Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47382 * 269.99977 * 3 2 1 5 5 H 1.48494 * 109.47365 * 30.00191 * 3 2 1 6 6 H 1.48507 * 109.46750 * 150.00278 * 3 2 1 7 7 C 1.38798 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00200 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99853 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46955 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00149 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00219 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00608 * 180.27442 * 13 11 10 15 15 C 1.52993 * 109.47418 * 174.67864 * 14 13 11 16 16 N 1.46904 * 115.55338 * 275.66351 * 15 14 13 17 17 C 1.46900 * 110.99839 * 294.70327 * 16 15 14 18 18 C 1.52995 * 109.46820 * 181.75715 * 17 16 15 19 19 C 1.53007 * 109.47071 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46969 * 295.00186 * 19 18 17 21 21 C 1.52997 * 109.46976 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47451 * 59.99696 * 21 20 19 23 23 C 1.52996 * 109.47124 * 300.00181 * 22 21 20 24 24 C 1.52996 * 109.47464 * 59.99717 * 23 22 21 25 25 C 1.53008 * 117.49852 * 129.99199 * 15 14 13 26 26 C 1.53004 * 117.49849 * 61.33615 * 15 14 13 27 27 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46637 * 60.00284 * 10 9 7 29 29 H 1.08998 * 109.47252 * 299.99722 * 10 9 7 30 30 H 0.97009 * 119.99926 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.47200 * 294.68290 * 14 13 11 32 32 H 1.09000 * 109.46989 * 54.67919 * 14 13 11 33 33 H 1.00896 * 110.99968 * 170.74630 * 16 15 14 34 34 H 1.09003 * 109.46890 * 301.75647 * 17 16 15 35 35 H 1.09002 * 109.47214 * 61.75354 * 17 16 15 36 36 H 1.08993 * 109.47153 * 299.99775 * 18 17 16 37 37 H 1.09001 * 109.47313 * 60.00580 * 18 17 16 38 38 H 1.08996 * 109.47126 * 54.99930 * 19 18 17 39 39 H 1.09004 * 109.47005 * 299.99539 * 20 19 18 40 40 H 1.09001 * 109.47303 * 59.99831 * 20 19 18 41 41 H 1.09004 * 109.46827 * 299.99587 * 21 20 19 42 42 H 1.09002 * 109.47215 * 180.02562 * 21 20 19 43 43 H 1.09003 * 109.47130 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.47194 * 60.00116 * 22 21 20 45 45 H 1.08998 * 109.47471 * 299.99501 * 23 22 21 46 46 H 1.09001 * 109.47148 * 179.97438 * 23 22 21 47 47 H 1.08993 * 109.47755 * 179.97438 * 24 23 22 48 48 H 1.09011 * 109.47172 * 59.99629 * 24 23 22 49 49 H 1.08997 * 117.49929 * 0.02562 * 25 15 14 50 50 H 1.09004 * 117.49714 * 145.02314 * 25 15 14 51 51 H 1.09002 * 117.49729 * 214.97524 * 26 15 14 52 52 H 1.09000 * 117.50107 * 359.97381 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7909 -5.5023 -0.0009 13 7 2.8439 -6.3431 -0.0022 14 6 2.3302 -7.7151 -0.0079 15 6 3.4967 -8.6960 -0.1410 16 7 3.9533 -8.9552 -1.5131 17 6 2.9119 -9.6352 -2.2948 18 6 3.4387 -9.9267 -3.7012 19 6 2.3543 -10.6356 -4.5153 20 6 2.0675 -12.0061 -3.8983 21 6 0.9836 -12.7152 -4.7126 22 6 1.4643 -12.8952 -6.1539 23 6 1.7511 -11.5249 -6.7708 24 6 2.8350 -10.8157 -5.9566 25 6 3.5630 -9.8545 0.8562 26 6 4.5529 -8.6921 0.9660 27 1 -0.4850 0.8400 0.0004 28 1 3.1250 -3.7318 0.8875 29 1 3.1237 -3.7311 -0.8925 30 1 3.8008 -6.1836 -0.0025 31 1 1.7980 -7.9077 0.9237 32 1 1.6489 -7.8445 -0.8489 33 1 4.8112 -9.4862 -1.5144 34 1 2.6440 -10.5718 -1.8057 35 1 2.0319 -8.9955 -2.3617 36 1 3.7067 -8.9902 -4.1902 37 1 4.3187 -10.5665 -3.6343 38 1 1.4441 -10.0361 -4.5077 39 1 2.9778 -12.6057 -3.9059 40 1 1.7254 -11.8778 -2.8713 41 1 0.0732 -12.1157 -4.7054 42 1 0.7789 -13.6913 -4.2729 43 1 0.6922 -13.4009 -6.7339 44 1 2.3747 -13.4947 -6.1611 45 1 0.8408 -10.9254 -6.7638 46 1 2.0940 -11.6532 -7.7975 47 1 3.0397 -9.8396 -6.3963 48 1 3.7455 -11.4152 -5.9636 49 1 2.7752 -9.9181 1.6069 50 1 3.9457 -10.8089 0.4943 51 1 5.5863 -8.8823 0.6763 52 1 4.4168 -7.9905 1.7890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269379320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -70.354394 kcal Electronic energy + Delta-G solvation = -26792.080988 eV Core-core repulsion = 23108.820805 eV Total energy + Delta-G solvation = -3683.260183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.86298 -39.92067 -39.24984 -35.71032 -34.98049 -34.57628 -32.49489 -31.61659 -31.25458 -28.19839 -27.83489 -27.26407 -24.31928 -23.46304 -23.11674 -21.67530 -21.51993 -20.89110 -20.53166 -19.74534 -17.86112 -17.42387 -17.14159 -16.87524 -16.51009 -16.38042 -16.15451 -15.82164 -15.61239 -15.15688 -14.89624 -14.74903 -14.55796 -14.42964 -14.36506 -14.25295 -13.79646 -13.33323 -13.23838 -13.15851 -13.01353 -12.88335 -12.76904 -12.61379 -12.45797 -12.35592 -12.20984 -11.98568 -11.81906 -11.71440 -11.58129 -11.32941 -11.25070 -11.13773 -10.95978 -10.86230 -10.72390 -10.27206 -10.09732 -9.26403 -8.66171 -8.34011 -6.12133 1.27122 1.43020 1.47135 1.57836 1.62663 2.20019 2.28394 2.75230 2.99913 3.11605 3.33983 3.57942 3.68193 3.77952 3.82617 3.90133 3.94117 4.05900 4.13819 4.26562 4.29987 4.40553 4.44803 4.51001 4.51531 4.56442 4.60352 4.66183 4.68118 4.71095 4.73146 4.75177 4.81509 4.84246 4.98438 5.00005 5.13776 5.15008 5.19439 5.21493 5.26692 5.34131 5.37693 5.41806 5.42371 5.43492 5.51928 5.62511 6.00739 6.20572 6.45056 6.54451 7.07054 7.25580 8.75250 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.001950 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.712462 B =14357.703964 C =15645.435942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.570 6.570 13 N -0.701 5.701 14 C 0.168 3.832 15 C 0.030 3.970 16 N -0.653 5.653 17 C 0.062 3.938 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.193 4.193 26 C -0.155 4.155 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.415 0.585 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.354 0.646 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.097 0.903 50 H 0.110 0.890 51 H 0.116 0.884 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.069 -29.376 -6.996 32.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.449 6.449 13 N -0.355 5.355 14 C 0.044 3.956 15 C -0.063 4.063 16 N -0.283 5.283 17 C -0.066 4.066 18 C -0.141 4.141 19 C -0.104 4.104 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.233 4.233 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.252 0.748 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.175 0.825 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.115 0.885 50 H 0.128 0.872 51 H 0.135 0.865 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.780 -29.012 -7.249 31.787 hybrid contribution 1.605 0.593 0.331 1.743 sum 12.384 -28.419 -6.918 31.762 Atomic orbital electron populations 1.70187 1.07974 1.28594 1.48026 1.26149 0.96000 1.03365 0.93761 0.84938 0.78200 0.75942 0.78796 1.19320 1.20251 1.18153 1.23206 0.95355 0.91979 1.58831 0.89914 1.85567 1.10585 0.99223 1.97041 1.23351 1.03506 0.94345 1.06685 1.20072 0.86192 0.86702 0.75171 1.90685 1.17439 1.86154 1.50590 1.45657 1.10231 1.04648 1.74937 1.20663 0.94318 0.79496 1.01140 1.21565 0.98770 0.99524 0.86422 1.60133 1.06604 1.52283 1.09323 1.21968 0.94404 0.96433 0.93828 1.21514 0.98382 1.00369 0.93868 1.21097 0.97942 0.96329 0.94986 1.21602 0.99132 0.95355 0.98732 1.21555 0.98263 1.00454 0.95738 1.21524 1.01336 0.96878 0.95761 1.21549 0.98758 0.96501 0.99156 1.21545 0.98602 1.00367 0.94366 1.23663 1.02983 0.94049 1.02600 1.23266 0.96154 1.01106 0.98742 0.92003 0.87172 0.87485 0.74789 0.91708 0.92721 0.82545 0.93827 0.93231 0.92292 0.90788 0.92733 0.91388 0.92142 0.92920 0.91513 0.91881 0.91578 0.92878 0.91533 0.92493 0.91346 0.88464 0.87215 0.86535 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 44.09 29.55 68.60 2.03 46.11 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.24 6.16 71.23 0.44 -4.80 16 11 C 0.53 20.59 7.85 87.66 0.69 21.28 16 12 O -0.57 -27.44 15.86 -3.05 -0.05 -27.49 16 13 N -0.70 -19.14 5.49 -463.07 -2.54 -21.68 16 14 C 0.17 4.10 5.72 86.38 0.49 4.59 16 15 C 0.03 0.48 1.86 3.53 0.01 0.49 16 16 N -0.65 -10.00 6.68 -470.16 -3.14 -13.14 16 17 C 0.06 0.99 5.25 86.30 0.45 1.44 16 18 C -0.10 -1.43 4.92 30.59 0.15 -1.28 16 19 C -0.08 -1.18 2.19 -10.79 -0.02 -1.20 16 20 C -0.11 -1.33 4.96 30.59 0.15 -1.18 16 21 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 22 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 23 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 24 C -0.11 -1.43 5.20 30.59 0.16 -1.27 16 25 C -0.19 -2.39 10.07 30.62 0.31 -2.08 16 26 C -0.16 -1.90 9.70 30.62 0.30 -1.60 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 29 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 30 H 0.42 8.94 8.27 -92.70 -0.77 8.17 16 31 H 0.06 1.64 7.91 -2.39 -0.02 1.62 16 32 H 0.05 1.58 6.51 -2.39 -0.02 1.56 16 33 H 0.35 3.98 8.58 -89.70 -0.77 3.21 16 34 H 0.04 0.62 6.56 -2.39 -0.02 0.60 16 35 H 0.05 1.07 6.67 -2.39 -0.02 1.05 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.76 6.56 -2.39 -0.02 0.74 16 41 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.10 1.28 8.06 -2.39 -0.02 1.27 16 50 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -74.88 423.00 -0.44 -75.32 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.64 Total: 26.24 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.78 Total: -19.24 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -5.40 Total: -91.20 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -74.88 -0.44 -75.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269379320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.971 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds