Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34637 * 116.99855 * 2 1 4 4 O 1.21511 * 119.99879 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00164 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00253 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47187 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00042 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99979 * 180.02562 * 7 6 5 10 10 C 1.47081 * 120.87930 * 179.97438 * 9 7 6 11 11 C 1.53238 * 108.51911 * 231.20498 * 10 9 7 12 12 N 1.46898 * 109.34398 * 306.17087 * 11 10 9 13 13 C 1.46898 * 111.00533 * 187.25735 * 12 11 10 14 14 H 1.09008 * 110.77539 * 295.98259 * 13 12 11 15 15 C 1.55156 * 110.72003 * 59.21548 * 13 12 11 16 16 C 1.54917 * 101.58009 * 153.86891 * 15 13 12 17 17 N 1.47424 * 104.83041 * 322.99164 * 16 15 13 18 18 C 1.36937 * 125.64762 * 204.09035 * 17 16 15 19 19 H 1.07997 * 120.00252 * 168.01794 * 18 17 16 20 20 C 1.38814 * 119.99793 * 348.01486 * 18 17 16 21 21 N 1.31613 * 120.00383 * 325.89001 * 20 18 17 22 22 Si 1.86801 * 119.99519 * 145.88006 * 20 18 17 23 23 H 1.48506 * 109.47041 * 60.00615 * 22 20 18 24 24 H 1.48501 * 109.47649 * 300.00477 * 22 20 18 25 25 H 1.48502 * 109.47127 * 179.97438 * 22 20 18 26 26 C 1.47023 * 108.70354 * 24.35794 * 17 16 15 27 27 C 1.46902 * 111.26648 * 63.10654 * 12 11 10 28 28 C 1.47077 * 120.88120 * 0.02562 * 9 7 6 29 29 H 1.08997 * 109.47007 * 300.00147 * 1 2 3 30 30 H 1.09002 * 109.46699 * 60.00362 * 1 2 3 31 31 H 1.08999 * 109.46764 * 179.97438 * 1 2 3 32 32 H 0.97005 * 120.00005 * 359.97438 * 5 3 2 33 33 H 1.09003 * 109.47233 * 60.00137 * 6 5 3 34 34 H 1.08997 * 109.47060 * 300.00118 * 6 5 3 35 35 H 1.09001 * 109.62356 * 111.49719 * 10 9 7 36 36 H 1.08995 * 109.79105 * 351.01267 * 10 9 7 37 37 H 1.09006 * 109.49046 * 186.21470 * 11 10 9 38 38 H 1.08996 * 109.51830 * 66.14915 * 11 10 9 39 39 H 1.09000 * 111.00276 * 35.79585 * 15 13 12 40 40 H 1.09000 * 111.00411 * 271.94172 * 15 13 12 41 41 H 1.08993 * 110.36505 * 204.15581 * 16 15 13 42 42 H 1.08997 * 110.36244 * 81.83153 * 16 15 13 43 43 H 0.97004 * 119.99897 * 354.26944 * 21 20 18 44 44 H 1.09001 * 109.88438 * 118.13196 * 26 17 16 45 45 H 1.08995 * 109.88049 * 239.29243 * 26 17 16 46 46 H 1.08996 * 109.49496 * 56.85861 * 27 12 11 47 47 H 1.09000 * 109.48911 * 176.93970 * 27 12 11 48 48 H 1.09005 * 109.62943 * 248.50302 * 28 9 7 49 49 H 1.08999 * 109.63156 * 8.89091 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5682 2.3781 -0.0010 8 8 6.0318 1.2574 0.0000 9 7 6.3892 3.4470 -0.0009 10 6 7.8502 3.2767 -0.0002 11 6 8.4385 4.1249 1.1323 12 7 7.9749 5.5119 0.9928 13 6 8.6507 6.3923 1.9550 14 1 8.3956 6.1152 2.9780 15 6 10.1875 6.3588 1.7443 16 6 10.6072 7.7447 2.2949 17 7 9.5223 8.6564 1.8887 18 6 9.6367 10.0116 1.7284 19 1 8.8463 10.5669 1.2455 20 6 10.7686 10.6716 2.1868 21 7 11.3762 10.2560 3.2778 22 14 11.4295 12.1494 1.2549 23 1 10.3907 13.2096 1.2073 24 1 11.7863 11.7435 -0.1283 25 1 12.6366 12.6707 1.9453 26 6 8.2955 7.8707 1.6905 27 6 6.5152 5.6022 1.1316 28 6 5.8480 4.8146 -0.0004 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9375 0.4567 -0.0005 33 1 3.7817 3.1328 0.8889 34 1 3.7810 3.1323 -0.8911 35 1 8.2577 3.6078 -0.9554 36 1 8.0994 2.2279 0.1604 37 1 9.5269 4.0982 1.0790 38 1 8.1116 3.7270 2.0929 39 1 10.4349 6.2674 0.6866 40 1 10.6436 5.5546 2.3216 41 1 11.5523 8.0585 1.8519 42 1 10.6888 7.7123 3.3814 43 1 10.9876 9.5422 3.8074 44 1 7.5271 8.2003 2.3898 45 1 7.9420 7.9875 0.6661 46 1 6.2146 5.1836 2.0920 47 1 6.2088 6.6469 1.0777 48 1 6.0628 5.2938 -0.9556 49 1 4.7702 4.7818 0.1586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270521286.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -91.997713 kcal Electronic energy + Delta-G solvation = -29957.967860 eV Core-core repulsion = 25727.475938 eV Total energy + Delta-G solvation = -4230.491922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.83190 -41.22331 -40.08306 -38.33936 -37.70662 -35.85387 -35.78391 -33.99173 -32.53504 -31.13990 -30.02559 -29.38635 -28.02383 -26.93785 -25.89778 -24.64459 -22.96371 -22.31711 -21.91037 -21.23343 -20.64406 -19.74803 -19.55153 -18.32748 -17.87536 -17.78690 -17.21982 -16.96762 -16.83590 -16.46660 -15.98235 -15.77459 -15.69237 -15.42867 -15.13288 -15.03636 -14.93470 -14.87740 -14.32033 -14.28793 -13.84730 -13.61573 -13.45889 -13.27762 -12.97663 -12.70821 -12.64960 -12.57578 -12.43834 -12.30593 -11.95361 -11.90425 -11.88977 -11.83027 -11.80619 -11.67539 -11.61650 -11.10456 -10.50017 -10.45766 -9.94390 -9.34170 -9.02675 -8.38795 -5.26878 0.95451 1.32879 1.58519 1.61303 1.66144 1.84675 1.85725 2.59861 2.75840 3.13505 3.16585 3.22854 3.56171 3.60803 3.82065 3.92352 3.99137 4.13347 4.17241 4.18316 4.21519 4.27632 4.34347 4.35986 4.37596 4.43037 4.48920 4.58729 4.68151 4.71590 4.80872 4.85420 4.88536 4.90485 4.94259 5.01028 5.05495 5.10500 5.27480 5.29838 5.31543 5.68287 5.95642 6.04020 6.18195 6.22313 6.30053 6.85057 6.88824 7.13475 7.71611 8.30415 8.95623 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.001899 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.988522 B =14740.681585 C =15367.066499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.650 3.350 4 O -0.599 6.599 5 N -0.695 5.695 6 C 0.120 3.880 7 C 0.516 3.484 8 O -0.569 6.569 9 N -0.603 5.603 10 C 0.123 3.877 11 C 0.045 3.955 12 N -0.528 5.528 13 C 0.091 3.909 14 H 0.045 0.955 15 C -0.107 4.107 16 C 0.146 3.854 17 N -0.624 5.624 18 C -0.352 4.352 19 H 0.061 0.939 20 C -0.075 4.075 21 N -0.935 5.935 22 Si 1.109 2.891 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.292 1.292 26 C 0.147 3.853 27 C 0.035 3.965 28 C 0.113 3.887 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.420 0.580 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.021 0.979 42 H 0.001 0.999 43 H 0.253 0.747 44 H 0.010 0.990 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 -21.676 -8.062 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.403 3.597 4 O -0.491 6.491 5 N -0.357 5.357 6 C -0.006 4.006 7 C 0.305 3.695 8 O -0.449 6.449 9 N -0.336 5.336 10 C 0.001 3.999 11 C -0.084 4.084 12 N -0.253 5.253 13 C -0.017 4.017 14 H 0.063 0.937 15 C -0.146 4.146 16 C 0.020 3.980 17 N -0.352 5.352 18 C -0.481 4.481 19 H 0.079 0.921 20 C -0.272 4.272 21 N -0.577 5.577 22 Si 0.934 3.066 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.218 1.218 26 C 0.022 3.978 27 C -0.093 4.093 28 C -0.010 4.010 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.259 0.741 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.415 -20.440 -8.614 27.594 hybrid contribution -1.174 -1.191 1.403 2.183 sum -17.589 -21.631 -7.211 28.797 Atomic orbital electron populations 1.23548 0.72365 1.05753 1.02834 1.86268 1.26092 1.29908 1.86637 1.18077 0.83200 0.82429 0.76018 1.91002 1.65238 1.35730 1.57080 1.44243 1.03038 1.10828 1.77625 1.21166 0.87941 0.84763 1.06698 1.20531 0.89100 0.84246 0.75669 1.90699 1.77700 1.24483 1.51982 1.48154 1.07053 1.06549 1.71824 1.21715 0.78249 1.00666 0.99315 1.22494 1.01539 0.87081 0.97265 1.61947 1.05612 1.07268 1.50506 1.22340 0.94453 0.91888 0.93062 0.93716 1.22737 0.94122 0.95752 1.01954 1.21423 0.91506 0.89741 0.95288 1.44810 1.06165 1.02897 1.81300 1.19927 1.07832 0.83633 1.36663 0.92141 1.27022 0.97339 1.05812 0.96979 1.70919 1.45508 1.29375 1.11895 0.82938 0.75950 0.72855 0.74869 1.19990 1.20834 1.21811 1.21337 0.88504 0.89889 0.98100 1.22558 0.87212 1.01749 0.97811 1.22094 0.99324 0.79652 0.99899 0.91833 0.91718 0.84685 0.74133 0.86640 0.86151 0.89685 0.88738 0.88494 0.94767 0.90150 0.89314 0.96032 0.98089 0.93735 0.97188 0.94209 0.94241 0.89123 0.88910 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 10.56 113.37 1.20 1.69 16 2 O -0.38 -6.22 10.62 -55.46 -0.59 -6.81 16 3 C 0.65 12.69 8.75 129.79 1.14 13.83 16 4 O -0.60 -14.60 16.13 19.81 0.32 -14.28 16 5 N -0.69 -11.50 5.53 -594.64 -3.29 -14.79 16 6 C 0.12 1.64 4.52 85.63 0.39 2.03 16 7 C 0.52 8.95 7.78 87.66 0.68 9.64 16 8 O -0.57 -13.33 15.12 -3.03 -0.05 -13.38 16 9 N -0.60 -9.72 3.01 -818.02 -2.46 -12.19 16 10 C 0.12 2.14 6.59 86.35 0.57 2.71 16 11 C 0.04 0.88 5.46 86.38 0.47 1.35 16 12 N -0.53 -12.48 4.45 -863.15 -3.84 -16.32 16 13 C 0.09 2.83 2.64 46.11 0.12 2.96 16 14 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 15 C -0.11 -3.56 5.31 31.99 0.17 -3.39 16 16 C 0.15 6.82 5.34 86.86 0.46 7.28 16 17 N -0.62 -31.80 3.33 -691.98 -2.30 -34.10 16 18 C -0.35 -20.15 9.96 84.03 0.84 -19.31 16 19 H 0.06 3.44 8.02 -2.91 -0.02 3.42 16 20 C -0.07 -4.33 4.95 84.86 0.42 -3.91 16 21 N -0.94 -57.68 12.88 21.65 0.28 -57.40 16 22 Si 1.11 51.30 30.03 68.60 2.06 53.36 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 C 0.15 5.88 5.74 86.73 0.50 6.38 16 27 C 0.04 0.67 5.46 86.37 0.47 1.14 16 28 C 0.11 1.50 6.50 86.34 0.56 2.06 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.42 6.87 7.55 -92.70 -0.70 6.18 16 33 H 0.12 1.36 7.66 -2.39 -0.02 1.34 16 34 H 0.12 1.32 8.00 -2.39 -0.02 1.30 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.73 7.07 -2.39 -0.02 1.72 16 37 H 0.10 1.85 6.75 -2.38 -0.02 1.83 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.09 2.45 7.93 -2.39 -0.02 2.43 16 41 H 0.02 1.11 7.83 -2.39 -0.02 1.09 16 42 H 0.00 0.07 7.03 -2.39 -0.02 0.05 16 43 H 0.25 15.88 6.46 -92.71 -0.60 15.29 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.04 1.58 7.78 -2.39 -0.02 1.56 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.09 1.85 6.88 -2.39 -0.02 1.84 16 48 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.12 0.94 6.02 -2.39 -0.01 0.93 16 Total: -1.00 -76.58 388.37 -1.46 -78.04 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.43 Total: 13.41 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 7.99 Total: 24.46 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -11.62 Total: -134.79 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.32 Total: -34.47 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.06 Total: 53.36 kcal Total: -76.58 -1.46 -78.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270521286.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.962 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds