Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47276 * 270.00247 * 3 2 1 5 5 H 1.48493 * 109.47321 * 30.00428 * 3 2 1 6 6 H 1.48507 * 109.46906 * 150.00454 * 3 2 1 7 7 C 1.38799 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99710 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00175 * 179.97438 * 7 2 1 10 10 C 1.81004 * 100.00002 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46765 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00322 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99577 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99745 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47028 * 180.02562 * 14 13 11 16 16 H 1.08993 * 112.78994 * 75.81151 * 15 14 13 17 17 C 1.53516 * 113.47601 * 206.62371 * 15 14 13 18 18 C 1.53510 * 83.57493 * 140.78813 * 17 15 14 19 19 N 1.47480 * 113.47100 * 305.00138 * 15 14 13 20 20 C 1.46896 * 111.00138 * 106.53364 * 19 15 14 21 21 C 1.53006 * 109.47501 * 169.99671 * 20 19 15 22 22 C 1.52999 * 109.47000 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.46626 * 180.02562 * 22 21 20 24 24 C 1.54263 * 110.03168 * 292.16314 * 23 22 21 25 25 C 1.54887 * 104.19476 * 217.10685 * 24 23 22 26 26 C 1.54892 * 102.74850 * 37.94274 * 25 24 23 27 27 C 1.53874 * 110.02963 * 174.99501 * 23 22 21 28 28 H 0.97000 * 119.99749 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47043 * 59.99866 * 10 9 7 30 30 H 1.09001 * 109.46923 * 300.00226 * 10 9 7 31 31 H 0.96999 * 120.00109 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.47156 * 60.00599 * 14 13 11 33 33 H 1.09002 * 109.47342 * 300.00012 * 14 13 11 34 34 H 1.08992 * 114.16924 * 254.43660 * 17 15 14 35 35 H 1.09000 * 114.16992 * 26.94766 * 17 15 14 36 36 H 1.09005 * 113.47296 * 219.20643 * 18 17 15 37 37 H 1.08998 * 113.47947 * 88.74318 * 18 17 15 38 38 H 1.09004 * 109.47072 * 49.99487 * 20 19 15 39 39 H 1.09000 * 109.47017 * 289.99525 * 20 19 15 40 40 H 1.08993 * 109.46765 * 59.99547 * 21 20 19 41 41 H 1.09000 * 109.46866 * 299.99947 * 21 20 19 42 42 H 1.08993 * 109.47839 * 60.00073 * 22 21 20 43 43 H 1.09000 * 109.47160 * 299.99635 * 22 21 20 44 44 H 1.09003 * 110.01680 * 53.60635 * 23 22 21 45 45 H 1.09001 * 110.48897 * 335.78239 * 24 23 22 46 46 H 1.08996 * 110.48494 * 98.42798 * 24 23 22 47 47 H 1.08994 * 110.75834 * 279.62831 * 25 24 23 48 48 H 1.09001 * 110.91266 * 156.33098 * 25 24 23 49 49 H 1.09006 * 110.48668 * 203.37571 * 26 25 24 50 50 H 1.09004 * 110.59749 * 80.79536 * 26 25 24 51 51 H 1.08994 * 110.03583 * 238.56893 * 27 23 22 52 52 H 1.09006 * 110.03406 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5729 -3.2326 -0.0021 12 8 6.3439 -2.2964 -0.0025 13 7 6.0455 -4.4948 -0.0016 14 6 7.4906 -4.7359 -0.0033 15 6 7.7562 -6.2427 -0.0029 16 1 7.5858 -6.7017 -0.9767 17 6 9.1029 -6.6262 0.6266 18 6 8.3011 -7.7987 1.2086 19 7 7.0954 -6.9554 1.1063 20 6 5.9479 -7.7343 0.6223 21 6 5.4434 -8.6483 1.7408 22 6 4.2485 -9.4599 1.2364 23 6 3.7437 -10.3734 2.3552 24 6 4.7909 -11.4644 2.6595 25 6 3.9467 -12.7267 2.9645 26 6 2.7824 -12.6127 1.9493 27 6 2.4667 -11.1034 1.9036 28 1 -0.4850 0.8401 0.0004 29 1 3.6432 -3.4319 -0.8906 30 1 3.6439 -3.4315 0.8893 31 1 5.4289 -5.2436 -0.0009 32 1 7.9347 -4.2882 0.8858 33 1 7.9324 -4.2897 -0.8942 34 1 9.8648 -6.9210 -0.0948 35 1 9.4659 -5.9169 1.3704 36 1 8.5737 -8.0440 2.2352 37 1 8.2760 -8.6730 0.5582 38 1 6.2535 -8.3394 -0.2313 39 1 5.1500 -7.0560 0.3198 40 1 5.1378 -8.0432 2.5943 41 1 6.2412 -9.3266 2.0434 42 1 4.5545 -10.0650 0.3830 43 1 3.4506 -8.7819 0.9335 44 1 3.5417 -9.7880 3.2522 45 1 5.4294 -11.6330 1.7923 46 1 5.3896 -11.1871 3.5270 47 1 3.5710 -12.7022 3.9874 48 1 4.5252 -13.6336 2.7887 49 1 1.9154 -13.1735 2.2986 50 1 3.0943 -12.9672 0.9668 51 1 1.6452 -10.8732 2.5820 52 1 2.2068 -10.8073 0.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323183709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = -34.762855 kcal Electronic energy + Delta-G solvation = -26902.393870 eV Core-core repulsion = 23220.677052 eV Total energy + Delta-G solvation = -3681.716818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82201 -38.98971 -38.79364 -34.79307 -34.19042 -32.41250 -31.02234 -30.03532 -29.07007 -27.66866 -27.51263 -25.57985 -24.06422 -23.39596 -21.63417 -20.86343 -20.43032 -20.07112 -19.81004 -17.89147 -16.73886 -16.48537 -16.24273 -16.06637 -15.61164 -15.30997 -15.14465 -14.94908 -14.74109 -14.42400 -13.79274 -13.70125 -13.63414 -13.46835 -13.17158 -12.97520 -12.77075 -12.61962 -12.34345 -11.92458 -11.80702 -11.65096 -11.55433 -11.45029 -11.40150 -11.24989 -11.20724 -11.01094 -10.98459 -10.94013 -10.81655 -10.62275 -10.54737 -10.50812 -9.83019 -9.47758 -9.22143 -8.98312 -8.85437 -8.46421 -6.88242 -6.26451 -3.97612 2.80486 3.05823 3.30083 3.35520 3.52958 3.54886 3.75117 4.08434 4.20857 4.28017 4.33028 4.35793 4.42175 4.58740 4.67039 4.78675 4.83658 4.87590 4.91359 5.00461 5.05764 5.08701 5.11683 5.12638 5.24299 5.26298 5.29908 5.33528 5.38424 5.40886 5.44465 5.48871 5.51141 5.57048 5.63019 5.64554 5.74278 5.77161 5.80857 5.84972 5.88351 5.93247 5.97342 5.97954 6.05483 6.06826 6.14933 6.62938 6.72742 7.69500 7.96751 8.44193 8.57217 9.19892 10.82815 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.002287 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.017996 B =12241.866383 C =14844.525404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.530 3.470 12 O -0.522 6.522 13 N -0.730 5.730 14 C 0.141 3.859 15 C 0.013 3.987 16 H 0.083 0.917 17 C -0.136 4.136 18 C -0.001 4.001 19 N -0.462 5.462 20 C 0.017 3.983 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.092 4.092 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.396 0.604 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.223 -27.630 2.756 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.397 6.397 13 N -0.385 5.385 14 C 0.016 3.984 15 C -0.097 4.097 16 H 0.101 0.899 17 C -0.174 4.174 18 C -0.130 4.130 19 N -0.185 5.185 20 C -0.112 4.112 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.111 4.111 24 C -0.156 4.156 25 C -0.165 4.165 26 C -0.163 4.163 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.231 0.769 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.044 -25.600 3.333 29.879 hybrid contribution -1.058 -1.248 -0.796 1.819 sum 13.986 -26.848 2.537 30.378 Atomic orbital electron populations 1.69943 1.05909 1.27722 1.48210 1.24717 0.94461 0.98973 0.93219 0.86728 0.81925 0.83254 0.79910 1.19231 1.19970 1.15893 1.22326 0.88339 0.97511 1.58613 0.89426 1.84773 1.09173 1.00170 1.97410 1.23270 0.94208 1.04267 1.05653 1.20253 0.90521 0.82343 0.75319 1.90691 1.58769 1.42219 1.48021 1.45892 1.07426 1.07842 1.77299 1.21234 0.81870 0.92865 1.02415 1.23719 0.95293 0.95611 0.95093 0.89896 1.23181 0.95337 0.98375 1.00486 1.23709 0.91452 0.95629 1.02228 1.69010 1.02032 1.16820 1.30613 1.22779 0.95050 0.96365 0.96957 1.21517 0.97680 0.97512 0.98331 1.21697 0.97700 0.97889 0.97724 1.21782 0.94698 0.96092 0.98481 1.22444 0.97405 0.94613 1.01145 1.22506 0.96849 0.97848 0.99258 1.22357 0.98246 0.96387 0.99298 1.22235 0.97461 0.94823 1.01567 0.91979 0.88720 0.88533 0.76928 0.90969 0.91340 0.90337 0.88348 0.89577 0.91386 0.94018 0.90664 0.90958 0.91955 0.92116 0.91631 0.90930 0.91684 0.91853 0.91621 0.91858 0.91924 0.91832 0.91835 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 2 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 22.08 27.74 -169.99 -4.71 17.36 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.23 -6.06 6.74 56.52 0.38 -5.68 16 7 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.47 6.16 36.00 0.22 -2.25 16 11 C 0.53 9.85 7.85 -10.99 -0.09 9.76 16 12 O -0.52 -11.65 15.86 5.56 0.09 -11.57 16 13 N -0.73 -10.02 5.46 -60.29 -0.33 -10.35 16 14 C 0.14 1.64 5.81 -4.04 -0.02 1.62 16 15 C 0.01 0.11 3.25 -71.43 -0.23 -0.13 16 16 H 0.08 0.63 7.77 -51.93 -0.40 0.22 16 17 C -0.14 -0.91 8.00 -26.20 -0.21 -1.12 16 18 C 0.00 -0.01 7.00 -7.54 -0.05 -0.06 16 19 N -0.46 -4.01 5.98 -236.49 -1.41 -5.43 16 20 C 0.02 0.13 4.58 -3.82 -0.02 0.12 16 21 C -0.11 -0.83 5.17 -26.73 -0.14 -0.97 16 22 C -0.11 -0.78 4.34 -26.73 -0.12 -0.89 16 23 C -0.09 -0.64 2.93 -89.50 -0.26 -0.90 16 24 C -0.12 -0.74 5.53 -25.07 -0.14 -0.88 16 25 C -0.13 -0.76 6.91 -24.74 -0.17 -0.93 16 26 C -0.13 -0.78 6.83 -25.07 -0.17 -0.95 16 27 C -0.12 -0.85 6.46 -25.61 -0.17 -1.01 16 28 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 31 H 0.40 4.61 6.22 -40.82 -0.25 4.35 16 32 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.39 7.70 -51.93 -0.40 -0.01 16 38 H 0.04 0.29 7.56 -51.93 -0.39 -0.10 16 39 H 0.08 0.63 6.33 -51.93 -0.33 0.30 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.43 7.04 -51.93 -0.37 0.07 16 42 H 0.06 0.40 8.00 -51.93 -0.42 -0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.40 7.76 -51.93 -0.40 0.00 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 52 H 0.06 0.45 7.67 -51.93 -0.40 0.06 16 LS Contribution 417.06 15.07 6.29 6.29 Total: -1.00 -33.61 417.06 -12.33 -45.94 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -9.68 Total: 0.27 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.35 Total: -10.78 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.97 Total: -41.86 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.61 -12.33 -45.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323183709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.181 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds