Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48495 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47170 * 299.99956 * 3 2 1 6 6 H 1.48497 * 109.47134 * 60.00024 * 3 2 1 7 7 C 1.38797 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00237 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99732 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46917 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00051 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00006 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99811 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47068 * 34.99431 * 14 13 11 16 16 C 1.52999 * 109.46691 * 155.00013 * 14 13 11 17 17 C 1.53006 * 109.46626 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47127 * 299.99539 * 17 16 14 19 19 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 20 20 C 1.52996 * 109.47131 * 179.97438 * 18 17 16 21 21 N 1.46901 * 109.47117 * 175.00119 * 20 18 17 22 22 C 1.46899 * 110.99727 * 180.02562 * 21 20 18 23 23 C 1.53007 * 109.47095 * 180.02562 * 22 21 20 24 24 C 1.52994 * 109.47395 * 180.02562 * 23 22 21 25 25 C 1.52999 * 117.49853 * 243.75047 * 24 23 22 26 26 C 1.53000 * 117.50108 * 175.08895 * 24 23 22 27 27 C 1.53002 * 109.46817 * 60.00361 * 18 17 16 28 28 C 1.52996 * 109.46972 * 299.99733 * 27 18 17 29 29 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47538 * 59.99620 * 10 9 7 31 31 H 1.09002 * 109.46890 * 299.99903 * 10 9 7 32 32 H 0.97000 * 119.99910 * 359.97438 * 13 11 10 33 33 H 1.08993 * 109.47839 * 59.99891 * 16 14 13 34 34 H 1.09000 * 109.47160 * 299.99453 * 16 14 13 35 35 H 1.09001 * 109.46801 * 59.99811 * 17 16 14 36 36 H 1.09001 * 109.46998 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47315 * 295.00431 * 20 18 17 38 38 H 1.09007 * 109.46739 * 55.00050 * 20 18 17 39 39 H 1.00898 * 111.00040 * 56.04854 * 21 20 18 40 40 H 1.09000 * 109.47397 * 299.99864 * 22 21 20 41 41 H 1.09005 * 109.47273 * 60.00060 * 22 21 20 42 42 H 1.09000 * 109.46861 * 300.00160 * 23 22 21 43 43 H 1.08995 * 109.46988 * 59.99685 * 23 22 21 44 44 H 1.09003 * 115.55115 * 29.41341 * 24 23 22 45 45 H 1.09007 * 117.49783 * 359.97438 * 25 24 23 46 46 H 1.09001 * 117.50446 * 145.01802 * 25 24 23 47 47 H 1.09002 * 117.49550 * 214.97766 * 26 24 23 48 48 H 1.09003 * 117.49645 * 359.97307 * 26 24 23 49 49 H 1.08996 * 109.47407 * 60.00219 * 27 18 17 50 50 H 1.09000 * 109.46986 * 179.97438 * 27 18 17 51 51 H 1.09001 * 109.46993 * 180.02562 * 28 27 18 52 52 H 1.09000 * 109.47380 * 299.99696 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8444 -6.3430 -0.0008 14 6 2.3306 -7.7151 -0.0008 15 1 1.4150 -7.7601 -0.5905 16 6 3.3763 -8.6511 -0.6100 17 6 2.8400 -10.0841 -0.6094 18 6 2.5435 -10.5171 0.8277 19 1 3.4592 -10.4716 1.4171 20 6 2.0066 -11.9498 0.8282 21 7 1.8349 -12.4079 2.2133 22 6 1.3201 -13.7832 2.2529 23 6 1.1542 -14.2239 3.7087 24 6 0.6187 -15.6565 3.7500 25 6 -0.7634 -15.8765 4.3682 26 6 0.4921 -16.3242 5.1208 27 6 1.4978 -9.5810 1.4369 28 6 2.0341 -8.1481 1.4363 29 1 -0.4850 0.8400 0.0004 30 1 3.1246 -3.7313 0.8894 31 1 3.1245 -3.7312 -0.8906 32 1 3.8011 -6.1834 -0.0004 33 1 4.2919 -8.6060 -0.0203 34 1 3.5879 -8.3424 -1.6337 35 1 1.9243 -10.1295 -1.1989 36 1 3.5848 -10.7509 -1.0438 37 1 1.0457 -11.9779 0.3144 38 1 2.7125 -12.6025 0.3144 39 1 1.2350 -11.7819 2.7295 40 1 0.3545 -13.8244 1.7490 41 1 2.0216 -14.4483 1.7492 42 1 2.1196 -14.1826 4.2131 43 1 0.4526 -13.5587 4.2120 44 1 0.8991 -16.2877 2.9067 45 1 -1.2911 -15.0006 4.7459 46 1 -1.3922 -16.6526 3.9320 47 1 0.6888 -17.3947 5.1793 48 1 0.7907 -15.7429 5.9932 49 1 0.5820 -9.6265 0.8475 50 1 1.2861 -9.8897 2.4606 51 1 1.2892 -7.4812 1.8707 52 1 2.9497 -8.1026 2.0259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272714086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -48.858640 kcal Electronic energy + Delta-G solvation = -26151.479579 eV Core-core repulsion = 22469.151522 eV Total energy + Delta-G solvation = -3682.328057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.90842 -38.61295 -38.07172 -36.17497 -33.99361 -32.42033 -31.49759 -30.99367 -29.65335 -28.13656 -25.50354 -24.75973 -23.29958 -22.83449 -22.40732 -21.42029 -20.73848 -20.31288 -19.86153 -17.81425 -16.54877 -16.40815 -16.18543 -16.13846 -15.44324 -15.11970 -14.79970 -14.72259 -14.51622 -14.38838 -14.04890 -13.88964 -13.67589 -13.35738 -13.13548 -12.75363 -12.66030 -12.37569 -12.35888 -12.16846 -11.99977 -11.83027 -11.76317 -11.62869 -11.31953 -11.12675 -11.06412 -11.00727 -10.94164 -10.74576 -10.66734 -10.47014 -10.31744 -10.27897 -9.78920 -9.32276 -9.06845 -8.82533 -8.77946 -8.21625 -6.48603 -6.20991 -3.91180 3.06327 3.13664 3.22060 3.29037 3.32318 3.34080 3.68881 3.74855 4.21303 4.31130 4.43233 4.46215 4.48737 4.53664 4.60241 4.79341 4.82131 4.89963 5.06709 5.09319 5.14337 5.16278 5.18397 5.19571 5.21111 5.25748 5.30583 5.33047 5.41721 5.44871 5.47206 5.55087 5.60227 5.65297 5.67745 5.71398 5.75589 5.86615 5.88002 5.91388 5.93259 6.03213 6.06320 6.16342 6.23339 6.30868 6.65725 6.73981 7.00370 7.60743 7.77782 8.36315 8.66852 9.24572 10.86522 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024608 B = 0.001466 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.567931 B =19092.919522 C =19800.788794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.147 3.853 15 H 0.086 0.914 16 C -0.124 4.124 17 C -0.108 4.108 18 C -0.087 4.087 19 H 0.081 0.919 20 C 0.064 3.936 21 N -0.692 5.692 22 C 0.061 3.939 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.183 4.183 26 C -0.181 4.181 27 C -0.112 4.112 28 C -0.128 4.128 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.342 0.658 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 -31.402 4.397 32.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.389 5.389 14 C 0.042 3.958 15 H 0.104 0.896 16 C -0.162 4.162 17 C -0.147 4.147 18 C -0.106 4.106 19 H 0.099 0.901 20 C -0.065 4.065 21 N -0.324 5.324 22 C -0.068 4.068 23 C -0.125 4.125 24 C -0.171 4.171 25 C -0.220 4.220 26 C -0.218 4.218 27 C -0.150 4.150 28 C -0.167 4.167 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.161 0.839 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.917 -31.811 4.454 32.495 hybrid contribution 1.474 1.476 -0.241 2.100 sum 6.391 -30.334 4.213 31.285 Atomic orbital electron populations 1.70029 1.05955 1.27319 1.47020 1.24988 0.95012 0.99014 0.94551 0.86122 0.79604 0.81913 0.77894 1.19613 1.20575 1.20569 1.22917 0.94945 0.91681 1.58758 0.90899 1.85388 1.05027 0.96333 1.96704 1.23539 1.06506 0.95553 1.04859 1.20302 0.86594 0.86296 0.74972 1.90693 1.15365 1.85597 1.47595 1.46100 1.09790 1.05418 1.77610 1.20895 0.97771 0.80666 0.96451 0.89639 1.21780 0.98422 0.94663 1.01371 1.21477 1.01363 0.95577 0.96292 1.21221 0.99586 0.93125 0.96625 0.90100 1.22002 0.99510 0.95937 0.89090 1.60502 1.54715 1.03233 1.13975 1.21930 0.97997 0.90314 0.96552 1.21146 1.01558 0.93265 0.96573 1.22279 1.00108 0.97639 0.97042 1.23068 0.90861 1.03527 1.04506 1.22973 1.02407 1.00876 0.95506 1.21559 0.98256 0.94406 1.00796 1.21903 1.01691 0.96185 0.96928 0.92255 0.89285 0.89306 0.76983 0.91398 0.91235 0.91670 0.91509 0.95156 0.91084 0.83943 0.95230 0.91075 0.90648 0.91906 0.87856 0.88777 0.88964 0.88892 0.88734 0.91948 0.91745 0.91101 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.90 16 11 C 0.53 9.96 7.81 -10.98 -0.09 9.88 16 12 O -0.52 -11.77 15.53 5.55 0.09 -11.68 16 13 N -0.74 -9.86 5.08 -53.81 -0.27 -10.13 16 14 C 0.15 1.72 2.46 -67.93 -0.17 1.56 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.12 -1.05 5.39 -26.73 -0.14 -1.20 16 17 C -0.11 -0.80 5.20 -26.73 -0.14 -0.94 16 18 C -0.09 -0.65 2.40 -90.62 -0.22 -0.87 16 19 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 20 C 0.06 0.45 5.14 -3.83 -0.02 0.43 16 21 N -0.69 -4.99 6.50 -113.77 -0.74 -5.73 16 22 C 0.06 0.39 5.64 -3.82 -0.02 0.37 16 23 C -0.09 -0.52 5.76 -26.73 -0.15 -0.68 16 24 C -0.15 -0.86 5.73 -90.62 -0.52 -1.38 16 25 C -0.18 -1.00 10.18 -26.69 -0.27 -1.28 16 26 C -0.18 -0.96 10.25 -26.69 -0.27 -1.24 16 27 C -0.11 -1.00 4.97 -26.73 -0.13 -1.13 16 28 C -0.13 -1.43 5.49 -26.73 -0.15 -1.58 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 32 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.34 2.41 6.98 -39.29 -0.27 2.14 16 40 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.39 7.88 -51.93 -0.41 -0.02 16 44 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 45 H 0.09 0.52 8.03 -51.93 -0.42 0.10 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.53 6.68 -51.93 -0.35 0.19 16 51 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 52 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 425.85 15.07 6.42 6.42 Total: -1.00 -33.42 425.85 -12.65 -46.07 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -9.77 Total: 1.99 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.87 Total: -13.97 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.28 Total: -41.41 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -33.42 -12.65 -46.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272714086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.786 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds