Wall clock time and date at job start Sat Apr 11 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.52997 * 109.47144 * 119.99421 * 2 1 3 5 5 C 1.52998 * 109.47293 * 175.00244 * 4 2 1 6 6 N 1.46904 * 109.47338 * 180.02562 * 5 4 2 7 7 C 1.48673 * 111.00033 * 74.33203 * 6 5 4 8 8 C 1.54708 * 104.64094 * 158.40204 * 7 6 5 9 9 C 1.53026 * 104.57477 * 336.34373 * 8 7 6 10 10 C 1.53906 * 111.33907 * 121.71095 * 9 8 7 11 11 C 1.55132 * 101.45137 * 155.01242 * 10 9 8 12 12 N 1.47538 * 104.97245 * 324.24136 * 11 10 9 13 13 C 1.34774 * 125.67223 * 203.92025 * 12 11 10 14 14 O 1.21276 * 120.00124 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.00018 * 359.97438 * 13 12 11 16 16 S 1.81001 * 109.47313 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99900 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00334 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99616 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00184 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99618 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47000 * 90.00087 * 21 19 17 23 23 H 1.48495 * 109.46856 * 209.99994 * 21 19 17 24 24 H 1.48495 * 109.47081 * 330.00304 * 21 19 17 25 25 C 1.47344 * 108.65860 * 23.90613 * 12 11 10 26 26 C 1.48855 * 111.00253 * 190.00089 * 6 5 4 27 27 H 1.08998 * 109.47055 * 300.00116 * 1 2 3 28 28 H 1.08996 * 109.47092 * 60.00320 * 1 2 3 29 29 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47332 * 239.99412 * 2 1 3 31 31 H 1.09001 * 109.46918 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46813 * 299.99410 * 3 2 1 33 33 H 1.08998 * 109.47575 * 59.99561 * 3 2 1 34 34 H 1.09012 * 109.47248 * 55.00026 * 4 2 1 35 35 H 1.09006 * 109.47431 * 295.00646 * 4 2 1 36 36 H 1.08999 * 109.47277 * 60.00006 * 5 4 2 37 37 H 1.08997 * 109.46963 * 299.99737 * 5 4 2 38 38 H 1.08998 * 110.40208 * 39.61411 * 7 6 5 39 39 H 1.09000 * 110.40382 * 277.19304 * 7 6 5 40 40 H 1.08998 * 110.41314 * 217.56830 * 8 7 6 41 41 H 1.08998 * 110.40981 * 95.11723 * 8 7 6 42 42 H 1.09000 * 111.02689 * 273.05350 * 10 9 8 43 43 H 1.08998 * 111.03305 * 36.96529 * 10 9 8 44 44 H 1.09000 * 110.34171 * 205.36799 * 11 10 9 45 45 H 1.09007 * 110.34354 * 83.11568 * 11 10 9 46 46 H 1.09007 * 109.46918 * 299.99690 * 15 13 12 47 47 H 1.09004 * 109.46906 * 59.99313 * 15 13 12 48 48 H 0.97004 * 119.99869 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.96558 * 238.71194 * 25 12 11 50 50 H 1.08997 * 109.97139 * 117.44064 * 25 12 11 51 51 H 1.09000 * 110.47115 * 83.29122 * 26 6 5 52 52 H 1.09006 * 110.46558 * 320.69367 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1881 6 7 4.0545 -1.5238 2.3873 7 6 3.7703 -2.9813 2.3139 8 6 4.7806 -3.6265 3.2919 9 6 5.9248 -2.6148 3.3864 10 6 6.1464 -2.1539 4.8380 11 6 7.6368 -1.7249 4.8009 12 7 8.2859 -2.6811 3.8837 13 6 9.5953 -3.0000 3.8786 14 8 10.0207 -3.8033 3.0758 15 6 10.5310 -2.3585 4.8707 16 16 12.2082 -2.9880 4.6125 17 6 13.0660 -2.0970 5.8674 18 1 12.5292 -1.4099 6.5048 19 6 14.4317 -2.2782 6.0369 20 7 15.0859 -3.1159 5.2605 21 14 15.3412 -1.3330 7.3670 22 1 15.3321 -2.1189 8.6269 23 1 16.7439 -1.1013 6.9383 24 1 14.6706 -0.0276 7.5931 25 6 7.2645 -3.2295 2.9743 26 6 5.5375 -1.4397 2.4840 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6054 -1.7198 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 3.9995 0.1677 1.1421 37 1 3.8532 -1.3939 0.3005 38 1 3.9335 -3.3497 1.3012 39 1 2.7484 -3.1857 2.6335 40 1 5.1429 -4.5742 2.8938 41 1 4.3219 -3.7742 4.2696 42 1 5.5023 -1.3094 5.0829 43 1 5.9934 -2.9760 5.5372 44 1 8.0765 -1.7961 5.7957 45 1 7.7292 -0.7090 4.4167 46 1 10.5228 -1.2775 4.7313 47 1 10.2057 -2.5968 5.8834 48 1 16.0403 -3.2422 5.3788 49 1 7.2223 -4.3143 3.0728 50 1 7.4979 -2.9576 1.9449 51 1 5.8370 -0.4952 2.9383 52 1 5.9905 -1.5503 1.4987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269719811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:26 Heat of formation + Delta-G solvation = -47.033774 kcal Electronic energy + Delta-G solvation = -27270.506145 eV Core-core repulsion = 23588.257220 eV Total energy + Delta-G solvation = -3682.248925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.74391 -38.85779 -37.42884 -36.00983 -32.86023 -32.42105 -30.52343 -29.71509 -29.08027 -28.32514 -27.56785 -25.54204 -24.87097 -23.68197 -22.87860 -21.19704 -20.37467 -19.44218 -19.34826 -17.64165 -16.63145 -16.35336 -16.03640 -15.74682 -15.44648 -14.93736 -14.79538 -14.62623 -14.38542 -14.17675 -13.90939 -13.82547 -13.66006 -13.14712 -12.95490 -12.82929 -12.66083 -12.53101 -12.47163 -12.21580 -12.13230 -11.99808 -11.79193 -11.72550 -11.51860 -11.23585 -11.05744 -11.03881 -11.01767 -11.01228 -10.85189 -10.74409 -10.73846 -10.61529 -9.80528 -9.38265 -9.05899 -8.83792 -8.46769 -8.22186 -6.49365 -6.20837 -3.91444 2.93254 3.09026 3.22859 3.26813 3.31053 3.56165 3.63554 4.14207 4.17976 4.21393 4.28282 4.46828 4.47523 4.58603 4.69429 4.84408 4.88644 4.95798 5.05164 5.08796 5.10244 5.14334 5.20429 5.22622 5.27430 5.33154 5.33792 5.40752 5.45872 5.48540 5.52116 5.55227 5.59602 5.62924 5.64204 5.67651 5.72344 5.73256 5.78234 5.81541 5.87345 5.92966 5.96437 6.00022 6.01409 6.15366 6.44290 6.48683 6.69287 7.60252 7.70260 8.36012 8.58376 9.24365 10.86596 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.001801 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.146046 B =15540.689751 C =15902.891974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.107 4.107 5 C 0.042 3.958 6 N -0.510 5.510 7 C 0.032 3.968 8 C -0.110 4.110 9 C -0.075 4.075 10 C -0.114 4.114 11 C 0.099 3.901 12 N -0.626 5.626 13 C 0.548 3.452 14 O -0.517 6.517 15 C -0.146 4.146 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.123 3.877 26 C 0.048 3.952 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.557 5.846 -6.661 31.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.145 4.145 5 C -0.086 4.086 6 N -0.234 5.234 7 C -0.096 4.096 8 C -0.148 4.148 9 C -0.077 4.077 10 C -0.152 4.152 11 C -0.024 4.024 12 N -0.364 5.364 13 C 0.336 3.664 14 O -0.392 6.392 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C 0.000 4.000 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.104 0.896 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -29.910 4.813 -7.460 31.200 hybrid contribution 0.504 1.219 1.008 1.660 sum -29.406 6.032 -6.452 30.704 Atomic orbital electron populations 1.21825 0.95145 1.01655 1.01756 1.21112 0.95784 0.96493 0.98288 1.21897 1.01167 0.95878 1.01727 1.21574 0.94299 1.00623 0.97962 1.22371 0.96122 0.99305 0.90850 1.65446 1.10961 1.09837 1.37137 1.23222 0.99934 0.88110 0.98293 1.22269 0.94516 0.97602 1.00463 1.21436 0.94287 0.95538 0.96395 1.22735 0.95302 1.02137 0.95008 1.22394 0.92591 0.92939 0.94513 1.48620 1.07074 1.44797 1.35884 1.20031 0.80205 0.81513 0.84628 1.90704 1.75156 1.33794 1.39518 1.23507 1.02310 1.03615 1.00223 1.85397 0.93176 1.57694 1.47214 1.22863 0.95864 1.29446 1.20157 0.90928 1.24991 0.96472 0.95413 0.96676 1.70020 1.09218 1.33854 1.37184 0.86168 0.78690 0.79786 0.80862 1.20262 1.20745 1.19694 1.21869 0.85697 0.98449 0.94021 1.23053 0.87957 0.98658 0.98342 0.92625 0.92778 0.92790 0.91460 0.92500 0.92901 0.92552 0.92113 0.91087 0.90562 0.94637 0.93769 0.90096 0.90682 0.90260 0.89206 0.90348 0.90264 0.91447 0.89328 0.89316 0.92192 0.91226 0.91684 0.89566 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 2 C -0.10 -0.54 2.92 -90.62 -0.26 -0.81 16 3 C -0.15 -0.82 8.95 37.16 0.33 -0.49 16 4 C -0.11 -0.66 4.79 -26.73 -0.13 -0.78 16 5 C 0.04 0.29 4.58 -3.82 -0.02 0.28 16 6 N -0.51 -4.05 5.34 -230.19 -1.23 -5.28 16 7 C 0.03 0.23 5.94 -1.94 -0.01 0.22 16 8 C -0.11 -0.84 6.30 -25.82 -0.16 -1.01 16 9 C -0.08 -0.68 0.80 -153.92 -0.12 -0.80 16 10 C -0.11 -0.98 5.75 -25.13 -0.14 -1.12 16 11 C 0.10 1.09 6.58 -2.35 -0.02 1.07 16 12 N -0.63 -9.26 3.34 -170.81 -0.57 -9.83 16 13 C 0.55 10.86 7.87 -10.98 -0.09 10.77 16 14 O -0.52 -12.32 16.19 5.56 0.09 -12.23 16 15 C -0.15 -3.06 5.17 36.01 0.19 -2.87 16 16 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 17 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.12 1.52 6.08 -3.55 -0.02 1.50 16 26 C 0.05 0.41 5.47 -2.66 -0.01 0.40 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 32 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.38 7.48 -51.92 -0.39 -0.01 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.54 6.51 -51.93 -0.34 0.21 16 37 H 0.04 0.26 7.77 -51.93 -0.40 -0.14 16 38 H 0.04 0.33 7.74 -51.93 -0.40 -0.08 16 39 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 40 H 0.07 0.57 7.40 -51.93 -0.38 0.19 16 41 H 0.08 0.57 7.62 -51.93 -0.40 0.17 16 42 H 0.09 0.68 7.96 -51.93 -0.41 0.26 16 43 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 44 H 0.08 0.86 7.49 -51.93 -0.39 0.47 16 45 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 47 H 0.09 1.72 7.85 -51.91 -0.41 1.31 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 50 H 0.06 0.85 7.44 -51.93 -0.39 0.46 16 51 H 0.09 0.74 7.78 -51.93 -0.40 0.34 16 52 H 0.05 0.45 7.35 -51.93 -0.38 0.07 16 LS Contribution 414.52 15.07 6.25 6.25 Total: -1.00 -33.78 414.52 -11.49 -45.27 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -9.59 Total: -4.05 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 0.07 Total: -7.10 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -1.07 Total: -40.70 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.78 -11.49 -45.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269719811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.768 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds