Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34637 * 117.00110 * 2 1 4 4 O 1.21505 * 120.00201 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99913 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99998 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47285 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99602 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00132 * 180.02562 * 7 6 5 10 10 C 1.47084 * 120.88391 * 180.02562 * 9 7 6 11 11 C 1.53233 * 108.52037 * 231.16042 * 10 9 7 12 12 N 1.46896 * 109.34217 * 306.16570 * 11 10 9 13 13 C 1.46894 * 111.00245 * 187.25407 * 12 11 10 14 14 H 1.09005 * 110.88858 * 303.87689 * 13 12 11 15 15 C 1.55155 * 111.00782 * 180.02562 * 13 12 11 16 16 C 1.54320 * 102.94665 * 206.42333 * 15 13 12 17 17 N 1.47026 * 107.26821 * 22.19373 * 16 15 13 18 18 C 1.36941 * 125.64671 * 181.02863 * 17 16 15 19 19 H 1.08000 * 119.99956 * 169.70744 * 18 17 16 20 20 C 1.38807 * 119.99805 * 349.69995 * 18 17 16 21 21 N 1.31621 * 119.99651 * 152.97452 * 20 18 17 22 22 Si 1.86799 * 120.00527 * 332.97574 * 20 18 17 23 23 H 1.48497 * 109.47078 * 85.20545 * 22 20 18 24 24 H 1.48510 * 109.46618 * 325.20846 * 22 20 18 25 25 H 1.48497 * 109.47239 * 205.21166 * 22 20 18 26 26 C 1.47427 * 108.70146 * 1.28231 * 17 16 15 27 27 C 1.46908 * 111.26852 * 63.10704 * 12 11 10 28 28 C 1.47077 * 120.88133 * 359.97126 * 9 7 6 29 29 H 1.09004 * 109.47488 * 59.99144 * 1 2 3 30 30 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46569 * 299.99979 * 1 2 3 32 32 H 0.97006 * 120.00184 * 0.02562 * 5 3 2 33 33 H 1.08999 * 109.47256 * 59.99496 * 6 5 3 34 34 H 1.09000 * 109.46692 * 299.99353 * 6 5 3 35 35 H 1.09000 * 109.63347 * 111.44651 * 10 9 7 36 36 H 1.09005 * 109.78538 * 350.96156 * 10 9 7 37 37 H 1.09004 * 109.49180 * 186.20456 * 11 10 9 38 38 H 1.09002 * 109.49478 * 66.13007 * 11 10 9 39 39 H 1.08998 * 110.72340 * 88.05428 * 15 13 12 40 40 H 1.09008 * 110.87102 * 324.85801 * 15 13 12 41 41 H 1.08998 * 109.88640 * 262.77643 * 16 15 13 42 42 H 1.09000 * 110.01019 * 141.67636 * 16 15 13 43 43 H 0.96999 * 120.00399 * 5.05430 * 21 20 18 44 44 H 1.08999 * 110.36466 * 94.48931 * 26 17 16 45 45 H 1.09007 * 110.36303 * 216.80653 * 26 17 16 46 46 H 1.09000 * 109.49503 * 56.85299 * 27 12 11 47 47 H 1.08992 * 109.49379 * 176.93951 * 27 12 11 48 48 H 1.09004 * 109.63136 * 248.55214 * 28 9 7 49 49 H 1.08997 * 109.63121 * 9.13170 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 -0.0005 6 6 4.0743 2.5754 0.0000 7 6 5.5683 2.3780 -0.0001 8 8 6.0318 1.2572 -0.0001 9 7 6.3893 3.4468 0.0009 10 6 7.8503 3.2765 0.0002 11 6 8.4396 4.1240 1.1328 12 7 7.9759 5.5109 0.9945 13 6 8.6525 6.3907 1.9568 14 1 8.5126 6.0318 2.9765 15 6 8.1624 7.8556 1.8112 16 6 9.3648 8.6751 2.3250 17 7 10.5573 7.8237 2.2033 18 6 11.8288 8.1736 2.5723 19 1 12.6081 7.4264 2.5994 20 6 12.1159 9.4887 2.9113 21 7 13.1041 9.7541 3.7392 22 14 11.1000 10.8818 2.1925 23 1 9.8855 11.0876 3.0217 24 1 10.6994 10.5372 0.8046 25 1 11.9077 12.1278 2.1796 26 6 10.1584 6.5332 1.6127 27 6 6.5163 5.6013 1.1345 28 6 5.8482 4.8144 0.0015 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 3.9375 0.4565 -0.0013 33 1 3.7818 3.1319 0.8905 34 1 3.7811 3.1329 -0.8895 35 1 8.2572 3.6081 -0.9551 36 1 8.0996 2.2275 0.1601 37 1 9.5279 4.0972 1.0786 38 1 8.1129 3.7253 2.0932 39 1 7.2829 8.0314 2.4307 40 1 7.9514 8.0927 0.7684 41 1 9.2089 8.9477 3.3688 42 1 9.4884 9.5744 1.7217 43 1 13.6778 9.0385 4.0550 44 1 10.3032 6.5495 0.5325 45 1 10.7282 5.7188 2.0604 46 1 6.2164 5.1821 2.0949 47 1 6.2098 6.6459 1.0816 48 1 6.0629 5.2936 -0.9537 49 1 4.7709 4.7818 0.1639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270521285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -57.309582 kcal Electronic energy + Delta-G solvation = -29985.808305 eV Core-core repulsion = 25756.820573 eV Total energy + Delta-G solvation = -4228.987732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.10046 -40.44781 -38.95851 -37.24789 -36.91437 -35.07243 -34.57297 -32.34361 -31.70200 -29.78056 -29.36379 -28.38775 -27.26754 -26.13527 -24.12080 -23.34485 -22.17811 -21.52432 -20.52955 -20.04164 -19.83986 -19.00217 -17.60277 -17.46134 -17.12436 -17.07221 -16.47773 -16.12412 -15.86550 -15.30489 -15.09425 -15.02692 -14.69526 -14.46242 -14.27676 -14.06901 -13.62353 -13.55028 -13.30166 -12.91911 -12.85380 -12.57875 -12.50268 -12.40061 -12.27485 -11.84301 -11.57082 -11.32057 -11.22177 -11.13016 -11.06791 -11.04855 -10.64257 -10.44007 -10.30068 -10.23970 -9.82469 -9.55614 -9.20978 -9.11591 -8.44776 -8.36700 -7.10535 -6.33784 -3.18624 1.57855 2.05109 2.35524 2.53972 3.41479 3.51484 3.65525 3.72531 3.80475 3.85661 4.52446 4.59506 4.62974 4.70134 4.70852 4.73957 4.79065 4.80429 4.92578 5.02830 5.05637 5.09311 5.12923 5.25110 5.31027 5.38934 5.47563 5.54609 5.54824 5.60393 5.65237 5.76952 5.84835 5.87950 6.02705 6.11137 6.14584 6.38827 6.49010 6.54123 6.76990 6.86007 6.90457 6.97413 7.13894 7.57732 7.71037 7.83925 8.33520 9.03383 9.59259 10.25731 11.14844 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.001937 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.346467 B =14453.181388 C =15045.262159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.651 3.349 4 O -0.572 6.572 5 N -0.699 5.699 6 C 0.119 3.881 7 C 0.512 3.488 8 O -0.538 6.538 9 N -0.604 5.604 10 C 0.118 3.882 11 C 0.041 3.959 12 N -0.527 5.527 13 C 0.068 3.932 14 H 0.052 0.948 15 C -0.121 4.121 16 C 0.117 3.883 17 N -0.609 5.609 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.020 4.020 21 N -0.918 5.918 22 Si 1.070 2.930 23 H -0.294 1.294 24 H -0.293 1.293 25 H -0.300 1.300 26 C 0.148 3.852 27 C 0.038 3.962 28 C 0.107 3.893 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.419 0.581 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.034 0.966 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.767 -17.104 -8.999 30.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.404 3.596 4 O -0.461 6.461 5 N -0.361 5.361 6 C -0.007 4.007 7 C 0.299 3.701 8 O -0.416 6.416 9 N -0.338 5.338 10 C -0.004 4.004 11 C -0.088 4.088 12 N -0.252 5.252 13 C -0.040 4.040 14 H 0.070 0.930 15 C -0.159 4.159 16 C -0.008 4.008 17 N -0.337 5.337 18 C -0.458 4.458 19 H 0.094 0.906 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.904 3.096 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.228 1.228 26 C 0.021 3.979 27 C -0.091 4.091 28 C -0.016 4.016 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.113 0.887 48 H 0.104 0.896 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.882 -15.420 -9.394 29.939 hybrid contribution 0.118 -2.076 0.752 2.211 sum -23.764 -17.496 -8.642 30.749 Atomic orbital electron populations 1.23245 0.73970 1.03692 1.02900 1.86255 1.24468 1.30669 1.86938 1.17951 0.82985 0.82371 0.76322 1.91020 1.64646 1.34813 1.55658 1.44206 1.03363 1.10347 1.78214 1.21062 0.89382 0.84927 1.05344 1.20321 0.88496 0.84778 0.76522 1.90714 1.77090 1.23334 1.50460 1.48108 1.07275 1.06076 1.72333 1.21807 0.77719 1.01199 0.99674 1.22488 1.01315 0.88069 0.96891 1.61945 1.04251 1.07039 1.51940 1.22917 0.96225 0.92141 0.92740 0.92982 1.22636 0.97735 0.93957 1.01577 1.21637 0.86469 0.94052 0.98639 1.44755 1.03798 1.11966 1.73169 1.20011 0.85338 0.95511 1.44924 0.90618 1.25797 1.01269 0.97610 0.97404 1.70927 1.21305 1.36369 1.27271 0.83701 0.74238 0.75636 0.76017 1.22190 1.22075 1.22792 1.21517 0.90142 0.89645 0.96581 1.22496 0.88671 1.01279 0.96668 1.22042 0.98034 0.80924 1.00610 0.91686 0.87776 0.91674 0.74240 0.87848 0.87751 0.90123 0.88538 0.88744 0.94421 0.91716 0.90501 0.94300 0.95318 0.92735 0.94854 0.94257 0.94368 0.88698 0.89571 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.56 101.05 1.07 1.38 16 2 O -0.37 -3.20 10.62 -40.32 -0.43 -3.63 16 3 C 0.65 6.55 8.75 54.05 0.47 7.02 16 4 O -0.57 -7.07 16.13 -19.28 -0.31 -7.38 16 5 N -0.70 -6.10 5.53 -66.47 -0.37 -6.46 16 6 C 0.12 0.90 4.52 -5.19 -0.02 0.87 16 7 C 0.51 4.80 7.78 -10.99 -0.09 4.71 16 8 O -0.54 -6.63 15.12 5.56 0.08 -6.54 16 9 N -0.60 -5.32 3.01 -172.44 -0.52 -5.84 16 10 C 0.12 1.14 6.59 -3.60 -0.02 1.12 16 11 C 0.04 0.45 5.52 -3.71 -0.02 0.43 16 12 N -0.53 -6.31 4.52 -223.62 -1.01 -7.32 16 13 C 0.07 1.05 2.73 -65.45 -0.18 0.87 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.12 -1.89 5.03 -24.90 -0.13 -2.02 16 16 C 0.12 2.51 4.95 -3.06 -0.02 2.49 16 17 N -0.61 -14.78 3.29 -169.93 -0.56 -15.34 16 18 C -0.33 -9.44 10.43 -15.06 -0.16 -9.60 16 19 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 20 C -0.02 -0.59 5.43 -17.43 -0.09 -0.68 16 21 N -0.92 -28.66 13.70 55.49 0.76 -27.90 16 22 Si 1.07 26.80 24.66 -169.99 -4.19 22.61 16 23 H -0.29 -6.90 6.76 56.52 0.38 -6.52 16 24 H -0.29 -7.02 6.71 56.52 0.38 -6.64 16 25 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 26 C 0.15 2.87 5.96 -2.41 -0.01 2.85 16 27 C 0.04 0.35 5.43 -3.67 -0.02 0.33 16 28 C 0.11 0.76 6.51 -3.58 -0.02 0.73 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.42 3.59 7.55 -40.82 -0.31 3.29 16 33 H 0.10 0.69 7.66 -51.93 -0.40 0.30 16 34 H 0.10 0.66 8.00 -51.93 -0.42 0.25 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.98 7.07 -51.93 -0.37 0.61 16 37 H 0.09 1.09 7.05 -51.93 -0.37 0.72 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 40 H 0.08 1.13 8.11 -51.92 -0.42 0.71 16 41 H 0.04 0.87 7.83 -51.93 -0.41 0.47 16 42 H 0.03 0.65 3.75 -51.93 -0.19 0.46 16 43 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.82 6.64 -51.93 -0.34 0.47 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.42 6.02 -51.93 -0.31 0.11 16 LS Contribution 382.90 15.07 5.77 5.77 Total: -1.00 -35.51 382.90 -7.79 -43.30 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.78 Total: -1.77 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.76 Total: 10.51 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -1.70 Total: -62.86 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.65 Total: -17.55 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.19 Total: 22.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.51 -7.79 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270521285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.012 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds