Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 110.27316 * 2 1 4 4 C 1.34777 * 119.99828 * 300.42128 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 S 1.81000 * 109.47389 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99715 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00516 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99710 * 179.97438 * 8 7 6 11 11 N 1.31634 * 120.00163 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46850 * 90.00589 * 12 10 8 14 14 H 1.48498 * 109.47329 * 210.00016 * 12 10 8 15 15 H 1.48499 * 109.47220 * 330.01003 * 12 10 8 16 16 C 1.54593 * 110.30883 * 237.90595 * 2 1 3 17 17 C 1.54934 * 102.92607 * 219.02796 * 16 2 1 18 18 N 1.48538 * 103.22587 * 37.41407 * 17 16 2 19 19 C 1.46898 * 111.00081 * 200.28003 * 18 17 16 20 20 C 1.52990 * 109.47291 * 290.12696 * 19 18 17 21 21 C 1.52998 * 109.47168 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47294 * 179.97438 * 21 20 19 23 23 C 1.53777 * 113.61625 * 274.14071 * 22 21 20 24 24 C 1.53955 * 87.02132 * 220.04503 * 23 22 21 25 25 C 1.53773 * 113.61778 * 176.53203 * 22 21 20 26 26 C 1.48120 * 105.86366 * 320.83295 * 18 17 16 27 27 H 1.09000 * 109.47527 * 59.30250 * 1 2 3 28 28 H 1.08999 * 109.47308 * 179.30016 * 1 2 3 29 29 H 1.09002 * 109.47419 * 299.30262 * 1 2 3 30 30 H 0.97001 * 120.00384 * 120.70574 * 3 2 1 31 31 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 32 32 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 33 33 H 0.96991 * 119.99795 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.72584 * 337.38978 * 16 2 1 35 35 H 1.09009 * 110.72335 * 100.66756 * 16 2 1 36 36 H 1.08993 * 110.67145 * 155.84990 * 17 16 2 37 37 H 1.09003 * 110.66466 * 278.81684 * 17 16 2 38 38 H 1.09004 * 109.46977 * 50.12758 * 19 18 17 39 39 H 1.08999 * 109.46929 * 170.12631 * 19 18 17 40 40 H 1.09001 * 109.47644 * 300.00057 * 20 19 18 41 41 H 1.08999 * 109.47187 * 60.00094 * 20 19 18 42 42 H 1.08997 * 109.47451 * 300.00025 * 21 20 19 43 43 H 1.09004 * 109.47047 * 60.00475 * 21 20 19 44 44 H 1.09005 * 112.84922 * 45.33392 * 22 21 20 45 45 H 1.09003 * 113.61500 * 334.56055 * 23 22 21 46 46 H 1.08998 * 113.62107 * 105.46493 * 23 22 21 47 47 H 1.08995 * 113.53605 * 270.81013 * 24 23 22 48 48 H 1.09008 * 113.74157 * 139.93863 * 24 23 22 49 49 H 1.09002 * 113.61311 * 254.53320 * 25 22 21 50 50 H 1.08999 * 113.61639 * 25.42924 * 25 22 21 51 51 H 1.09002 * 109.94473 * 265.94726 * 26 18 17 52 52 H 1.09007 * 109.99908 * 144.58640 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7167 2.2111 -1.0065 5 8 1.0035 1.8281 -1.9096 6 6 2.2439 3.6229 -1.0098 7 16 1.6405 4.4889 -2.4802 8 6 2.3863 6.0661 -2.2339 9 1 3.0017 6.2427 -1.3641 10 6 2.1838 7.0815 -3.1583 11 7 1.4343 6.8663 -4.2188 12 14 2.9740 8.7539 -2.8969 13 1 4.3128 8.7746 -3.5392 14 1 2.1183 9.8057 -3.5024 15 1 3.1191 9.0107 -1.4415 16 6 2.0666 -0.7703 -1.2283 17 6 3.2870 -1.5323 -0.6535 18 7 2.8345 -1.9221 0.7066 19 6 3.9795 -2.2234 1.5761 20 6 4.6404 -3.5244 1.1166 21 6 5.8333 -3.8379 2.0219 22 6 6.4939 -5.1394 1.5628 23 6 5.8494 -6.4014 2.1600 24 6 7.2757 -6.9609 2.3111 25 6 7.7593 -5.5018 2.3578 26 6 2.0645 -0.7672 1.2236 27 1 -0.3634 0.5246 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3634 0.5030 0.8962 30 1 2.6080 1.6806 0.7222 31 1 1.8986 4.1418 -0.1156 32 1 3.3337 3.6037 -1.0206 33 1 1.2925 7.5760 -4.8646 34 1 1.3178 -1.4681 -1.6032 35 1 2.3774 -0.0789 -2.0116 36 1 3.5068 -2.4152 -1.2535 37 1 4.1578 -0.8788 -0.5994 38 1 4.7023 -1.4093 1.5203 39 1 3.6355 -2.3340 2.6045 40 1 3.9178 -4.3385 1.1724 41 1 4.9844 -3.4138 0.0883 42 1 6.5559 -3.0238 1.9657 43 1 5.4897 -3.9485 3.0504 44 1 6.6284 -5.1875 0.4822 45 1 5.3461 -6.2264 3.1110 46 1 5.2349 -6.9555 1.4505 47 1 7.6236 -7.5083 1.4351 48 1 7.4376 -7.5045 3.2419 49 1 8.6846 -5.3307 1.8076 50 1 7.7792 -5.0804 3.3628 51 1 2.7148 -0.1203 1.8124 52 1 1.2326 -1.1174 1.8348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324572304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = -30.192560 kcal Electronic energy + Delta-G solvation = -26931.366764 eV Core-core repulsion = 23249.848129 eV Total energy + Delta-G solvation = -3681.518635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.36985 -39.37116 -38.25845 -35.33647 -33.28027 -32.43668 -31.42812 -29.84739 -28.54672 -27.74379 -26.01965 -25.51510 -25.29771 -23.36775 -22.04545 -21.11259 -20.76886 -19.74371 -19.29665 -17.86123 -16.63985 -16.25550 -16.07040 -15.73534 -15.58358 -15.08386 -14.89944 -14.81377 -14.52752 -14.04970 -13.90977 -13.54752 -13.22433 -13.15397 -12.89885 -12.85227 -12.80231 -12.52705 -12.50823 -12.11980 -11.92851 -11.84786 -11.61043 -11.44456 -11.30748 -11.07354 -11.05363 -11.02395 -10.97650 -10.91273 -10.76831 -10.76381 -10.48253 -10.32587 -9.82146 -9.24420 -9.07774 -8.87506 -8.67726 -8.24387 -6.50455 -6.22629 -3.92955 3.00641 3.09458 3.21363 3.26743 3.30547 3.60053 3.82708 4.19242 4.19816 4.23914 4.29266 4.36282 4.46948 4.56334 4.73160 4.80154 4.90436 5.04089 5.09963 5.12578 5.13196 5.19706 5.23152 5.29861 5.31787 5.34433 5.38479 5.42997 5.45029 5.50908 5.56408 5.60600 5.62097 5.66134 5.75341 5.83029 5.85067 5.87948 5.89402 5.96099 6.00799 6.04614 6.13006 6.14018 6.19613 6.41695 6.51271 6.77622 6.84683 7.58624 7.72884 8.34222 8.63489 9.22802 10.84768 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.001758 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.670100 B =15923.354233 C =16859.738922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 N -0.732 5.732 4 C 0.534 3.466 5 O -0.511 6.511 6 C -0.155 4.155 7 S -0.058 6.058 8 C -0.537 4.537 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.124 4.124 17 C 0.034 3.966 18 N -0.514 5.514 19 C 0.045 3.955 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.140 4.140 26 C 0.037 3.963 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.395 0.605 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.049 0.951 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.644 -24.783 15.716 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 N -0.387 5.387 4 C 0.321 3.679 5 O -0.385 6.385 6 C -0.305 4.305 7 S 0.169 5.831 8 C -0.685 4.685 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.163 4.163 17 C -0.093 4.093 18 N -0.238 5.238 19 C -0.083 4.083 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.174 4.174 24 C -0.182 4.182 25 C -0.177 4.177 26 C -0.091 4.091 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.068 0.932 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.044 -25.821 14.036 30.222 hybrid contribution 2.234 2.470 1.684 3.732 sum 9.279 -23.351 15.719 29.639 Atomic orbital electron populations 1.22180 0.93310 1.02337 1.03675 1.21021 0.94773 0.81367 0.94686 1.46280 1.54014 1.11766 1.26648 1.20239 0.79957 0.86593 0.81158 1.90669 1.35712 1.76779 1.35303 1.23553 1.04158 0.95256 1.07566 1.85367 1.66183 1.08708 1.22863 1.22874 1.36190 0.97516 1.11897 0.90996 1.24986 0.95093 0.98992 0.94466 1.70014 1.35962 1.33617 1.10664 0.86178 0.79044 0.81843 0.78494 1.20281 1.20720 1.19721 1.22880 0.97170 0.98793 0.97472 1.23295 0.96958 0.98969 0.90118 1.64866 1.20873 1.35551 1.02535 1.22325 0.91604 0.97212 0.97142 1.21511 0.96885 0.97164 0.99383 1.21542 0.96980 0.96825 0.99314 1.22546 0.96085 0.94368 0.99799 1.23001 0.96265 0.97028 1.01151 1.22846 0.97014 0.96485 1.01887 1.22950 0.97653 0.96464 1.00649 1.23199 0.98433 0.91384 0.96084 0.89781 0.91718 0.92780 0.77128 0.89373 0.89470 0.92179 0.89962 0.89587 0.89962 0.93708 0.94701 0.90948 0.91062 0.92013 0.92034 0.91906 0.89342 0.90170 0.91598 0.90360 0.91660 0.91681 0.90207 0.93232 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.14 37.16 0.30 -1.68 16 2 C 0.17 2.03 0.94 -130.46 -0.12 1.90 16 3 N -0.73 -9.73 5.15 -46.35 -0.24 -9.97 16 4 C 0.53 9.66 7.03 -10.98 -0.08 9.58 16 5 O -0.51 -10.96 12.73 5.55 0.07 -10.89 16 6 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 7 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 8 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 9 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 10 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 11 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 12 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C -0.12 -1.57 5.83 -24.87 -0.14 -1.72 16 17 C 0.03 0.36 5.80 -1.90 -0.01 0.35 16 18 N -0.51 -4.94 5.26 -230.26 -1.21 -6.16 16 19 C 0.05 0.36 4.70 -3.83 -0.02 0.35 16 20 C -0.11 -0.80 5.27 -26.74 -0.14 -0.94 16 21 C -0.11 -0.67 5.04 -26.73 -0.13 -0.81 16 22 C -0.11 -0.66 3.64 -89.81 -0.33 -0.99 16 23 C -0.14 -0.79 7.65 -25.83 -0.20 -0.99 16 24 C -0.14 -0.79 8.09 -25.83 -0.21 -1.00 16 25 C -0.14 -0.79 7.64 -25.92 -0.20 -0.99 16 26 C 0.04 0.36 6.16 -2.63 -0.02 0.34 16 27 H 0.08 1.34 6.18 -51.93 -0.32 1.02 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.39 4.23 8.09 -40.82 -0.33 3.90 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.02 7.86 -51.93 -0.41 0.62 16 35 H 0.09 1.33 6.67 -51.92 -0.35 0.98 16 36 H 0.08 0.80 7.76 -51.93 -0.40 0.40 16 37 H 0.04 0.49 7.86 -51.93 -0.41 0.08 16 38 H 0.03 0.29 7.90 -51.93 -0.41 -0.12 16 39 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.48 7.25 -51.93 -0.38 0.10 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 51 H 0.05 0.43 7.10 -51.93 -0.37 0.06 16 52 H 0.09 0.82 7.68 -51.93 -0.40 0.42 16 LS Contribution 416.91 15.07 6.28 6.28 Total: -1.00 -32.31 416.91 -12.10 -44.41 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -9.63 Total: 1.50 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.87 Total: -12.42 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.72 Total: -41.49 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.31 -12.10 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324572304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.214 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds