Wall clock time and date at job start Sat Apr 11 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99708 * 2 1 4 4 H 1.48507 * 109.46936 * 275.72325 * 3 2 1 5 5 H 1.48491 * 109.47323 * 35.72444 * 3 2 1 6 6 H 1.48498 * 109.47020 * 155.72590 * 3 2 1 7 7 C 1.38806 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00211 * 338.08345 * 7 2 1 9 9 N 1.36941 * 120.00167 * 158.08503 * 7 2 1 10 10 C 1.46494 * 119.99837 * 322.65320 * 9 7 2 11 11 C 1.52999 * 109.47237 * 264.11339 * 10 9 7 12 12 C 1.53002 * 117.49737 * 243.75095 * 11 10 9 13 13 C 1.52999 * 117.49692 * 175.08961 * 11 10 9 14 14 C 1.46498 * 120.00059 * 142.65705 * 9 7 2 15 15 C 1.53038 * 109.46100 * 300.00045 * 14 9 7 16 16 C 1.53188 * 109.31535 * 181.37313 * 15 14 9 17 17 N 1.46926 * 108.77463 * 305.36316 * 16 15 14 18 18 C 1.34783 * 120.63091 * 233.58443 * 17 16 15 19 19 O 1.21287 * 119.99710 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99950 * 179.97438 * 18 17 16 21 21 F 1.39895 * 110.80562 * 56.37183 * 20 18 17 22 22 C 1.54810 * 110.90417 * 180.02562 * 20 18 17 23 23 C 1.54105 * 104.18747 * 139.11125 * 22 20 18 24 24 O 1.43751 * 107.41814 * 1.95625 * 23 22 20 25 25 C 1.44579 * 106.87035 * 333.66890 * 24 23 22 26 26 C 1.46923 * 118.74065 * 53.86077 * 17 16 15 27 27 C 1.53045 * 109.44917 * 60.05990 * 14 9 7 28 28 H 0.96996 * 119.99722 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47578 * 24.11347 * 10 9 7 30 30 H 1.09005 * 109.47136 * 144.11237 * 10 9 7 31 31 H 1.09000 * 115.55366 * 29.41320 * 11 10 9 32 32 H 1.08998 * 117.50247 * 359.97438 * 12 11 10 33 33 H 1.08997 * 117.50298 * 145.02171 * 12 11 10 34 34 H 1.09002 * 117.49251 * 214.97361 * 13 11 10 35 35 H 1.08994 * 117.50255 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.46045 * 180.02562 * 14 9 7 37 37 H 1.08997 * 109.49953 * 61.41851 * 15 14 9 38 38 H 1.09005 * 109.49903 * 301.32237 * 15 14 9 39 39 H 1.08998 * 109.59097 * 185.57456 * 16 15 14 40 40 H 1.09000 * 109.70503 * 65.21773 * 16 15 14 41 41 H 1.09001 * 110.49161 * 20.43683 * 22 20 18 42 42 H 1.08996 * 110.48976 * 257.78694 * 22 20 18 43 43 H 1.08999 * 109.87584 * 121.44934 * 23 22 20 44 44 H 1.08990 * 109.88328 * 242.45470 * 23 22 20 45 45 H 1.09003 * 110.50238 * 281.38159 * 25 24 23 46 46 H 1.08990 * 110.63913 * 158.44548 * 25 24 23 47 47 H 1.08994 * 109.58685 * 65.92294 * 26 17 16 48 48 H 1.09001 * 109.58905 * 186.35853 * 26 17 16 49 49 H 1.09005 * 109.49747 * 298.56964 * 27 14 9 50 50 H 1.08996 * 109.49717 * 58.63619 * 27 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3767 2.1163 -1.3932 5 1 1.5133 2.6148 0.8174 6 1 3.6029 1.4084 0.5756 7 6 2.0103 -1.2021 -0.0005 8 1 1.5289 -2.1038 0.3482 9 7 3.3055 -1.2447 -0.4432 10 6 3.7179 -0.4203 -1.5818 11 6 3.6576 -1.2539 -2.8633 12 6 4.9726 -1.5089 -3.6028 13 6 3.9421 -0.5384 -4.1855 14 6 4.2786 -2.1147 0.2219 15 6 4.4035 -1.7095 1.6924 16 6 5.4467 -2.5988 2.3761 17 7 5.0788 -4.0058 2.1671 18 6 4.9579 -4.8467 3.2134 19 8 5.1529 -4.4440 4.3407 20 6 4.5793 -6.2870 2.9826 21 9 5.4774 -6.9023 2.1040 22 6 4.4998 -7.0587 4.3223 23 6 3.2531 -7.9517 4.1705 24 8 2.7237 -7.7310 2.8523 25 6 3.1259 -6.4001 2.4560 26 6 4.8512 -4.4801 0.7953 27 6 3.8092 -3.5684 0.1296 28 1 -0.4849 0.8400 0.0004 29 1 3.0482 0.4348 -1.6728 30 1 4.7375 -0.0682 -1.4251 31 1 2.9130 -2.0499 -2.8719 32 1 5.8806 -1.0825 -3.1765 33 1 5.0929 -2.4724 -4.0981 34 1 3.3848 -0.8640 -5.0639 35 1 4.1718 0.5261 -4.1424 36 1 5.2482 -2.0145 -0.2659 37 1 3.4400 -1.8330 2.1868 38 1 4.7153 -0.6671 1.7574 39 1 5.4685 -2.3816 3.4441 40 1 6.4298 -2.4102 1.9448 41 1 4.3740 -6.3663 5.1547 42 1 5.3914 -7.6694 4.4643 43 1 3.5309 -8.9991 4.2877 44 1 2.5090 -7.6797 4.9190 45 1 2.4878 -5.6523 2.9269 46 1 3.1018 -6.2985 1.3711 47 1 5.7856 -4.4412 0.2355 48 1 4.4798 -5.5046 0.8198 49 1 2.8512 -3.6744 0.6388 50 1 3.6975 -3.8488 -0.9177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269632779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:16 Heat of formation + Delta-G solvation = -65.314052 kcal Electronic energy + Delta-G solvation = -32032.365626 eV Core-core repulsion = 27783.110832 eV Total energy + Delta-G solvation = -4249.254794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.19487 -40.36786 -38.91899 -37.93906 -36.86208 -34.88022 -32.39938 -32.01743 -31.04816 -30.60249 -29.29359 -26.44576 -25.46181 -23.73635 -23.21697 -22.70729 -21.99715 -21.64002 -20.19405 -20.03360 -19.07684 -18.00895 -17.13351 -16.62946 -16.37684 -16.07743 -15.51553 -15.32025 -15.12329 -15.05975 -14.70290 -14.38164 -14.24005 -14.12545 -13.95679 -13.47130 -13.37953 -13.07299 -12.88087 -12.52518 -12.43831 -12.32493 -12.09290 -11.94425 -11.81457 -11.59979 -11.38860 -11.26751 -11.18733 -10.89575 -10.78494 -10.67575 -10.42111 -10.32033 -10.08060 -10.00778 -9.90968 -9.73759 -9.49452 -9.15238 -8.68605 -8.52144 -6.91343 -6.04640 -3.47233 2.27121 2.72649 3.26143 3.42644 3.44949 3.49191 3.71643 4.01930 4.26204 4.27584 4.40477 4.46359 4.70476 4.73450 4.82468 4.92547 5.18735 5.23151 5.30806 5.34255 5.35573 5.37486 5.42550 5.44893 5.52292 5.55111 5.56927 5.65947 5.68903 5.80039 5.90583 5.92479 5.99995 6.03231 6.08454 6.20866 6.26393 6.42056 6.43399 6.44292 6.52449 6.55169 6.62326 6.87816 6.92394 6.97184 7.27384 7.89823 8.00059 8.32510 8.92330 9.65857 10.05385 11.10694 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003584 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.285799 B = 7810.850211 C = 8360.394453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.039 3.961 3 Si 0.873 3.127 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.165 3.835 11 C -0.146 4.146 12 C -0.189 4.189 13 C -0.192 4.192 14 C 0.182 3.818 15 C -0.141 4.141 16 C 0.112 3.888 17 N -0.589 5.589 18 C 0.510 3.490 19 O -0.529 6.529 20 C 0.070 3.930 21 F -0.179 7.179 22 C -0.165 4.165 23 C 0.045 3.955 24 O -0.364 6.364 25 C 0.034 3.966 26 C 0.096 3.904 27 C -0.141 4.141 28 H 0.263 0.737 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -11.212 2.230 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.393 4.393 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.039 3.961 11 C -0.167 4.167 12 C -0.226 4.226 13 C -0.229 4.229 14 C 0.075 3.925 15 C -0.180 4.180 16 C -0.010 4.010 17 N -0.321 5.321 18 C 0.294 3.706 19 O -0.406 6.406 20 C 0.048 3.952 21 F -0.160 7.160 22 C -0.203 4.203 23 C -0.031 4.031 24 O -0.283 6.283 25 C -0.043 4.043 26 C -0.027 4.027 27 C -0.181 4.181 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.136 0.864 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.764 -11.034 2.698 15.649 hybrid contribution 0.596 1.139 -0.186 1.298 sum 11.360 -9.896 2.512 15.274 Atomic orbital electron populations 1.69858 1.05991 1.26707 1.51336 1.25443 0.94991 0.97624 0.98089 0.86993 0.80704 0.85042 0.76884 1.21494 1.23059 1.19350 1.18636 0.85946 0.94147 1.40587 0.90296 1.44144 1.07654 1.49489 1.30402 1.20844 0.97290 0.92954 0.84990 1.23312 0.97681 1.02516 0.93151 1.22952 0.93940 1.00137 1.05619 1.22874 1.04058 0.97790 0.98212 1.20267 0.91856 0.89413 0.90955 1.22364 0.99241 0.98449 0.97992 1.21811 0.98150 0.78754 1.02335 1.48140 1.66600 1.10665 1.06692 1.20236 0.78221 0.86873 0.85271 1.90699 1.50362 1.77135 1.22355 1.22581 0.90791 0.90878 0.90901 1.92912 1.69086 1.83905 1.70082 1.23476 1.00645 0.99632 0.96561 1.23249 0.93963 1.00417 0.85496 1.88998 1.75801 1.31303 1.32171 1.24368 0.90448 0.86641 1.02824 1.22271 1.00319 0.98883 0.81230 1.22459 0.98471 0.96405 1.00750 0.92713 0.91910 0.94543 0.87486 0.89661 0.89786 0.89565 0.89577 0.92808 0.90307 0.91106 0.89346 0.91630 0.86906 0.88570 0.89051 0.91307 0.89233 0.86364 0.90954 0.89840 0.90702 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.97 55.49 0.78 -25.43 16 2 C 0.04 1.06 5.28 -17.43 -0.09 0.97 16 3 Si 0.87 21.17 24.99 -169.99 -4.25 16.92 16 4 H -0.29 -6.84 6.69 56.52 0.38 -6.47 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.65 8.69 -15.06 -0.13 -6.79 16 8 H 0.08 2.16 7.03 -52.48 -0.37 1.79 16 9 N -0.60 -12.45 2.02 -165.62 -0.34 -12.79 16 10 C 0.16 3.28 4.51 -4.05 -0.02 3.26 16 11 C -0.15 -2.55 6.00 -90.62 -0.54 -3.09 16 12 C -0.19 -2.68 10.18 -26.69 -0.27 -2.95 16 13 C -0.19 -2.90 10.25 -26.69 -0.27 -3.18 16 14 C 0.18 3.11 2.59 -67.89 -0.18 2.93 16 15 C -0.14 -2.37 5.30 -26.61 -0.14 -2.51 16 16 C 0.11 1.59 6.43 -3.71 -0.02 1.57 16 17 N -0.59 -8.21 2.97 -172.50 -0.51 -8.73 16 18 C 0.51 7.38 6.87 -10.98 -0.08 7.30 16 19 O -0.53 -8.89 14.87 5.55 0.08 -8.80 16 20 C 0.07 0.87 1.07 -89.76 -0.10 0.77 16 21 F -0.18 -2.29 15.37 2.25 0.03 -2.25 16 22 C -0.17 -1.73 6.25 -25.20 -0.16 -1.88 16 23 C 0.05 0.44 7.69 37.73 0.29 0.73 16 24 O -0.36 -4.54 11.54 -35.23 -0.41 -4.94 16 25 C 0.03 0.41 6.29 38.21 0.24 0.65 16 26 C 0.10 1.20 5.68 -3.48 -0.02 1.18 16 27 C -0.14 -2.13 5.32 -26.38 -0.14 -2.27 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.06 1.42 3.52 -51.93 -0.18 1.23 16 30 H 0.04 0.67 7.78 -51.93 -0.40 0.27 16 31 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 32 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 37 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.11 1.24 6.86 -51.93 -0.36 0.89 16 42 H 0.10 0.89 8.12 -51.93 -0.42 0.46 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 46 H 0.12 1.33 6.26 -51.93 -0.33 1.01 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.96 3.43 -51.93 -0.18 0.79 16 49 H 0.07 1.29 7.06 -51.93 -0.37 0.92 16 50 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -29.64 383.50 -8.46 -38.10 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.00 Total: 5.44 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.63 Total: -3.30 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.07 Total: -46.94 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.32 Total: -13.75 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.25 Total: 16.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.64 -8.46 -38.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269632779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.217 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds