Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34637 * 117.00110 * 2 1 4 4 O 1.21505 * 120.00201 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99913 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99998 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47285 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99602 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00132 * 180.02562 * 7 6 5 10 10 C 1.47084 * 120.88391 * 180.02562 * 9 7 6 11 11 C 1.53233 * 108.52037 * 231.16042 * 10 9 7 12 12 N 1.46896 * 109.34217 * 306.16570 * 11 10 9 13 13 C 1.46894 * 111.00245 * 187.25407 * 12 11 10 14 14 H 1.09005 * 110.88858 * 303.87689 * 13 12 11 15 15 C 1.55155 * 111.00782 * 180.02562 * 13 12 11 16 16 C 1.54320 * 102.94665 * 206.42333 * 15 13 12 17 17 N 1.47026 * 107.26821 * 22.19373 * 16 15 13 18 18 C 1.36941 * 125.64671 * 181.02863 * 17 16 15 19 19 H 1.08000 * 119.99956 * 169.70744 * 18 17 16 20 20 C 1.38807 * 119.99805 * 349.69995 * 18 17 16 21 21 N 1.31621 * 119.99651 * 152.97452 * 20 18 17 22 22 Si 1.86799 * 120.00527 * 332.97574 * 20 18 17 23 23 H 1.48497 * 109.47078 * 85.20545 * 22 20 18 24 24 H 1.48510 * 109.46618 * 325.20846 * 22 20 18 25 25 H 1.48497 * 109.47239 * 205.21166 * 22 20 18 26 26 C 1.47427 * 108.70146 * 1.28231 * 17 16 15 27 27 C 1.46908 * 111.26852 * 63.10704 * 12 11 10 28 28 C 1.47077 * 120.88133 * 359.97126 * 9 7 6 29 29 H 1.09004 * 109.47488 * 59.99144 * 1 2 3 30 30 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46569 * 299.99979 * 1 2 3 32 32 H 0.97006 * 120.00184 * 0.02562 * 5 3 2 33 33 H 1.08999 * 109.47256 * 59.99496 * 6 5 3 34 34 H 1.09000 * 109.46692 * 299.99353 * 6 5 3 35 35 H 1.09000 * 109.63347 * 111.44651 * 10 9 7 36 36 H 1.09005 * 109.78538 * 350.96156 * 10 9 7 37 37 H 1.09004 * 109.49180 * 186.20456 * 11 10 9 38 38 H 1.09002 * 109.49478 * 66.13007 * 11 10 9 39 39 H 1.08998 * 110.72340 * 88.05428 * 15 13 12 40 40 H 1.09008 * 110.87102 * 324.85801 * 15 13 12 41 41 H 1.08998 * 109.88640 * 262.77643 * 16 15 13 42 42 H 1.09000 * 110.01019 * 141.67636 * 16 15 13 43 43 H 0.96999 * 120.00399 * 5.05430 * 21 20 18 44 44 H 1.08999 * 110.36466 * 94.48931 * 26 17 16 45 45 H 1.09007 * 110.36303 * 216.80653 * 26 17 16 46 46 H 1.09000 * 109.49503 * 56.85299 * 27 12 11 47 47 H 1.08992 * 109.49379 * 176.93951 * 27 12 11 48 48 H 1.09004 * 109.63136 * 248.55214 * 28 9 7 49 49 H 1.08997 * 109.63121 * 9.13170 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 -0.0005 6 6 4.0743 2.5754 0.0000 7 6 5.5683 2.3780 -0.0001 8 8 6.0318 1.2572 -0.0001 9 7 6.3893 3.4468 0.0009 10 6 7.8503 3.2765 0.0002 11 6 8.4396 4.1240 1.1328 12 7 7.9759 5.5109 0.9945 13 6 8.6525 6.3907 1.9568 14 1 8.5126 6.0318 2.9765 15 6 8.1624 7.8556 1.8112 16 6 9.3648 8.6751 2.3250 17 7 10.5573 7.8237 2.2033 18 6 11.8288 8.1736 2.5723 19 1 12.6081 7.4264 2.5994 20 6 12.1159 9.4887 2.9113 21 7 13.1041 9.7541 3.7392 22 14 11.1000 10.8818 2.1925 23 1 9.8855 11.0876 3.0217 24 1 10.6994 10.5372 0.8046 25 1 11.9077 12.1278 2.1796 26 6 10.1584 6.5332 1.6127 27 6 6.5163 5.6013 1.1345 28 6 5.8482 4.8144 0.0015 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 3.9375 0.4565 -0.0013 33 1 3.7818 3.1319 0.8905 34 1 3.7811 3.1329 -0.8895 35 1 8.2572 3.6081 -0.9551 36 1 8.0996 2.2275 0.1601 37 1 9.5279 4.0972 1.0786 38 1 8.1129 3.7253 2.0932 39 1 7.2829 8.0314 2.4307 40 1 7.9514 8.0927 0.7684 41 1 9.2089 8.9477 3.3688 42 1 9.4884 9.5744 1.7217 43 1 13.6778 9.0385 4.0550 44 1 10.3032 6.5495 0.5325 45 1 10.7282 5.7188 2.0604 46 1 6.2164 5.1821 2.0949 47 1 6.2098 6.6459 1.0816 48 1 6.0629 5.2936 -0.9537 49 1 4.7709 4.7818 0.1639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270521285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -86.679729 kcal Electronic energy + Delta-G solvation = -29987.081890 eV Core-core repulsion = 25756.820573 eV Total energy + Delta-G solvation = -4230.261317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81282 -41.20153 -40.07601 -38.35886 -37.69627 -35.81105 -35.72981 -34.23157 -32.55334 -31.19696 -30.40932 -29.41930 -28.02201 -27.15838 -25.40760 -24.62338 -22.96524 -22.28608 -22.18564 -21.27529 -20.62784 -19.73910 -19.51178 -18.32209 -17.89072 -17.77259 -17.20810 -17.08211 -17.02099 -16.72773 -15.99321 -15.85244 -15.63594 -15.49212 -15.19711 -15.04554 -15.01196 -14.47212 -14.40057 -14.27685 -13.96334 -13.76122 -13.47519 -13.35509 -13.00406 -12.96635 -12.92326 -12.63585 -12.34483 -12.25302 -12.18344 -11.89485 -11.81691 -11.80701 -11.64218 -11.53835 -11.08503 -11.06648 -10.57930 -10.48127 -9.92469 -9.32674 -9.16543 -8.65071 -5.42582 0.97220 1.35020 1.40487 1.53482 1.62733 1.72777 1.86774 2.52571 2.67193 3.08923 3.18738 3.25334 3.44744 3.60288 3.84563 3.91141 4.02022 4.13444 4.17500 4.20286 4.22872 4.29813 4.35186 4.37976 4.38555 4.40733 4.48277 4.59006 4.69547 4.73084 4.75717 4.83305 4.88540 4.94023 4.95922 4.97786 5.07494 5.14223 5.25586 5.28790 5.31623 5.56891 5.96167 6.05949 6.11255 6.19528 6.24998 6.83139 6.87490 7.14585 7.48790 8.13297 8.83836 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.001937 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.346467 B =14453.181388 C =15045.262159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.650 3.350 4 O -0.598 6.598 5 N -0.696 5.696 6 C 0.122 3.878 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.603 5.603 10 C 0.125 3.875 11 C 0.045 3.955 12 N -0.527 5.527 13 C 0.087 3.913 14 H 0.045 0.955 15 C -0.105 4.105 16 C 0.105 3.895 17 N -0.631 5.631 18 C -0.323 4.323 19 H 0.042 0.958 20 C -0.078 4.078 21 N -0.953 5.953 22 Si 1.114 2.886 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.307 1.307 26 C 0.144 3.856 27 C 0.034 3.966 28 C 0.109 3.891 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.419 0.581 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.247 0.753 44 H 0.034 0.966 45 H 0.027 0.973 46 H 0.039 0.961 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.591 -17.045 -10.406 34.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.403 3.597 4 O -0.489 6.489 5 N -0.359 5.359 6 C -0.004 4.004 7 C 0.302 3.698 8 O -0.452 6.452 9 N -0.336 5.336 10 C 0.002 3.998 11 C -0.084 4.084 12 N -0.252 5.252 13 C -0.022 4.022 14 H 0.063 0.937 15 C -0.143 4.143 16 C -0.020 4.020 17 N -0.359 5.359 18 C -0.452 4.452 19 H 0.060 0.940 20 C -0.272 4.272 21 N -0.596 5.596 22 Si 0.941 3.059 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.236 1.236 26 C 0.019 3.981 27 C -0.094 4.094 28 C -0.013 4.013 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.129 0.871 48 H 0.115 0.885 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -27.751 -15.400 -10.817 33.531 hybrid contribution 1.344 -2.256 1.189 2.883 sum -26.408 -17.656 -9.628 33.193 Atomic orbital electron populations 1.23543 0.72366 1.05715 1.02865 1.86267 1.26101 1.30011 1.86639 1.18067 0.83183 0.82419 0.76025 1.90995 1.65210 1.35646 1.57075 1.44273 1.03063 1.10904 1.77632 1.21176 0.87677 0.84703 1.06844 1.20604 0.89229 0.84254 0.75666 1.90706 1.77770 1.24719 1.52044 1.48165 1.06748 1.06893 1.71793 1.21644 0.78566 1.00379 0.99164 1.22436 1.00790 0.87942 0.97238 1.61910 1.06094 1.06733 1.50435 1.22557 0.93334 0.93220 0.93093 0.93684 1.22605 0.96263 0.92292 1.03117 1.21855 0.87409 0.94626 0.98106 1.44851 1.03230 1.14262 1.73572 1.19917 0.86908 0.94794 1.43549 0.94036 1.27096 1.02177 1.00429 0.97457 1.71042 1.22872 1.35871 1.29839 0.83149 0.73833 0.72422 0.76471 1.19373 1.20172 1.23556 1.21635 0.93319 0.87127 0.96045 1.22666 0.86370 1.02731 0.97631 1.22218 0.99452 0.79381 1.00270 0.91669 0.84798 0.91786 0.74231 0.86411 0.85949 0.89631 0.89313 0.89951 0.95007 0.88175 0.88672 0.95643 0.95686 0.94346 0.94766 0.95509 0.94319 0.87138 0.88542 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.56 113.37 1.20 1.65 16 2 O -0.38 -5.97 10.62 -55.47 -0.59 -6.56 16 3 C 0.65 12.00 8.75 129.79 1.14 13.14 16 4 O -0.60 -13.68 16.13 19.82 0.32 -13.36 16 5 N -0.70 -10.86 5.53 -594.62 -3.29 -14.15 16 6 C 0.12 1.47 4.52 85.63 0.39 1.86 16 7 C 0.51 8.45 7.78 87.66 0.68 9.13 16 8 O -0.57 -13.41 15.12 -3.04 -0.05 -13.45 16 9 N -0.60 -8.91 3.01 -817.85 -2.46 -11.37 16 10 C 0.13 2.21 6.59 86.35 0.57 2.78 16 11 C 0.04 0.92 5.52 86.38 0.48 1.40 16 12 N -0.53 -11.10 4.52 -861.39 -3.90 -14.99 16 13 C 0.09 2.47 2.73 46.38 0.13 2.59 16 14 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 15 C -0.10 -2.87 5.03 31.78 0.16 -2.71 16 16 C 0.10 4.25 4.95 86.73 0.43 4.68 16 17 N -0.63 -30.56 3.29 -691.55 -2.27 -32.84 16 18 C -0.32 -19.01 10.43 84.03 0.88 -18.13 16 19 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 20 C -0.08 -4.65 5.43 84.86 0.46 -4.19 16 21 N -0.95 -61.59 13.70 21.65 0.30 -61.29 16 22 Si 1.11 53.90 24.66 68.60 1.69 55.59 16 23 H -0.27 -11.71 6.76 99.48 0.67 -11.04 16 24 H -0.27 -12.36 6.71 99.48 0.67 -11.69 16 25 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 26 C 0.14 5.55 5.96 86.93 0.52 6.06 16 27 C 0.03 0.48 5.43 86.40 0.47 0.95 16 28 C 0.11 1.06 6.51 86.36 0.56 1.63 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.42 6.66 7.55 -92.70 -0.70 5.96 16 33 H 0.12 1.14 7.66 -2.39 -0.02 1.12 16 34 H 0.12 1.09 8.00 -2.39 -0.02 1.07 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.74 7.07 -2.38 -0.02 1.72 16 37 H 0.08 1.89 7.05 -2.38 -0.02 1.87 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 2.10 7.96 -2.39 -0.02 2.08 16 40 H 0.09 2.31 8.11 -2.38 -0.02 2.30 16 41 H 0.03 1.10 7.83 -2.39 -0.02 1.08 16 42 H 0.03 1.07 3.75 -2.39 -0.01 1.06 16 43 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.03 1.07 7.87 -2.38 -0.02 1.05 16 46 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 1.28 6.64 -2.39 -0.02 1.26 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.12 0.51 6.02 -2.39 -0.01 0.49 16 Total: -1.00 -80.02 382.90 -2.04 -82.06 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.15 Total: 9.52 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 8.05 Total: 20.84 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -11.62 Total: -134.64 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.31 Total: -33.37 kcal Atomic # 14 Polarization: 53.90 SS G_CDS: 1.69 Total: 55.59 kcal Total: -80.02 -2.04 -82.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270521285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.619 kcal (2) G-P(sol) polarization free energy of solvation -80.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds