Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.52997 * 109.47144 * 119.99421 * 2 1 3 5 5 C 1.52998 * 109.47293 * 175.00244 * 4 2 1 6 6 N 1.46904 * 109.47338 * 180.02562 * 5 4 2 7 7 C 1.48673 * 111.00033 * 74.33203 * 6 5 4 8 8 C 1.54708 * 104.64094 * 158.40204 * 7 6 5 9 9 C 1.53026 * 104.57477 * 336.34373 * 8 7 6 10 10 C 1.53906 * 111.33907 * 121.71095 * 9 8 7 11 11 C 1.55132 * 101.45137 * 155.01242 * 10 9 8 12 12 N 1.47538 * 104.97245 * 324.24136 * 11 10 9 13 13 C 1.34774 * 125.67223 * 203.92025 * 12 11 10 14 14 O 1.21276 * 120.00124 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.00018 * 359.97438 * 13 12 11 16 16 S 1.81001 * 109.47313 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99900 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00334 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99616 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00184 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99618 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47000 * 90.00087 * 21 19 17 23 23 H 1.48495 * 109.46856 * 209.99994 * 21 19 17 24 24 H 1.48495 * 109.47081 * 330.00304 * 21 19 17 25 25 C 1.47344 * 108.65860 * 23.90613 * 12 11 10 26 26 C 1.48855 * 111.00253 * 190.00089 * 6 5 4 27 27 H 1.08998 * 109.47055 * 300.00116 * 1 2 3 28 28 H 1.08996 * 109.47092 * 60.00320 * 1 2 3 29 29 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47332 * 239.99412 * 2 1 3 31 31 H 1.09001 * 109.46918 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46813 * 299.99410 * 3 2 1 33 33 H 1.08998 * 109.47575 * 59.99561 * 3 2 1 34 34 H 1.09012 * 109.47248 * 55.00026 * 4 2 1 35 35 H 1.09006 * 109.47431 * 295.00646 * 4 2 1 36 36 H 1.08999 * 109.47277 * 60.00006 * 5 4 2 37 37 H 1.08997 * 109.46963 * 299.99737 * 5 4 2 38 38 H 1.08998 * 110.40208 * 39.61411 * 7 6 5 39 39 H 1.09000 * 110.40382 * 277.19304 * 7 6 5 40 40 H 1.08998 * 110.41314 * 217.56830 * 8 7 6 41 41 H 1.08998 * 110.40981 * 95.11723 * 8 7 6 42 42 H 1.09000 * 111.02689 * 273.05350 * 10 9 8 43 43 H 1.08998 * 111.03305 * 36.96529 * 10 9 8 44 44 H 1.09000 * 110.34171 * 205.36799 * 11 10 9 45 45 H 1.09007 * 110.34354 * 83.11568 * 11 10 9 46 46 H 1.09007 * 109.46918 * 299.99690 * 15 13 12 47 47 H 1.09004 * 109.46906 * 59.99313 * 15 13 12 48 48 H 0.97004 * 119.99869 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.96558 * 238.71194 * 25 12 11 50 50 H 1.08997 * 109.97139 * 117.44064 * 25 12 11 51 51 H 1.09000 * 110.47115 * 83.29122 * 26 6 5 52 52 H 1.09006 * 110.46558 * 320.69367 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1881 6 7 4.0545 -1.5238 2.3873 7 6 3.7703 -2.9813 2.3139 8 6 4.7806 -3.6265 3.2919 9 6 5.9248 -2.6148 3.3864 10 6 6.1464 -2.1539 4.8380 11 6 7.6368 -1.7249 4.8009 12 7 8.2859 -2.6811 3.8837 13 6 9.5953 -3.0000 3.8786 14 8 10.0207 -3.8033 3.0758 15 6 10.5310 -2.3585 4.8707 16 16 12.2082 -2.9880 4.6125 17 6 13.0660 -2.0970 5.8674 18 1 12.5292 -1.4099 6.5048 19 6 14.4317 -2.2782 6.0369 20 7 15.0859 -3.1159 5.2605 21 14 15.3412 -1.3330 7.3670 22 1 15.3321 -2.1189 8.6269 23 1 16.7439 -1.1013 6.9383 24 1 14.6706 -0.0276 7.5931 25 6 7.2645 -3.2295 2.9743 26 6 5.5375 -1.4397 2.4840 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6054 -1.7198 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 3.9995 0.1677 1.1421 37 1 3.8532 -1.3939 0.3005 38 1 3.9335 -3.3497 1.3012 39 1 2.7484 -3.1857 2.6335 40 1 5.1429 -4.5742 2.8938 41 1 4.3219 -3.7742 4.2696 42 1 5.5023 -1.3094 5.0829 43 1 5.9934 -2.9760 5.5372 44 1 8.0765 -1.7961 5.7957 45 1 7.7292 -0.7090 4.4167 46 1 10.5228 -1.2775 4.7313 47 1 10.2057 -2.5968 5.8834 48 1 16.0403 -3.2422 5.3788 49 1 7.2223 -4.3143 3.0728 50 1 7.4979 -2.9576 1.9449 51 1 5.8370 -0.4952 2.9383 52 1 5.9905 -1.5503 1.4987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269719811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -67.883372 kcal Electronic energy + Delta-G solvation = -27271.410252 eV Core-core repulsion = 23588.257220 eV Total energy + Delta-G solvation = -3683.153032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67110 -40.05526 -38.23478 -36.81952 -34.59676 -33.76890 -31.52499 -30.90680 -29.73870 -29.29163 -27.99542 -27.68841 -25.82184 -24.47784 -23.62153 -21.81693 -20.86760 -20.79743 -20.23921 -19.50799 -18.05904 -17.36364 -16.89559 -16.84695 -16.45854 -16.37145 -16.15444 -15.68458 -15.33739 -15.18793 -14.90732 -14.71563 -14.51571 -14.30130 -13.94612 -13.81276 -13.64254 -13.58582 -13.33828 -13.16287 -13.04143 -12.89500 -12.83859 -12.76396 -12.62540 -12.57607 -12.34625 -12.05023 -11.92775 -11.74134 -11.69365 -11.47821 -11.43726 -11.37469 -11.22057 -11.15010 -10.98602 -10.29858 -9.74923 -9.44599 -8.69606 -8.35458 -6.14590 1.22750 1.42446 1.44316 1.53493 1.55885 2.07110 2.26461 2.92138 2.98711 3.22226 3.42321 3.46267 3.51329 3.85175 3.90064 4.00285 4.03938 4.13691 4.16434 4.21735 4.26464 4.32027 4.37950 4.42391 4.51900 4.56368 4.61884 4.66762 4.69629 4.72422 4.76872 4.81671 4.85237 4.90704 4.98094 4.99618 5.02778 5.06344 5.11165 5.15423 5.17586 5.24084 5.27960 5.32899 5.36849 5.40739 5.47950 5.55020 5.85884 6.08408 6.18871 6.36485 7.05483 7.08305 8.73893 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.001801 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.146046 B =15540.689751 C =15902.891974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.099 4.099 5 C 0.043 3.957 6 N -0.511 5.511 7 C 0.034 3.966 8 C -0.108 4.108 9 C -0.066 4.066 10 C -0.101 4.101 11 C 0.088 3.912 12 N -0.616 5.616 13 C 0.545 3.455 14 O -0.570 6.570 15 C -0.119 4.119 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.257 1.257 25 C 0.119 3.881 26 C 0.049 3.951 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.271 0.729 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.090 0.910 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.787 7.567 -4.996 34.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.136 4.136 5 C -0.085 4.085 6 N -0.234 5.234 7 C -0.094 4.094 8 C -0.146 4.146 9 C -0.067 4.067 10 C -0.139 4.139 11 C -0.033 4.033 12 N -0.351 5.351 13 C 0.333 3.667 14 O -0.449 6.449 15 C -0.270 4.270 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.003 4.003 26 C -0.079 4.079 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.108 0.892 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -32.212 6.560 -5.784 33.378 hybrid contribution 1.052 0.691 0.426 1.329 sum -31.160 7.252 -5.358 32.438 Atomic orbital electron populations 1.21813 0.94643 1.01851 1.01951 1.21099 0.96185 0.96396 0.97886 1.21889 1.00941 0.95885 1.01882 1.21494 0.93496 1.00638 0.98014 1.22382 0.96736 0.99066 0.90359 1.65481 1.10179 1.10258 1.37513 1.23242 1.00407 0.87641 0.98089 1.22272 0.93936 0.97102 1.01266 1.21365 0.92615 0.95926 0.96788 1.22729 0.93583 1.03096 0.94510 1.22757 0.93910 0.92727 0.93949 1.48577 1.05791 1.44426 1.36304 1.19810 0.81743 0.81180 0.83975 1.90680 1.76526 1.36217 1.41453 1.23301 0.97914 1.04140 1.01612 1.85593 0.99013 1.59477 1.48404 1.23196 0.96521 1.29581 1.20148 0.89857 1.26146 0.97416 0.96289 0.99238 1.70188 1.09665 1.35629 1.39281 0.84935 0.77050 0.78581 0.77299 1.19218 1.20257 1.18135 1.22053 0.86772 0.98317 0.93201 1.23011 0.88576 0.98541 0.97740 0.92558 0.92473 0.92603 0.91710 0.92836 0.92608 0.92550 0.92036 0.91474 0.90650 0.95107 0.94085 0.88959 0.90823 0.89021 0.87101 0.89682 0.89667 0.89962 0.87602 0.87453 0.91960 0.91938 0.92682 0.89157 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 71.98 0.66 -0.59 16 2 C -0.10 -0.94 2.92 -10.79 -0.03 -0.97 16 3 C -0.15 -1.45 8.95 71.98 0.64 -0.81 16 4 C -0.10 -1.05 4.79 30.59 0.15 -0.90 16 5 C 0.04 0.54 4.58 86.30 0.40 0.94 16 6 N -0.51 -7.02 5.34 -882.19 -4.71 -11.74 16 7 C 0.03 0.42 5.94 86.54 0.51 0.94 16 8 C -0.11 -1.41 6.30 31.19 0.20 -1.21 16 9 C -0.07 -1.05 0.80 -51.80 -0.04 -1.09 16 10 C -0.10 -1.42 5.75 31.63 0.18 -1.24 16 11 C 0.09 1.71 6.58 86.91 0.57 2.28 16 12 N -0.62 -17.68 3.34 -812.70 -2.71 -20.39 16 13 C 0.54 21.78 7.87 87.66 0.69 22.47 16 14 O -0.57 -28.20 16.19 -3.02 -0.05 -28.25 16 15 C -0.12 -4.94 5.17 71.24 0.37 -4.57 16 16 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 17 C -0.55 -31.59 9.50 67.96 0.65 -30.94 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 21 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 C 0.12 2.88 6.08 86.24 0.52 3.41 16 26 C 0.05 0.76 5.47 85.97 0.47 1.23 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.55 6.57 -2.39 -0.02 0.54 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.65 7.48 -2.38 -0.02 0.64 16 35 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.08 0.97 6.51 -2.39 -0.02 0.96 16 37 H 0.03 0.42 7.77 -2.39 -0.02 0.40 16 38 H 0.04 0.54 7.74 -2.39 -0.02 0.53 16 39 H 0.09 0.97 7.87 -2.39 -0.02 0.95 16 40 H 0.07 1.01 7.40 -2.39 -0.02 0.99 16 41 H 0.09 1.02 7.62 -2.39 -0.02 1.00 16 42 H 0.11 1.20 7.96 -2.39 -0.02 1.18 16 43 H 0.08 1.14 7.91 -2.39 -0.02 1.12 16 44 H 0.08 1.60 7.49 -2.39 -0.02 1.58 16 45 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 47 H 0.11 4.04 7.85 -2.39 -0.02 4.02 16 48 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.06 1.62 7.48 -2.39 -0.02 1.60 16 50 H 0.05 1.45 7.44 -2.39 -0.02 1.43 16 51 H 0.09 1.34 7.78 -2.39 -0.02 1.32 16 52 H 0.04 0.68 7.35 -2.38 -0.02 0.66 16 Total: -1.00 -75.46 414.52 0.95 -74.51 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.87 Total: 15.87 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 6.40 Total: -9.80 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -7.14 Total: -88.29 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -75.46 0.95 -74.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269719811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.627 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds