Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47582 * 269.99899 * 3 2 1 5 5 H 1.48507 * 109.47174 * 30.00228 * 3 2 1 6 6 H 1.48509 * 109.46922 * 150.00012 * 3 2 1 7 7 C 1.38798 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99995 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99860 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46986 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99819 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.62994 * 359.97438 * 13 11 10 15 15 C 1.53192 * 108.77820 * 233.62963 * 14 13 11 16 16 C 1.53033 * 109.31270 * 305.36633 * 15 14 13 17 17 C 1.53041 * 109.53898 * 61.36218 * 16 15 14 18 18 H 1.09002 * 109.50075 * 58.58639 * 17 16 15 19 19 C 1.53001 * 109.52290 * 178.66811 * 17 16 15 20 20 C 1.53001 * 109.46833 * 184.85371 * 19 17 16 21 21 N 1.46908 * 109.47094 * 179.97438 * 20 19 17 22 22 C 1.46899 * 111.00151 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47149 * 180.02562 * 22 21 20 24 24 C 1.53786 * 113.60991 * 272.49795 * 23 22 21 25 25 C 1.53784 * 87.07769 * 220.01825 * 24 23 22 26 26 C 1.53772 * 87.08361 * 25.43319 * 25 24 23 27 27 C 1.46927 * 120.63425 * 180.02562 * 13 11 10 28 28 H 0.96998 * 120.00225 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46966 * 60.00302 * 10 9 7 30 30 H 1.08989 * 109.47135 * 299.99851 * 10 9 7 31 31 H 1.09006 * 109.58406 * 353.41879 * 14 13 11 32 32 H 1.09002 * 109.59019 * 113.83868 * 14 13 11 33 33 H 1.09000 * 109.49511 * 65.31256 * 15 14 13 34 34 H 1.08995 * 109.49883 * 185.40976 * 15 14 13 35 35 H 1.08999 * 109.45957 * 301.34633 * 16 15 14 36 36 H 1.09004 * 109.45285 * 181.37911 * 16 15 14 37 37 H 1.08992 * 109.47207 * 304.85203 * 19 17 16 38 38 H 1.09000 * 109.46940 * 64.85762 * 19 17 16 39 39 H 1.08996 * 109.47560 * 299.99824 * 20 19 17 40 40 H 1.09002 * 109.47557 * 60.00450 * 20 19 17 41 41 H 1.00897 * 110.99785 * 303.95522 * 21 20 19 42 42 H 1.09001 * 109.46826 * 300.00436 * 22 21 20 43 43 H 1.09002 * 109.46953 * 59.99737 * 22 21 20 44 44 H 1.08998 * 112.85348 * 43.80125 * 23 22 21 45 45 H 1.08995 * 113.61890 * 334.56383 * 24 23 22 46 46 H 1.09001 * 113.61578 * 105.47439 * 24 23 22 47 47 H 1.08999 * 113.61741 * 270.88025 * 25 24 23 48 48 H 1.09002 * 113.69029 * 139.99785 * 25 24 23 49 49 H 1.09004 * 113.61987 * 220.01701 * 26 25 24 50 50 H 1.09004 * 113.61709 * 89.11418 * 26 25 24 51 51 H 1.08997 * 109.58859 * 246.15938 * 27 13 11 52 52 H 1.09001 * 109.58530 * 6.44176 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0018 14 6 4.2960 -6.1173 0.0013 15 6 4.9152 -6.8923 -1.1661 16 6 4.5081 -8.3643 -1.0689 17 6 2.9853 -8.4816 -1.1649 18 1 2.6459 -8.0517 -2.1073 19 6 2.5810 -9.9558 -1.1011 20 6 1.0716 -10.0805 -1.3183 21 7 0.6834 -11.4961 -1.2577 22 6 -0.7625 -11.6548 -1.4630 23 6 -1.1277 -13.1388 -1.3925 24 6 -1.0060 -13.8679 -2.7411 25 6 -2.2997 -14.6104 -2.3671 26 6 -2.6400 -13.4056 -1.4742 27 6 2.3442 -7.7247 0.0019 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 4.5002 -5.0531 -0.1173 32 1 4.7211 -6.4705 0.9408 33 1 4.5577 -6.4774 -2.1085 34 1 6.0012 -6.8114 -1.1211 35 1 4.8443 -8.7719 -0.1155 36 1 4.9675 -8.9226 -1.8847 37 1 3.1068 -10.5107 -1.8780 38 1 2.8422 -10.3623 -0.1240 39 1 0.5456 -9.5256 -0.5415 40 1 0.8102 -9.6741 -2.2954 41 1 1.2054 -12.0431 -1.9258 42 1 -1.3014 -11.1110 -0.6872 43 1 -1.0361 -11.2589 -2.4410 44 1 -0.6369 -13.6569 -0.5687 45 1 -1.1136 -13.2108 -3.6040 46 1 -0.1336 -14.5178 -2.8089 47 1 -2.1290 -15.5320 -1.8107 48 1 -2.9864 -14.7421 -3.2033 49 1 -3.0868 -13.6822 -0.5192 50 1 -3.1944 -12.6220 -1.9908 51 1 2.6097 -8.2093 0.9414 52 1 1.2604 -7.7210 -0.1139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269698095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -59.727704 kcal Electronic energy + Delta-G solvation = -26844.524801 eV Core-core repulsion = 23161.725425 eV Total energy + Delta-G solvation = -3682.799375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24485 -39.94369 -38.84824 -36.98099 -34.73144 -34.59470 -32.91285 -31.29566 -29.73622 -27.72937 -27.23014 -26.45670 -26.13179 -24.35224 -23.09558 -22.26260 -21.42131 -20.37127 -20.22068 -19.47789 -18.18301 -17.36793 -16.98640 -16.88614 -16.65387 -16.31305 -16.03510 -15.77363 -15.53810 -15.47311 -15.09200 -14.73545 -14.53099 -14.44958 -14.18495 -14.09061 -13.76801 -13.44580 -13.34111 -13.22593 -13.15701 -13.01139 -12.89858 -12.74446 -12.60944 -12.34860 -12.15186 -11.92631 -11.72796 -11.70718 -11.60024 -11.44186 -11.30558 -11.15360 -11.08295 -10.95017 -10.83132 -10.27863 -9.65578 -9.43469 -8.69318 -8.35618 -6.14581 1.24469 1.41967 1.45061 1.55394 1.56181 2.10966 2.26408 2.98440 3.08893 3.24124 3.61014 3.68738 3.79077 3.82429 3.85093 3.91005 3.95362 3.99838 4.08322 4.23099 4.26931 4.31276 4.33536 4.40948 4.45227 4.49405 4.57577 4.61874 4.64927 4.77759 4.84169 4.85508 4.86330 4.88646 4.90883 4.99573 5.04173 5.07606 5.10583 5.12811 5.14476 5.26453 5.31096 5.35956 5.40323 5.50272 5.59871 5.61154 6.01748 6.18546 6.29796 6.48588 7.05272 7.13293 8.73710 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.001900 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.646131 B =14736.199652 C =16294.377704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.607 5.607 14 C 0.096 3.904 15 C -0.131 4.131 16 C -0.107 4.107 17 C -0.093 4.093 18 H 0.056 0.944 19 C -0.094 4.094 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.067 3.933 23 C -0.106 4.106 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.141 4.141 27 C 0.114 3.886 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.347 0.653 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -28.654 -4.410 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.340 5.340 14 C -0.026 4.026 15 C -0.169 4.169 16 C -0.144 4.144 17 C -0.113 4.113 18 H 0.074 0.926 19 C -0.132 4.132 20 C -0.074 4.074 21 N -0.318 5.318 22 C -0.062 4.062 23 C -0.125 4.125 24 C -0.175 4.175 25 C -0.176 4.176 26 C -0.179 4.179 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.165 0.835 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.099 0.901 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.906 -28.871 -3.711 30.163 hybrid contribution 0.932 1.762 -0.931 2.200 sum 8.838 -27.109 -4.642 28.889 Atomic orbital electron populations 1.70190 1.08024 1.28627 1.47965 1.26152 0.95978 1.03368 0.93674 0.84934 0.78218 0.75874 0.78826 1.19262 1.20277 1.18075 1.23194 0.95336 0.91867 1.58967 0.89870 1.85602 1.10695 0.99345 1.97025 1.23360 1.03335 0.94408 1.06229 1.20165 0.86029 0.86775 0.75259 1.90666 1.17337 1.85839 1.51031 1.48143 1.07533 1.05442 1.72927 1.22094 0.77701 1.02066 1.00728 1.21923 1.01950 0.95713 0.97348 1.21547 0.93117 0.96010 1.03740 1.21436 0.97150 0.95438 0.97232 0.92583 1.21435 0.93733 0.94266 1.03802 1.22008 0.97214 0.89101 0.99103 1.60488 1.05359 1.08904 1.57030 1.21951 0.88657 0.96674 0.98903 1.22556 0.96772 0.94207 0.98920 1.22987 0.98657 0.99255 0.96583 1.22794 0.97610 0.97432 0.99785 1.22953 0.95701 0.98695 1.00574 1.21774 0.99267 0.80162 0.99590 0.91987 0.87506 0.87595 0.89651 0.89107 0.92741 0.87908 0.90177 0.89887 0.89913 0.90175 0.92620 0.96289 0.83477 0.92394 0.95655 0.88559 0.90635 0.90739 0.89478 0.91199 0.91251 0.90547 0.90124 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.62 13.22 21.65 0.29 -56.34 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 10 C -0.12 -5.08 4.50 71.24 0.32 -4.76 16 11 C 0.53 21.06 7.72 87.66 0.68 21.74 16 12 O -0.57 -27.97 15.27 -3.05 -0.05 -28.02 16 13 N -0.61 -17.21 2.97 -818.99 -2.43 -19.64 16 14 C 0.10 1.88 6.34 86.36 0.55 2.43 16 15 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 16 C -0.11 -1.36 5.17 30.62 0.16 -1.20 16 17 C -0.09 -1.64 2.34 -10.73 -0.03 -1.67 16 18 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 19 C -0.09 -1.35 4.95 30.60 0.15 -1.20 16 20 C 0.06 1.03 5.44 86.30 0.47 1.50 16 21 N -0.69 -11.29 6.50 -513.87 -3.34 -14.63 16 22 C 0.07 1.15 5.52 86.30 0.48 1.63 16 23 C -0.11 -1.45 3.90 -10.27 -0.04 -1.49 16 24 C -0.14 -1.57 7.63 31.12 0.24 -1.33 16 25 C -0.14 -1.51 8.08 31.12 0.25 -1.26 16 26 C -0.14 -1.84 7.64 31.12 0.24 -1.60 16 27 C 0.11 2.79 5.32 86.35 0.46 3.25 16 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.11 4.02 7.94 -2.40 -0.02 4.00 16 30 H 0.11 4.00 7.69 -2.40 -0.02 3.98 16 31 H 0.09 1.75 5.93 -2.38 -0.01 1.74 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.29 6.70 -2.39 -0.02 1.28 16 40 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.35 4.58 8.73 -89.70 -0.78 3.80 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.03 0.45 7.85 -2.39 -0.02 0.44 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 0.91 7.90 -2.39 -0.02 0.89 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 51 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.06 1.95 5.72 -2.39 -0.01 1.93 16 Total: -1.00 -76.14 417.99 0.64 -75.49 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.10 Total: 22.64 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 5.22 Total: -15.41 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -5.49 Total: -90.61 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -76.14 0.64 -75.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269698095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.765 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds