Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 110.28822 * 2 1 4 4 C 1.34777 * 119.99525 * 60.67418 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 S 1.80997 * 109.47151 * 180.27780 * 6 4 3 8 8 C 1.76196 * 100.00314 * 179.97438 * 7 6 4 9 9 H 1.08005 * 120.00018 * 0.02562 * 8 7 6 10 10 C 1.38799 * 120.00626 * 179.97438 * 8 7 6 11 11 N 1.31633 * 119.99674 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00584 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46793 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47282 * 119.99523 * 12 10 8 15 15 H 1.48500 * 109.47237 * 240.00020 * 12 10 8 16 16 C 1.54264 * 110.32524 * 122.13311 * 2 1 3 17 17 C 1.54375 * 105.06051 * 118.99623 * 16 2 1 18 18 N 1.48560 * 104.59761 * 23.85010 * 17 16 2 19 19 C 1.46899 * 111.00380 * 200.95563 * 18 17 16 20 20 C 1.52999 * 109.47230 * 290.12842 * 19 18 17 21 21 C 1.52999 * 109.46853 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46853 * 179.97438 * 21 20 19 23 23 C 1.53781 * 113.61597 * 272.49426 * 22 21 20 24 24 C 1.53775 * 87.08672 * 220.01995 * 23 22 21 25 25 C 1.53783 * 113.61224 * 174.99998 * 22 21 20 26 26 C 1.48559 * 104.22323 * 320.51869 * 18 17 16 27 27 H 1.08988 * 109.47569 * 60.69984 * 1 2 3 28 28 H 1.09003 * 109.47062 * 180.70040 * 1 2 3 29 29 H 1.09001 * 109.46603 * 300.69432 * 1 2 3 30 30 H 0.97000 * 120.00580 * 240.68164 * 3 2 1 31 31 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 32 32 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 33 33 H 0.97003 * 120.00297 * 179.97438 * 11 10 8 34 34 H 1.08996 * 110.31765 * 237.89387 * 16 2 1 35 35 H 1.08995 * 110.32451 * 359.97438 * 16 2 1 36 36 H 1.09004 * 110.41090 * 142.63019 * 17 16 2 37 37 H 1.08999 * 110.41156 * 265.07120 * 17 16 2 38 38 H 1.08997 * 109.46621 * 50.12870 * 19 18 17 39 39 H 1.09000 * 109.47038 * 170.12708 * 19 18 17 40 40 H 1.08993 * 109.46866 * 299.99468 * 20 19 18 41 41 H 1.09000 * 109.47219 * 59.99978 * 20 19 18 42 42 H 1.09003 * 109.47505 * 300.00074 * 21 20 19 43 43 H 1.09002 * 109.47437 * 60.00003 * 21 20 19 44 44 H 1.09000 * 112.84888 * 43.80590 * 22 21 20 45 45 H 1.08996 * 113.61503 * 334.57667 * 23 22 21 46 46 H 1.09005 * 113.61184 * 105.47071 * 23 22 21 47 47 H 1.09002 * 113.61686 * 270.88932 * 24 23 22 48 48 H 1.08996 * 113.61653 * 139.97825 * 24 23 22 49 49 H 1.08999 * 113.61440 * 254.52803 * 25 22 21 50 50 H 1.09003 * 113.61750 * 25.34765 * 25 22 21 51 51 H 1.09002 * 110.40998 * 280.70609 * 26 18 17 52 52 H 1.08998 * 110.41539 * 158.26109 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7354 2.2043 1.0177 5 8 1.0430 1.8137 1.9336 6 6 2.2630 3.6159 1.0208 7 16 1.6937 4.4695 2.5118 8 6 2.4354 6.0482 2.2627 9 1 3.0306 6.2321 1.3804 10 6 2.2541 7.0560 3.1998 11 7 1.5274 6.8324 4.2744 12 14 3.0398 8.7299 2.9353 13 1 3.7999 8.7239 1.6596 14 1 1.9814 9.7699 2.8765 15 1 3.9633 9.0265 4.0598 16 6 2.0659 -0.7694 1.2250 17 6 2.8828 -1.9401 0.6375 18 7 3.2720 -1.4807 -0.7206 19 6 3.6119 -2.6192 -1.5844 20 6 4.9265 -3.2433 -1.1119 21 6 5.2801 -4.4295 -2.0111 22 6 6.5950 -5.0532 -1.5390 23 6 7.8430 -4.4021 -2.1581 24 6 8.4294 -5.8191 -2.2723 25 6 6.9796 -6.3314 -2.3026 26 6 2.0684 -0.7706 -1.2247 27 1 -0.3634 0.5029 -0.8961 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3632 0.5246 0.8837 30 1 2.5920 1.6865 -0.7324 31 1 3.3529 3.5966 1.0069 32 1 1.8978 4.1423 0.1390 33 1 1.4009 7.5365 4.9295 34 1 2.7068 -0.1246 1.8263 35 1 1.2389 -1.1467 1.8265 36 1 3.7690 -2.1274 1.2439 37 1 2.2683 -2.8381 0.5734 38 1 2.8174 -3.3636 -1.5336 39 1 3.7221 -2.2750 -2.6127 40 1 5.7210 -2.4989 -1.1627 41 1 4.8163 -3.5876 -0.0835 42 1 4.4854 -5.1739 -1.9600 43 1 5.3902 -4.0857 -3.0396 44 1 6.6481 -5.1592 -0.4555 45 1 7.6557 -3.9280 -3.1216 46 1 8.3878 -3.7584 -1.4674 47 1 8.9854 -6.1340 -1.3893 48 1 8.9734 -5.9930 -3.2006 49 1 6.8275 -7.2455 -1.7286 50 1 6.5551 -6.3857 -3.3051 51 1 1.3263 -1.4856 -1.5801 52 1 2.3412 -0.0773 -2.0202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324572305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -30.440641 kcal Electronic energy + Delta-G solvation = -26916.995451 eV Core-core repulsion = 23235.466058 eV Total energy + Delta-G solvation = -3681.529393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30445 -39.37117 -38.24608 -35.33419 -33.26433 -32.40261 -31.42148 -29.79838 -28.44616 -27.82449 -26.01319 -25.48699 -25.29713 -23.39372 -21.93908 -21.09612 -20.82243 -19.73786 -19.20965 -17.80463 -16.63814 -16.28259 -16.06643 -15.79937 -15.32228 -15.07740 -14.91813 -14.78363 -14.70102 -14.10375 -13.86134 -13.28373 -13.16048 -13.07126 -12.94301 -12.88689 -12.82902 -12.57265 -12.52585 -12.03132 -11.89858 -11.89348 -11.72779 -11.47232 -11.29598 -11.05935 -11.02736 -11.00754 -10.97241 -10.89844 -10.74078 -10.71177 -10.47454 -10.32971 -9.77229 -9.18053 -9.05211 -8.84713 -8.67657 -8.19379 -6.46202 -6.19484 -3.89128 3.08270 3.17421 3.23196 3.30187 3.35490 3.66456 3.77344 4.19068 4.22884 4.24031 4.29691 4.35376 4.47382 4.56825 4.75517 4.83986 4.93901 5.04607 5.08036 5.15803 5.17325 5.19075 5.21608 5.27054 5.32428 5.35089 5.38186 5.44041 5.46145 5.49477 5.51563 5.57279 5.62458 5.62791 5.68909 5.76739 5.82846 5.86496 5.94755 5.96242 6.00049 6.02838 6.14352 6.19893 6.25832 6.33035 6.59408 6.77581 6.85717 7.62537 7.84396 8.38051 8.72108 9.26194 10.87993 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.001812 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.765583 B =15444.876929 C =16631.322016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 N -0.724 5.724 4 C 0.534 3.466 5 O -0.515 6.515 6 C -0.154 4.154 7 S -0.060 6.060 8 C -0.534 4.534 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.868 5.868 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.123 4.123 17 C 0.033 3.967 18 N -0.509 5.509 19 C 0.044 3.956 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.139 4.139 26 C 0.032 3.968 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.057 0.943 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -25.678 -16.064 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.090 3.910 3 N -0.379 5.379 4 C 0.321 3.679 5 O -0.390 6.390 6 C -0.304 4.304 7 S 0.167 5.833 8 C -0.683 4.683 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.162 4.162 17 C -0.095 4.095 18 N -0.232 5.232 19 C -0.084 4.084 20 C -0.150 4.150 21 C -0.146 4.146 22 C -0.128 4.128 23 C -0.175 4.175 24 C -0.182 4.182 25 C -0.177 4.177 26 C -0.096 4.096 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.232 0.768 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.075 0.925 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.712 -25.920 -14.368 30.386 hybrid contribution 0.910 1.130 -1.650 2.197 sum 7.622 -24.791 -16.018 30.483 Atomic orbital electron populations 1.22223 0.93756 1.01958 1.03939 1.20862 0.93692 0.82057 0.94381 1.46119 1.54818 1.11468 1.25446 1.20225 0.79717 0.86662 0.81331 1.90662 1.36832 1.76559 1.34930 1.23540 1.04212 0.95244 1.07428 1.85347 1.67793 1.09159 1.21041 1.22922 1.37157 0.97648 1.10524 0.90921 1.24987 0.95143 0.98992 0.94485 1.70031 1.36952 1.33648 1.09716 0.86127 0.78923 0.82196 0.78314 1.19623 1.20591 1.20588 1.22699 0.99882 0.96383 0.97232 1.23181 0.99054 0.96619 0.90647 1.65400 1.32609 1.22840 1.02370 1.22307 0.97037 0.91707 0.97337 1.21523 0.97031 0.97176 0.99313 1.21539 0.96602 0.97097 0.99348 1.22553 0.94359 0.96088 0.99831 1.22978 0.97015 0.96335 1.01167 1.22818 0.96450 0.97032 1.01938 1.22955 0.96534 0.97473 1.00723 1.23375 0.91708 0.97620 0.96898 0.92578 0.92288 0.89626 0.76752 0.89330 0.89422 0.92285 0.90006 0.90443 0.90016 0.93889 0.94761 0.90881 0.90978 0.92033 0.92117 0.91890 0.89329 0.90141 0.91541 0.90323 0.91654 0.91741 0.90232 0.92493 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.18 37.16 0.30 -1.66 16 2 C 0.18 2.14 1.01 -130.43 -0.13 2.01 16 3 N -0.72 -9.95 5.10 -46.32 -0.24 -10.19 16 4 C 0.53 9.87 7.01 -10.98 -0.08 9.79 16 5 O -0.52 -11.21 13.14 5.55 0.07 -11.14 16 6 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 7 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 8 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 9 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 10 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 11 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 12 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.12 -1.56 5.49 -25.35 -0.14 -1.70 16 17 C 0.03 0.33 5.74 -2.18 -0.01 0.32 16 18 N -0.51 -4.94 5.37 -229.97 -1.24 -6.17 16 19 C 0.04 0.34 4.81 -3.82 -0.02 0.33 16 20 C -0.11 -0.81 5.26 -26.73 -0.14 -0.95 16 21 C -0.11 -0.65 5.05 -26.73 -0.14 -0.78 16 22 C -0.11 -0.67 3.65 -89.81 -0.33 -1.00 16 23 C -0.14 -0.84 7.63 -25.92 -0.20 -1.04 16 24 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 25 C -0.14 -0.78 7.64 -25.91 -0.20 -0.98 16 26 C 0.03 0.31 5.69 -2.18 -0.01 0.29 16 27 H 0.06 0.64 8.14 -51.94 -0.42 0.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.34 6.27 -51.93 -0.33 1.01 16 30 H 0.40 4.55 8.27 -40.82 -0.34 4.22 16 31 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.27 7.31 -51.93 -0.38 0.89 16 35 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 36 H 0.08 0.83 7.76 -51.93 -0.40 0.42 16 37 H 0.04 0.39 7.82 -51.93 -0.41 -0.01 16 38 H 0.03 0.26 7.88 -51.93 -0.41 -0.15 16 39 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.47 7.26 -51.93 -0.38 0.10 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.37 7.84 -51.93 -0.41 -0.04 16 44 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 45 H 0.08 0.48 7.89 -51.93 -0.41 0.07 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 51 H 0.06 0.48 7.72 -51.93 -0.40 0.08 16 52 H 0.09 0.75 7.75 -51.93 -0.40 0.34 16 LS Contribution 418.04 15.07 6.30 6.30 Total: -1.00 -32.78 418.04 -12.17 -44.95 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.70 Total: 1.45 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.88 Total: -12.35 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.74 Total: -41.93 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.78 -12.17 -44.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324572305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.514 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds