0.0976 27 6 1.8452 -2.1016 1.2511 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7592 2.5298 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 3.5671 7.6329 -0.0042 34 1 0.6600 -2.0671 -1.3430 35 1 2.2963 -1.9681 -2.0749 36 1 3.1145 -3.8173 -0.7726 37 1 1.4329 -4.3380 -1.0988 38 1 2.5387 -4.1562 2.6665 39 1 3.7033 -4.1261 1.3208 40 1 1.3153 -6.0527 1.3078 41 1 2.6381 -7.2738 2.9709 42 1 4.1539 -6.3788 2.5209 43 1 4.9673 -8.9139 1.6005 44 1 4.7641 -8.8817 -0.1673 45 1 5.4821 -7.4854 0.6717 46 1 1.2677 -8.1721 0.6794 47 1 2.3883 -9.2682 -0.1634 48 1 2.2127 -9.3627 1.6055 49 1 4.0625 -5.8482 -0.1228 50 1 2.5084 -6.5208 -0.7813 51 1 0.8873 -1.7753 1.6562 52 1 2.6260 -1.9894 2.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269214412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:05 Heat of formation + Delta-G solvation = -35.851526 kcal Electronic energy + Delta-G solvation = -27358.671760 eV Core-core repulsion = 23676.907734 eV Total energy + Delta-G solvation = -3681.764026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43533 -40.73524 -39.23091 -36.36972 -34.59013 -33.41214 -31.38158 -30.71455 -29.19918 -28.26951 -27.80039 -27.64220 -26.74378 -26.18537 -22.46741 -22.38706 -21.25256 -20.40348 -19.59683 -19.08001 -18.37398 -17.50470 -16.89284 -16.83695 -16.70949 -16.26031 -15.95105 -15.60312 -15.31690 -15.03351 -14.75614 -14.59301 -14.50369 -14.42149 -14.08651 -13.85474 -13.60860 -13.54723 -13.36762 -13.19629 -13.12299 -12.91194 -12.89742 -12.79998 -12.67703 -12.60688 -12.49464 -12.37830 -12.19607 -11.75467 -11.70509 -11.48676 -11.36175 -11.14688 -10.94111 -10.86394 -10.74619 -10.27955 -9.78141 -9.29315 -8.68589 -8.35149 -6.13856 1.24170 1.42469 1.44973 1.52023 1.56039 2.04475 2.26896 2.93635 2.99071 3.25032 3.54740 3.58190 3.62755 3.75443 3.79478 3.81300 3.91435 3.99989 4.16118 4.22953 4.26961 4.33585 4.37123 4.46430 4.47910 4.54802 4.59029 4.65657 4.70336 4.78958 4.80395 4.81774 4.89666 4.89817 4.92641 4.99116 5.02131 5.02546 5.05957 5.08520 5.15016 5.21080 5.30062 5.35085 5.41269 5.54573 5.58277 5.69154 5.90888 6.08836 6.19145 6.24592 7.05987 7.09787 8.74118 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036962 B = 0.001745 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.348417 B =16046.506808 C =16302.409410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.532 3.468 4 O -0.569 6.569 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.257 1.257 15 C 0.117 3.883 16 H 0.074 0.926 17 C -0.134 4.134 18 C 0.053 3.947 19 N -0.520 5.520 20 C 0.059 3.941 21 C -0.094 4.094 22 C -0.126 4.126 23 C -0.090 4.090 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.126 4.126 27 C 0.040 3.960 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 -31.678 0.951 32.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.320 3.680 4 O -0.447 6.447 5 C -0.273 4.273 6 S 0.073 5.927 7 C -0.693 4.693 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.181 1.181 15 C 0.012 3.988 16 H 0.092 0.908 17 C -0.173 4.173 18 C -0.075 4.075 19 N -0.244 5.244 20 C -0.069 4.069 21 C -0.113 4.113 22 C -0.164 4.164 23 C -0.090 4.090 24 C -0.193 4.193 25 C -0.183 4.183 26 C -0.164 4.164 27 C -0.089 4.089 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.108 0.892 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.993 -31.769 1.050 32.346 hybrid contribution -0.506 1.542 -0.008 1.623 sum -6.498 -30.227 1.042 30.935 Atomic orbital electron populations 1.22098 0.76920 1.04819 1.03462 1.47722 1.08367 1.04009 1.73107 1.20207 0.87269 0.85537 0.75037 1.90668 1.15813 1.87456 1.50787 1.23370 1.02666 0.94747 1.06491 1.85598 1.12736 0.97360 1.97041 1.23198 0.94641 0.92586 1.58920 0.89818 1.26144 0.97606 1.01705 0.93691 1.70192 1.14149 1.22469 1.47996 0.84941 0.77891 0.76262 0.78806 1.19304 1.20319 1.18078 1.22299 0.96743 0.82933 0.96789 0.90796 1.23090 1.03350 0.93865 0.96955 1.23031 1.00066 0.96610 0.87789 1.63713 1.50801 1.06043 1.03890 1.22360 0.93188 0.93362 0.97999 1.22408 1.00004 0.91863 0.97033 1.23072 1.00022 0.96805 0.96525 1.21785 0.96135 0.94345 0.96708 1.21728 0.95208 1.00586 1.01776 1.21575 0.96924 0.97863 1.01940 1.23176 0.99945 0.96223 0.97019 1.23064 1.01988 0.87954 0.95891 0.91054 0.90264 0.88196 0.87235 0.87386 0.92005 0.88455 0.90662 0.93448 0.88356 0.90960 0.95271 0.88511 0.91097 0.90510 0.92381 0.92413 0.93064 0.92298 0.92184 0.92135 0.91017 0.91248 0.89218 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 9.19 127.77 1.17 2.43 16 2 N -0.60 -16.36 2.88 -815.97 -2.35 -18.72 16 3 C 0.53 20.49 7.69 87.66 0.67 21.17 16 4 O -0.57 -27.30 15.23 -3.03 -0.05 -27.35 16 5 C -0.12 -4.92 4.71 71.24 0.34 -4.59 16 6 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 7 C -0.55 -31.28 9.50 67.96 0.65 -30.63 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 C 0.01 0.76 5.49 84.86 0.47 1.22 16 10 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 11 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 15 C 0.12 2.89 3.34 46.17 0.15 3.04 16 16 H 0.07 2.32 7.00 -2.39 -0.02 2.31 16 17 C -0.13 -2.43 6.60 31.98 0.21 -2.21 16 18 C 0.05 0.82 5.40 86.77 0.47 1.29 16 19 N -0.52 -8.97 5.16 -885.55 -4.57 -13.54 16 20 C 0.06 0.94 4.48 86.30 0.39 1.32 16 21 C -0.09 -1.20 3.30 -10.27 -0.03 -1.23 16 22 C -0.13 -1.47 6.79 31.12 0.21 -1.26 16 23 C -0.09 -0.98 1.39 -51.66 -0.07 -1.05 16 24 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 25 C -0.13 -1.18 9.07 71.98 0.65 -0.53 16 26 C -0.13 -1.51 5.30 31.12 0.16 -1.35 16 27 C 0.04 0.84 6.51 86.65 0.56 1.40 16 28 H 0.07 1.15 7.90 -2.39 -0.02 1.14 16 29 H 0.08 1.45 6.44 -2.39 -0.02 1.44 16 30 H 0.10 1.34 6.01 -2.39 -0.01 1.32 16 31 H 0.11 3.98 7.40 -2.40 -0.02 3.96 16 32 H 0.11 3.96 8.11 -2.39 -0.02 3.94 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 34 H 0.10 1.49 6.04 -2.39 -0.01 1.47 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 0.78 7.01 -2.39 -0.02 0.76 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.18 8.03 -2.39 -0.02 1.16 16 39 H 0.03 0.52 7.56 -2.39 -0.02 0.50 16 40 H 0.10 1.29 7.65 -2.38 -0.02 1.27 16 41 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 42 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.05 0.58 7.94 -2.39 -0.02 0.57 16 46 H 0.06 0.56 7.34 -2.38 -0.02 0.54 16 47 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.07 0.97 7.57 -2.39 -0.02 0.95 16 50 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 51 H 0.09 1.78 7.01 -2.39 -0.02 1.76 16 52 H 0.05 1.10 7.55 -2.39 -0.02 1.09 16 Total: -1.00 -74.16 411.69 1.72 -72.44 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.87 Total: 19.17 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 6.67 Total: -11.76 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -6.64 Total: -88.26 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -74.16 1.72 -72.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269214412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.585 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds