Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 119.99714 * 2 1 4 4 O 1.21276 * 120.00654 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99884 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.55664 * 55.12391 * 5 3 2 7 7 C 1.53296 * 109.50841 * 295.00084 * 5 3 2 8 8 N 1.47157 * 108.38422 * 187.77481 * 7 5 3 9 9 C 1.34774 * 120.97924 * 230.51472 * 8 7 5 10 10 O 1.21585 * 120.00158 * 355.10633 * 9 8 7 11 11 N 1.34780 * 119.99887 * 175.11072 * 9 8 7 12 12 C 1.46494 * 120.00365 * 184.75871 * 11 9 8 13 13 C 1.53041 * 109.46088 * 275.03207 * 12 11 9 14 14 C 1.53195 * 109.31149 * 178.59747 * 13 12 11 15 15 N 1.46927 * 108.76420 * 54.65288 * 14 13 12 16 16 C 1.36939 * 120.62803 * 126.36202 * 15 14 13 17 17 H 1.08003 * 119.99714 * 216.70339 * 16 15 14 18 18 C 1.38811 * 120.00459 * 36.70565 * 16 15 14 19 19 N 1.31627 * 119.99731 * 11.49874 * 18 16 15 20 20 Si 1.86800 * 120.00373 * 191.49297 * 18 16 15 21 21 H 1.48506 * 109.46572 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46736 * 119.99583 * 20 18 16 23 23 H 1.48497 * 109.47493 * 240.00175 * 20 18 16 24 24 C 1.46927 * 118.74233 * 306.38120 * 15 14 13 25 25 C 1.53040 * 109.46261 * 154.97094 * 12 11 9 26 26 C 1.47154 * 118.03608 * 50.53365 * 8 7 5 27 27 C 1.53293 * 108.38281 * 309.46627 * 26 8 7 28 28 O 1.42957 * 109.51426 * 175.25682 * 5 3 2 29 29 H 1.09002 * 109.46798 * 299.99902 * 1 2 3 30 30 H 1.08996 * 109.47267 * 59.99762 * 1 2 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99995 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.68404 * 68.04695 * 7 5 3 34 34 H 1.08999 * 109.68155 * 307.49065 * 7 5 3 35 35 H 0.97001 * 119.99948 * 4.76044 * 11 9 8 36 36 H 1.09010 * 109.45895 * 34.99871 * 12 11 9 37 37 H 1.09005 * 109.49284 * 298.55715 * 13 12 11 38 38 H 1.08998 * 109.50158 * 58.65949 * 13 12 11 39 39 H 1.08998 * 109.59849 * 294.86583 * 14 13 12 40 40 H 1.08998 * 109.58698 * 174.43189 * 14 13 12 41 41 H 0.96995 * 119.99667 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58257 * 293.82694 * 24 15 14 43 43 H 1.08990 * 109.58882 * 173.39840 * 24 15 14 44 44 H 1.09003 * 109.49801 * 301.33722 * 25 12 11 45 45 H 1.08996 * 109.49321 * 61.43660 * 25 12 11 46 46 H 1.08995 * 109.67905 * 69.18878 * 26 8 7 47 47 H 1.08995 * 109.67909 * 189.74392 * 26 8 7 48 48 H 1.08997 * 109.51203 * 172.22766 * 27 26 8 49 49 H 1.09008 * 109.51223 * 292.32736 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0104 0.5802 -0.8435 7 6 4.1584 0.5563 1.3086 8 7 5.6176 0.7379 1.3657 9 6 6.4357 -0.2989 1.6342 10 8 5.9681 -1.3839 1.9212 11 7 7.7723 -0.1329 1.5847 12 6 8.6607 -1.2823 1.7737 13 6 8.8908 -1.5084 3.2697 14 6 9.7917 -2.7320 3.4645 15 7 11.0235 -2.5406 2.6869 16 6 12.2504 -2.6512 3.2851 17 1 13.0579 -1.9994 2.9856 18 6 12.4564 -3.6010 4.2762 19 7 11.5573 -4.5393 4.4855 20 14 14.0094 -3.5476 5.3128 21 1 14.8529 -2.4038 4.8821 22 1 13.6446 -3.3822 6.7427 23 1 14.7651 -4.8140 5.1380 24 6 10.9141 -2.2278 1.2555 25 6 10.0003 -1.0100 1.0855 26 6 6.1570 2.0850 1.1213 27 6 5.5471 2.6215 -0.1788 28 8 4.1234 2.5101 -0.1119 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 3.9194 -0.5068 1.3360 34 1 3.6925 1.0597 2.1558 35 1 8.1461 0.7477 1.4240 36 1 8.2028 -2.1706 1.3384 37 1 9.3715 -0.6301 3.7006 38 1 7.9340 -1.6790 3.7633 39 1 9.2746 -3.6260 3.1158 40 1 10.0392 -2.8392 4.5206 41 1 11.7010 -5.2027 5.1783 42 1 10.4885 -3.0806 0.7267 43 1 11.9019 -2.0022 0.8542 44 1 9.8332 -0.8259 0.0242 45 1 10.4703 -0.1365 1.5372 46 1 5.8922 2.7423 1.9495 47 1 7.2414 2.0342 1.0245 48 1 5.8249 3.6677 -0.3067 49 1 5.9193 2.0402 -1.0225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323642600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -70.651021 kcal Electronic energy + Delta-G solvation = -30555.941361 eV Core-core repulsion = 26326.375101 eV Total energy + Delta-G solvation = -4229.566260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.01260 -39.91055 -38.56036 -37.37540 -35.16641 -34.81122 -34.50591 -32.50190 -31.81482 -30.05503 -29.56478 -28.64015 -26.85388 -25.18918 -24.62189 -23.02601 -22.24099 -21.79412 -20.87656 -19.90083 -19.49900 -18.52050 -17.68934 -17.30851 -16.79327 -16.49239 -16.00602 -15.74225 -15.51492 -15.10563 -14.99348 -14.82235 -14.55369 -14.18677 -13.92327 -13.68445 -13.54139 -13.41253 -13.08155 -13.02497 -12.69186 -12.60088 -12.50117 -12.30999 -12.03643 -11.48176 -11.33863 -11.13081 -10.96403 -10.79832 -10.60087 -10.41179 -10.26796 -10.21926 -10.13423 -10.04932 -9.82487 -9.58390 -9.55895 -8.98171 -8.61076 -8.44963 -6.57346 -5.80964 -3.33976 2.08320 2.39309 2.45214 3.17355 3.34772 3.42535 3.44458 3.55254 3.77627 4.19444 4.28320 4.43699 4.46504 4.57396 4.68953 4.76234 4.85507 5.06774 5.11161 5.21044 5.25961 5.31005 5.39299 5.39426 5.41855 5.46017 5.62443 5.79469 5.90569 6.00366 6.06321 6.21686 6.30913 6.40419 6.50926 6.53479 6.65448 6.71464 6.81715 6.93120 6.96820 7.00340 7.34178 7.62965 7.77022 7.79453 7.91024 8.48936 8.58077 9.20495 9.80353 10.42450 11.27153 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002146 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.770548 B =13044.705352 C =13624.413776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.732 5.732 3 C 0.524 3.476 4 O -0.514 6.514 5 C 0.060 3.940 6 H 0.090 0.910 7 C 0.111 3.889 8 N -0.637 5.637 9 C 0.708 3.292 10 O -0.582 6.582 11 N -0.737 5.737 12 C 0.169 3.831 13 C -0.147 4.147 14 C 0.178 3.822 15 N -0.591 5.591 16 C -0.260 4.260 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.898 5.898 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.149 3.851 25 C -0.139 4.139 26 C 0.075 3.925 27 C 0.048 3.952 28 O -0.351 6.351 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.406 0.594 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.389 0.611 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.114 0.886 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 12.234 -10.892 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.386 5.386 3 C 0.308 3.692 4 O -0.388 6.388 5 C -0.002 4.002 6 H 0.108 0.892 7 C -0.013 4.013 8 N -0.377 5.377 9 C 0.410 3.590 10 O -0.459 6.459 11 N -0.392 5.392 12 C 0.065 3.935 13 C -0.188 4.188 14 C 0.052 3.948 15 N -0.314 5.314 16 C -0.390 4.390 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.540 5.540 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.022 3.978 25 C -0.179 4.179 26 C -0.049 4.049 27 C -0.030 4.030 28 O -0.268 6.268 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.240 0.760 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.225 0.775 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.132 0.868 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.729 12.190 -10.566 23.970 hybrid contribution 1.378 -0.163 0.564 1.498 sum -16.351 12.027 -10.002 22.628 Atomic orbital electron populations 1.21577 0.78765 1.02630 1.02534 1.45719 1.08134 1.08463 1.76293 1.19976 0.88551 0.84099 0.76587 1.90741 1.69669 1.31111 1.47293 1.22315 0.92083 0.86495 0.99354 0.89192 1.21907 0.79959 1.03282 0.96158 1.47255 1.05832 1.08148 1.76504 1.15847 0.81647 0.83433 0.78066 1.90932 1.75266 1.24700 1.54992 1.45709 1.03963 1.12647 1.76903 1.20942 0.88408 0.86996 0.97139 1.22583 1.00090 1.01731 0.94366 1.20665 0.84993 0.91269 0.97869 1.44005 1.02486 1.82587 1.02307 1.19119 0.89326 1.12597 1.17978 0.92049 1.25320 0.97534 0.94916 1.01198 1.70009 1.35346 1.15250 1.33443 0.86240 0.82985 0.77461 0.80143 1.20158 1.21527 1.21574 1.20856 0.96605 0.92793 0.87556 1.22361 0.95364 1.01642 0.98506 1.22364 0.99405 0.84195 0.98917 1.23086 0.80648 1.02919 0.96304 1.88083 1.20952 1.23414 1.94380 0.91956 0.92050 0.90215 0.76003 0.87388 0.90413 0.77508 0.90097 0.92824 0.92720 0.95914 0.90390 0.93565 0.96187 0.92286 0.92716 0.91945 0.90134 0.89005 0.86848 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.73 -5.05 5.68 -67.07 -0.38 -5.43 16 3 C 0.52 5.35 7.18 -10.98 -0.08 5.27 16 4 O -0.51 -7.38 16.51 -14.28 -0.24 -7.62 16 5 C 0.06 0.56 3.19 -27.73 -0.09 0.47 16 6 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 7 C 0.11 1.10 5.87 -3.53 -0.02 1.08 16 8 N -0.64 -6.94 3.02 -178.01 -0.54 -7.48 16 9 C 0.71 10.24 8.27 -86.92 -0.72 9.52 16 10 O -0.58 -10.68 15.51 5.29 0.08 -10.60 16 11 N -0.74 -9.92 4.99 -58.63 -0.29 -10.21 16 12 C 0.17 2.83 2.38 -67.89 -0.16 2.67 16 13 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 14 C 0.18 4.27 5.24 -3.71 -0.02 4.25 16 15 N -0.59 -14.51 2.95 -172.32 -0.51 -15.02 16 16 C -0.26 -7.02 9.51 -15.06 -0.14 -7.16 16 17 H 0.06 1.62 7.86 -52.48 -0.41 1.21 16 18 C 0.01 0.28 5.00 -17.43 -0.09 0.20 16 19 N -0.90 -26.05 11.53 55.49 0.64 -25.41 16 20 Si 0.90 21.41 29.57 -169.99 -5.03 16.38 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 25 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 26 C 0.07 0.58 6.63 -3.53 -0.02 0.56 16 27 C 0.05 0.35 6.98 37.31 0.26 0.61 16 28 O -0.35 -3.70 9.92 -55.07 -0.55 -4.24 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.41 1.86 8.83 -40.82 -0.36 1.50 16 33 H 0.11 1.07 7.12 -51.93 -0.37 0.70 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.39 4.09 6.11 -40.82 -0.25 3.84 16 36 H 0.08 1.53 7.65 -51.92 -0.40 1.13 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 2.08 6.56 -51.93 -0.34 1.74 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.09 0.57 5.66 -51.93 -0.29 0.27 16 48 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -36.00 389.62 -9.58 -45.59 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.89 Total: 1.98 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -0.76 Total: 16.20 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -1.08 Total: -63.55 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.70 Total: -22.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.00 -9.58 -45.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323642600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.066 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds