Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 110.27316 * 2 1 4 4 C 1.34777 * 119.99828 * 300.42128 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 S 1.81000 * 109.47389 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99715 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00516 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99710 * 179.97438 * 8 7 6 11 11 N 1.31634 * 120.00163 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46850 * 90.00589 * 12 10 8 14 14 H 1.48498 * 109.47329 * 210.00016 * 12 10 8 15 15 H 1.48499 * 109.47220 * 330.01003 * 12 10 8 16 16 C 1.54593 * 110.30883 * 237.90595 * 2 1 3 17 17 C 1.54934 * 102.92607 * 219.02796 * 16 2 1 18 18 N 1.48538 * 103.22587 * 37.41407 * 17 16 2 19 19 C 1.46898 * 111.00081 * 200.28003 * 18 17 16 20 20 C 1.52990 * 109.47291 * 290.12696 * 19 18 17 21 21 C 1.52998 * 109.47168 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47294 * 179.97438 * 21 20 19 23 23 C 1.53777 * 113.61625 * 274.14071 * 22 21 20 24 24 C 1.53955 * 87.02132 * 220.04503 * 23 22 21 25 25 C 1.53773 * 113.61778 * 176.53203 * 22 21 20 26 26 C 1.48120 * 105.86366 * 320.83295 * 18 17 16 27 27 H 1.09000 * 109.47527 * 59.30250 * 1 2 3 28 28 H 1.08999 * 109.47308 * 179.30016 * 1 2 3 29 29 H 1.09002 * 109.47419 * 299.30262 * 1 2 3 30 30 H 0.97001 * 120.00384 * 120.70574 * 3 2 1 31 31 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 32 32 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 33 33 H 0.96991 * 119.99795 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.72584 * 337.38978 * 16 2 1 35 35 H 1.09009 * 110.72335 * 100.66756 * 16 2 1 36 36 H 1.08993 * 110.67145 * 155.84990 * 17 16 2 37 37 H 1.09003 * 110.66466 * 278.81684 * 17 16 2 38 38 H 1.09004 * 109.46977 * 50.12758 * 19 18 17 39 39 H 1.08999 * 109.46929 * 170.12631 * 19 18 17 40 40 H 1.09001 * 109.47644 * 300.00057 * 20 19 18 41 41 H 1.08999 * 109.47187 * 60.00094 * 20 19 18 42 42 H 1.08997 * 109.47451 * 300.00025 * 21 20 19 43 43 H 1.09004 * 109.47047 * 60.00475 * 21 20 19 44 44 H 1.09005 * 112.84922 * 45.33392 * 22 21 20 45 45 H 1.09003 * 113.61500 * 334.56055 * 23 22 21 46 46 H 1.08998 * 113.62107 * 105.46493 * 23 22 21 47 47 H 1.08995 * 113.53605 * 270.81013 * 24 23 22 48 48 H 1.09008 * 113.74157 * 139.93863 * 24 23 22 49 49 H 1.09002 * 113.61311 * 254.53320 * 25 22 21 50 50 H 1.08999 * 113.61639 * 25.42924 * 25 22 21 51 51 H 1.09002 * 109.94473 * 265.94726 * 26 18 17 52 52 H 1.09007 * 109.99908 * 144.58640 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7167 2.2111 -1.0065 5 8 1.0035 1.8281 -1.9096 6 6 2.2439 3.6229 -1.0098 7 16 1.6405 4.4889 -2.4802 8 6 2.3863 6.0661 -2.2339 9 1 3.0017 6.2427 -1.3641 10 6 2.1838 7.0815 -3.1583 11 7 1.4343 6.8663 -4.2188 12 14 2.9740 8.7539 -2.8969 13 1 4.3128 8.7746 -3.5392 14 1 2.1183 9.8057 -3.5024 15 1 3.1191 9.0107 -1.4415 16 6 2.0666 -0.7703 -1.2283 17 6 3.2870 -1.5323 -0.6535 18 7 2.8345 -1.9221 0.7066 19 6 3.9795 -2.2234 1.5761 20 6 4.6404 -3.5244 1.1166 21 6 5.8333 -3.8379 2.0219 22 6 6.4939 -5.1394 1.5628 23 6 5.8494 -6.4014 2.1600 24 6 7.2757 -6.9609 2.3111 25 6 7.7593 -5.5018 2.3578 26 6 2.0645 -0.7672 1.2236 27 1 -0.3634 0.5246 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3634 0.5030 0.8962 30 1 2.6080 1.6806 0.7222 31 1 1.8986 4.1418 -0.1156 32 1 3.3337 3.6037 -1.0206 33 1 1.2925 7.5760 -4.8646 34 1 1.3178 -1.4681 -1.6032 35 1 2.3774 -0.0789 -2.0116 36 1 3.5068 -2.4152 -1.2535 37 1 4.1578 -0.8788 -0.5994 38 1 4.7023 -1.4093 1.5203 39 1 3.6355 -2.3340 2.6045 40 1 3.9178 -4.3385 1.1724 41 1 4.9844 -3.4138 0.0883 42 1 6.5559 -3.0238 1.9657 43 1 5.4897 -3.9485 3.0504 44 1 6.6284 -5.1875 0.4822 45 1 5.3461 -6.2264 3.1110 46 1 5.2349 -6.9555 1.4505 47 1 7.6236 -7.5083 1.4351 48 1 7.4376 -7.5045 3.2419 49 1 8.6846 -5.3307 1.8076 50 1 7.7792 -5.0804 3.3628 51 1 2.7148 -0.1203 1.8124 52 1 1.2326 -1.1174 1.8348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324572304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -50.099916 kcal Electronic energy + Delta-G solvation = -26932.230012 eV Core-core repulsion = 23249.848129 eV Total energy + Delta-G solvation = -3682.381883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48039 -39.90483 -39.34858 -36.27284 -34.59496 -34.21062 -32.49501 -30.79304 -29.95710 -28.43354 -27.66453 -26.47947 -26.11491 -24.05317 -22.90604 -22.02191 -21.59247 -20.50415 -20.18444 -19.81798 -17.88877 -17.41439 -16.88825 -16.87074 -16.49619 -16.34017 -16.16820 -16.01299 -15.57872 -15.18227 -14.88062 -14.59058 -14.49750 -14.32212 -14.09974 -13.78062 -13.49174 -13.39934 -13.26828 -13.17071 -13.13662 -12.92324 -12.89813 -12.60685 -12.51209 -12.39390 -12.21001 -12.01380 -11.95297 -11.86367 -11.72998 -11.45831 -11.35622 -11.15135 -10.94863 -10.83395 -10.69347 -10.27906 -10.09620 -9.44112 -8.66464 -8.35575 -6.13148 1.26226 1.41241 1.46132 1.56499 1.64470 2.22902 2.27979 2.98177 2.98536 3.31266 3.40197 3.67421 3.73874 3.80806 3.86191 3.92036 3.97654 4.03316 4.15835 4.25669 4.27102 4.30077 4.34513 4.47913 4.50373 4.51051 4.67332 4.73841 4.77365 4.80142 4.81767 4.85277 4.87574 4.91729 4.96339 4.98917 5.05385 5.06589 5.11639 5.14381 5.15891 5.32769 5.34329 5.40720 5.44501 5.51240 5.54884 5.68903 5.87649 6.06246 6.18707 6.53320 7.05830 7.28289 8.73539 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.001758 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.670100 B =15923.354233 C =16859.738922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 N -0.708 5.708 4 C 0.537 3.463 5 O -0.550 6.550 6 C -0.131 4.131 7 S -0.145 6.145 8 C -0.549 4.549 9 H 0.081 0.919 10 C 0.014 3.986 11 N -0.910 5.910 12 Si 0.997 3.003 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.259 1.259 16 C -0.126 4.126 17 C 0.043 3.957 18 N -0.517 5.517 19 C 0.046 3.954 20 C -0.105 4.105 21 C -0.102 4.102 22 C -0.112 4.112 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.140 4.140 26 C 0.045 3.955 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.411 0.589 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.145 -25.147 18.539 32.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 N -0.363 5.363 4 C 0.323 3.677 5 O -0.427 6.427 6 C -0.283 4.283 7 S 0.082 5.918 8 C -0.696 4.696 9 H 0.099 0.901 10 C -0.190 4.190 11 N -0.547 5.547 12 Si 0.819 3.181 13 H -0.193 1.193 14 H -0.202 1.202 15 H -0.183 1.183 16 C -0.165 4.165 17 C -0.084 4.084 18 N -0.241 5.241 19 C -0.082 4.082 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.131 4.131 23 C -0.175 4.175 24 C -0.183 4.183 25 C -0.177 4.177 26 C -0.083 4.083 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.248 0.752 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.102 0.898 51 H 0.084 0.916 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.570 -26.214 16.909 32.350 hybrid contribution 1.761 2.450 0.851 3.135 sum 10.330 -23.764 17.760 31.414 Atomic orbital electron populations 1.22125 0.93685 1.02986 1.02319 1.21188 0.94562 0.80458 0.95927 1.46043 1.53076 1.11735 1.25485 1.19941 0.79702 0.86349 0.81747 1.90672 1.37622 1.77269 1.37132 1.23394 1.04900 0.95779 1.04178 1.85531 1.67669 1.10384 1.28243 1.23215 1.36253 0.97833 1.12347 0.90074 1.26109 0.95477 1.03537 0.93922 1.70178 1.37580 1.35127 1.11810 0.84972 0.78028 0.75999 0.79096 1.19326 1.20235 1.18252 1.22808 0.98225 0.98447 0.96989 1.23184 0.95622 0.98808 0.90813 1.64904 1.21630 1.35346 1.02232 1.22381 0.91026 0.97415 0.97345 1.21440 0.97041 0.96686 0.99152 1.21483 0.96471 0.96747 0.99339 1.22545 0.96447 0.94507 0.99558 1.23009 0.96407 0.96863 1.01189 1.22863 0.96762 0.96470 1.02183 1.22962 0.97416 0.96586 1.00756 1.23171 0.99173 0.91263 0.94711 0.93502 0.90052 0.91709 0.75162 0.87560 0.87727 0.91987 0.90188 0.92844 0.89373 0.93958 0.94630 0.89724 0.91530 0.92816 0.92136 0.91307 0.89919 0.89848 0.91869 0.90293 0.91203 0.91749 0.89815 0.91572 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.14 71.98 0.59 -3.15 16 2 C 0.16 3.74 0.94 4.48 0.00 3.74 16 3 N -0.71 -17.76 5.15 -418.95 -2.16 -19.92 16 4 C 0.54 19.38 7.03 87.66 0.62 19.99 16 5 O -0.55 -24.45 12.73 -3.04 -0.04 -24.49 16 6 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 7 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 8 C -0.55 -31.39 9.50 67.96 0.65 -30.74 16 9 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 10 C 0.01 0.82 5.49 84.86 0.47 1.29 16 11 N -0.91 -55.98 13.22 21.65 0.29 -55.70 16 12 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 C -0.13 -3.16 5.83 31.80 0.19 -2.97 16 17 C 0.04 0.85 5.80 86.65 0.50 1.35 16 18 N -0.52 -8.64 5.26 -882.42 -4.65 -13.28 16 19 C 0.05 0.61 4.70 86.30 0.41 1.01 16 20 C -0.11 -1.30 5.27 30.59 0.16 -1.14 16 21 C -0.10 -1.06 5.04 30.59 0.15 -0.91 16 22 C -0.11 -1.20 3.64 -10.27 -0.04 -1.24 16 23 C -0.14 -1.39 7.65 31.18 0.24 -1.16 16 24 C -0.15 -1.39 8.09 31.18 0.25 -1.14 16 25 C -0.14 -1.39 7.64 31.12 0.24 -1.15 16 26 C 0.04 0.72 6.16 86.40 0.53 1.26 16 27 H 0.05 1.52 6.18 -2.39 -0.01 1.51 16 28 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.41 7.64 8.09 -92.71 -0.75 6.89 16 31 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 32 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 34 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 35 H 0.05 1.71 6.67 -2.38 -0.02 1.69 16 36 H 0.09 1.63 7.76 -2.39 -0.02 1.61 16 37 H 0.04 0.85 7.86 -2.39 -0.02 0.84 16 38 H 0.04 0.48 7.90 -2.38 -0.02 0.46 16 39 H 0.08 0.95 8.11 -2.39 -0.02 0.93 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.75 7.25 -2.39 -0.02 0.74 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.65 7.87 -2.38 -0.02 0.63 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.08 0.79 7.92 -2.39 -0.02 0.77 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 51 H 0.07 0.88 7.10 -2.39 -0.02 0.86 16 52 H 0.11 1.48 7.68 -2.38 -0.02 1.46 16 Total: -1.00 -72.28 416.91 -0.17 -72.45 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.13 Total: 24.20 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 5.39 Total: -19.70 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -6.52 Total: -88.90 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -72.28 -0.17 -72.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324572304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds