Wall clock time and date at job start Sat Apr 11 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53785 * 113.69093 * 2 1 4 4 C 1.53779 * 87.08093 * 139.99088 * 3 2 1 5 5 C 1.52998 * 113.68908 * 220.00507 * 4 3 2 6 6 N 1.46899 * 109.47269 * 272.53580 * 5 4 3 7 7 C 1.46893 * 111.00074 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47479 * 180.02562 * 7 6 5 9 9 C 1.53005 * 110.28799 * 299.32024 * 8 7 6 10 10 C 1.54608 * 110.32848 * 177.07530 * 8 7 6 11 11 C 1.54947 * 102.84030 * 219.25855 * 10 8 7 12 12 N 1.48120 * 103.25008 * 37.37583 * 11 10 8 13 13 C 1.34773 * 127.03103 * 140.74600 * 12 11 10 14 14 O 1.21278 * 120.00261 * 179.97438 * 13 12 11 15 15 C 1.50708 * 120.00034 * 359.95759 * 13 12 11 16 16 S 1.80998 * 109.47161 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99839 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99706 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00272 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99334 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47318 * 60.00278 * 21 19 17 23 23 H 1.48502 * 109.46825 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47162 * 299.99768 * 21 19 17 25 25 C 1.47482 * 105.93652 * 320.71117 * 12 11 10 26 26 C 1.53781 * 113.61293 * 97.53625 * 2 1 3 27 27 H 1.09005 * 109.47494 * 320.93816 * 1 2 3 28 28 H 1.09002 * 109.47422 * 80.93625 * 1 2 3 29 29 H 1.09000 * 109.47785 * 200.93739 * 1 2 3 30 30 H 1.09002 * 112.85043 * 228.72884 * 2 1 3 31 31 H 1.09003 * 113.60734 * 254.54208 * 3 2 1 32 32 H 1.08996 * 113.61146 * 25.43706 * 3 2 1 33 33 H 1.09003 * 113.61186 * 89.11185 * 4 3 2 34 34 H 1.09002 * 109.47010 * 32.54063 * 5 4 3 35 35 H 1.09006 * 109.47124 * 152.53503 * 5 4 3 36 36 H 1.00903 * 110.99707 * 56.04495 * 6 5 4 37 37 H 1.08999 * 109.47749 * 300.00125 * 7 6 5 38 38 H 1.09003 * 109.47484 * 59.99837 * 7 6 5 39 39 H 1.09004 * 109.46949 * 59.29666 * 9 8 7 40 40 H 1.08996 * 109.46734 * 179.29493 * 9 8 7 41 41 H 1.08997 * 109.47156 * 299.29923 * 9 8 7 42 42 H 1.09001 * 110.74781 * 337.59613 * 10 8 7 43 43 H 1.09006 * 110.74279 * 100.92473 * 10 8 7 44 44 H 1.08997 * 110.66053 * 278.93796 * 11 10 8 45 45 H 1.08992 * 110.66399 * 155.82223 * 11 10 8 46 46 H 1.08996 * 109.46750 * 300.00153 * 15 13 12 47 47 H 1.09004 * 109.46986 * 60.00155 * 15 13 12 48 48 H 0.97000 * 119.99593 * 179.97438 * 20 19 17 49 49 H 1.09006 * 109.91011 * 266.08790 * 25 12 11 50 50 H 1.08997 * 110.07459 * 144.89511 * 25 12 11 51 51 H 1.09005 * 113.61302 * 334.47929 * 26 2 1 52 52 H 1.08996 * 113.61527 * 105.30092 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1479 1.4082 0.0000 4 6 3.1936 0.8639 0.9874 5 6 3.5503 1.8436 2.1071 6 7 4.6379 2.7238 1.6595 7 6 5.0083 3.6797 2.7116 8 6 6.1408 4.5776 2.2093 9 6 7.3708 3.7362 1.8627 10 6 6.4968 5.6398 3.2748 11 6 6.7574 6.9078 2.4233 12 7 5.7427 6.8096 1.3488 13 6 5.0243 7.8180 0.8162 14 8 4.2224 7.5917 -0.0651 15 6 5.2172 9.2266 1.3160 16 16 4.1175 10.3437 0.4113 17 6 4.5404 11.8743 1.1749 18 1 5.2864 11.9004 1.9554 19 6 3.9141 13.0463 0.7739 20 7 3.0046 13.0144 -0.1770 21 14 4.3620 14.6688 1.5841 22 1 5.8062 14.9443 1.3752 23 1 3.5578 15.7618 0.9808 24 1 4.0784 14.5902 3.0396 25 6 5.6798 5.3830 0.9803 26 6 2.1459 -0.1848 1.3969 27 1 -0.3634 0.7980 0.6476 28 1 -0.3634 0.1619 -1.0148 29 1 -0.3635 -0.9598 0.3672 30 1 1.9532 -0.6626 -0.7550 31 1 2.5670 1.7010 -0.9627 32 1 1.4974 2.1704 0.4290 33 1 4.0717 0.4374 0.5023 34 1 2.6758 2.4445 2.3564 35 1 3.8720 1.2875 2.9877 36 1 4.3881 3.2025 0.8071 37 1 4.1440 4.2935 2.9655 38 1 5.3402 3.1361 3.5961 39 1 7.1095 3.0108 1.0922 40 1 8.1642 4.3869 1.4950 41 1 7.7150 3.2115 2.7539 42 1 5.6613 5.7979 3.9567 43 1 7.3941 5.3516 3.8225 44 1 7.7637 6.8899 2.0048 45 1 6.6028 7.8085 3.0173 46 1 4.9834 9.2698 2.3797 47 1 6.2525 9.5293 1.1590 48 1 2.5666 13.8334 -0.4569 49 1 6.3437 5.1875 0.1380 50 1 4.6578 5.1088 0.7187 51 1 1.4950 0.1420 2.2078 52 1 2.5623 -1.1784 1.5625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324691918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:45 Heat of formation + Delta-G solvation = -49.639040 kcal Electronic energy + Delta-G solvation = -27255.364410 eV Core-core repulsion = 23573.002512 eV Total energy + Delta-G solvation = -3682.361898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31239 -40.25256 -39.22735 -36.53127 -34.60737 -33.98558 -31.29835 -30.97373 -30.20025 -27.78946 -27.72790 -26.81162 -26.59033 -25.37233 -23.52340 -21.85478 -20.78560 -20.35026 -19.96160 -19.50451 -18.16843 -17.35580 -16.90187 -16.83904 -16.59998 -16.40949 -15.88951 -15.65647 -15.52980 -15.38931 -14.73642 -14.67481 -14.49654 -14.39358 -13.96804 -13.65590 -13.54965 -13.47135 -13.33073 -13.31441 -13.19424 -13.11448 -12.88169 -12.82198 -12.64515 -12.62260 -12.36714 -11.88854 -11.84275 -11.67374 -11.59014 -11.51907 -11.42774 -11.14582 -10.99953 -10.98408 -10.83109 -10.31349 -9.78323 -9.39517 -8.70862 -8.36203 -6.15604 1.21512 1.43128 1.43318 1.52929 1.53907 2.06748 2.25730 2.97732 3.07585 3.22045 3.47071 3.60897 3.65810 3.75191 3.80774 3.86551 3.88849 3.95699 4.20788 4.24112 4.27101 4.37661 4.40750 4.42972 4.49934 4.58865 4.63282 4.65951 4.73372 4.75401 4.80610 4.83216 4.85786 4.89528 4.91493 4.93488 4.99122 5.06673 5.07502 5.18514 5.25636 5.26974 5.28050 5.33729 5.39400 5.46357 5.58156 5.66296 6.06565 6.17741 6.34442 6.39989 7.04433 7.08302 8.72921 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002129 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.202140 B =13145.983810 C =14708.720720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.144 4.144 4 C -0.102 4.102 5 C 0.071 3.929 6 N -0.686 5.686 7 C 0.076 3.924 8 C -0.060 4.060 9 C -0.120 4.120 10 C -0.117 4.117 11 C 0.090 3.910 12 N -0.621 5.621 13 C 0.547 3.453 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.261 1.261 25 C 0.113 3.887 26 C -0.124 4.124 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.335 0.665 37 H 0.013 0.987 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.272 0.728 49 H 0.069 0.931 50 H 0.050 0.950 51 H 0.079 0.921 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.423 -27.684 9.590 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.181 4.181 4 C -0.121 4.121 5 C -0.058 4.058 6 N -0.316 5.316 7 C -0.053 4.053 8 C -0.062 4.062 9 C -0.177 4.177 10 C -0.155 4.155 11 C -0.031 4.031 12 N -0.355 5.355 13 C 0.335 3.665 14 O -0.449 6.449 15 C -0.269 4.269 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.010 4.010 26 C -0.162 4.162 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.031 0.969 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.098 0.902 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.563 -28.314 8.316 30.231 hybrid contribution -0.235 2.120 0.787 2.274 sum 6.328 -26.194 9.103 28.443 Atomic orbital electron populations 1.21724 0.94787 1.01875 1.01636 1.22456 0.95701 0.96922 0.98192 1.23150 0.98355 0.96967 0.99672 1.22480 0.97077 0.96428 0.96068 1.21942 0.91486 0.94223 0.98119 1.60602 1.41233 1.23320 1.06481 1.21990 0.95332 0.92840 0.95158 1.21465 0.96877 0.94387 0.93426 1.21692 0.94454 0.98964 1.02632 1.22847 1.03766 0.92447 0.96456 1.22902 0.91822 1.00455 0.87954 1.48797 1.40251 1.07062 1.39422 1.19788 0.79451 0.85972 0.81255 1.90680 1.37350 1.84485 1.32410 1.23289 1.05059 0.94111 1.04481 1.85603 1.53019 1.01749 1.52134 1.23154 1.28012 0.93137 1.25107 0.89841 1.26166 0.94160 1.03408 0.95495 1.70181 1.25635 1.29953 1.29012 0.84981 0.78767 0.75563 0.78545 1.18547 1.20365 1.18550 1.22256 1.00887 0.79438 0.98426 1.22971 0.97341 0.99152 0.96751 0.93260 0.92797 0.91742 0.88857 0.92182 0.91413 0.88407 0.96385 0.90191 0.84666 0.96906 0.88976 0.91874 0.92472 0.90888 0.90948 0.86554 0.88833 0.89473 0.87609 0.87527 0.91949 0.91277 0.93172 0.90208 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.70 71.98 0.70 -1.19 16 2 C -0.11 -1.54 4.36 -10.27 -0.04 -1.59 16 3 C -0.14 -2.35 7.19 31.12 0.22 -2.12 16 4 C -0.10 -1.44 3.90 -10.27 -0.04 -1.48 16 5 C 0.07 1.09 5.52 86.30 0.48 1.56 16 6 N -0.69 -11.31 5.81 -513.89 -2.99 -14.29 16 7 C 0.08 1.22 4.43 86.31 0.38 1.60 16 8 C -0.06 -0.95 0.76 -51.29 -0.04 -0.99 16 9 C -0.12 -1.48 8.07 71.98 0.58 -0.90 16 10 C -0.12 -1.60 6.17 31.81 0.20 -1.40 16 11 C 0.09 1.70 6.95 86.73 0.60 2.30 16 12 N -0.62 -17.85 3.29 -809.40 -2.66 -20.51 16 13 C 0.55 21.99 7.91 87.66 0.69 22.68 16 14 O -0.57 -28.35 16.20 -3.02 -0.05 -28.40 16 15 C -0.12 -4.94 5.09 71.24 0.36 -4.58 16 16 S -0.15 -8.69 20.57 -56.49 -1.16 -9.86 16 17 C -0.55 -31.59 9.50 67.95 0.65 -30.94 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.72 5.49 84.86 0.47 1.18 16 20 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 21 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C 0.11 2.70 5.82 86.53 0.50 3.21 16 26 C -0.12 -1.51 7.20 31.12 0.22 -1.29 16 27 H 0.05 0.70 7.98 -2.38 -0.02 0.68 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.02 0.32 7.85 -2.39 -0.02 0.30 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.34 6.47 7.01 -89.69 -0.63 5.84 16 37 H 0.01 0.26 8.13 -2.39 -0.02 0.24 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 1.08 7.86 -2.39 -0.02 1.06 16 43 H 0.12 0.94 7.86 -2.38 -0.02 0.92 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.09 1.61 7.24 -2.39 -0.02 1.60 16 46 H 0.11 4.01 7.91 -2.40 -0.02 3.99 16 47 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 48 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.07 1.63 7.68 -2.38 -0.02 1.61 16 50 H 0.05 1.41 6.42 -2.39 -0.02 1.40 16 51 H 0.08 0.98 8.06 -2.38 -0.02 0.97 16 52 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.71 421.25 1.63 -74.07 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.24 Total: 23.45 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.93 Total: -13.93 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -5.36 Total: -91.13 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -75.71 1.63 -74.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324691918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.435 kcal (2) G-P(sol) polarization free energy of solvation -75.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds