Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99744 * 2 1 4 4 C 1.34776 * 119.99806 * 179.97438 * 2 1 3 5 5 O 1.21578 * 120.00150 * 0.02562 * 4 2 1 6 6 N 1.34774 * 119.99593 * 180.02562 * 4 2 1 7 7 C 1.46499 * 119.99796 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47108 * 179.97438 * 7 6 4 9 9 N 1.46499 * 109.47108 * 179.97438 * 8 7 6 10 10 C 1.46507 * 119.99768 * 270.00331 * 9 8 7 11 11 C 1.34780 * 120.00260 * 89.99740 * 9 8 7 12 12 O 1.21348 * 119.99829 * 3.25177 * 11 9 8 13 13 C 1.49452 * 120.00195 * 183.24491 * 11 9 8 14 14 O 1.21350 * 119.99681 * 353.88675 * 13 11 9 15 15 N 1.34771 * 120.00231 * 173.60943 * 13 11 9 16 16 C 1.46499 * 120.00220 * 185.01737 * 15 13 11 17 17 C 1.53000 * 109.47019 * 184.96668 * 16 15 13 18 18 C 1.50700 * 115.55231 * 305.47144 * 17 16 15 19 19 H 1.08002 * 120.00231 * 149.46650 * 18 17 16 20 20 C 1.37876 * 119.99809 * 329.45879 * 18 17 16 21 21 N 1.31516 * 120.00035 * 4.73435 * 20 18 17 22 22 Si 1.86801 * 120.00306 * 184.72920 * 20 18 17 23 23 H 1.48501 * 109.46811 * 60.00133 * 22 20 18 24 24 H 1.48499 * 109.47340 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46829 * 300.00436 * 22 20 18 26 26 C 1.53000 * 117.49933 * 159.79518 * 17 16 15 27 27 C 1.53000 * 117.49655 * 91.13598 * 17 16 15 28 28 H 1.08995 * 109.47483 * 270.00796 * 1 2 3 29 29 H 1.09005 * 109.46795 * 30.00417 * 1 2 3 30 30 H 1.09003 * 109.47129 * 150.00575 * 1 2 3 31 31 H 1.08999 * 109.46506 * 269.99429 * 3 2 1 32 32 H 1.08995 * 109.47512 * 29.99241 * 3 2 1 33 33 H 1.08999 * 109.47228 * 150.00240 * 3 2 1 34 34 H 0.97002 * 120.00676 * 359.97438 * 6 4 2 35 35 H 1.09001 * 109.47497 * 59.99836 * 7 6 4 36 36 H 1.09002 * 109.47267 * 299.99694 * 7 6 4 37 37 H 1.08997 * 109.47290 * 60.00180 * 8 7 6 38 38 H 1.08999 * 109.47290 * 299.99707 * 8 7 6 39 39 H 1.09002 * 109.46655 * 264.11021 * 10 9 8 40 40 H 1.08996 * 109.47231 * 24.11084 * 10 9 8 41 41 H 1.09000 * 109.46869 * 144.11283 * 10 9 8 42 42 H 0.97002 * 119.99476 * 5.00933 * 15 13 11 43 43 H 1.08997 * 109.46629 * 304.96494 * 16 15 13 44 44 H 1.08996 * 109.46860 * 64.96739 * 16 15 13 45 45 H 0.97000 * 120.00498 * 184.99669 * 21 20 18 46 46 H 1.08998 * 117.49396 * 0.02562 * 26 17 16 47 47 H 1.08997 * 117.50045 * 145.02268 * 26 17 16 48 48 H 1.09005 * 117.49924 * 214.97483 * 27 17 16 49 49 H 1.09002 * 117.50017 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5310 -2.2201 0.0005 6 7 3.4866 -1.1672 0.0010 7 6 4.2191 -2.4359 0.0010 8 6 5.7234 -2.1563 0.0010 9 7 6.4559 -3.4250 0.0017 10 6 6.8220 -4.0588 1.2708 11 6 6.7929 -4.0092 -1.1652 12 8 6.5420 -3.4557 -2.2156 13 6 7.4758 -5.3386 -1.1656 14 8 7.8265 -5.8408 -0.1181 15 7 7.6972 -5.9822 -2.3289 16 6 8.2661 -7.3321 -2.3224 17 6 8.5294 -7.7815 -3.7610 18 6 7.3452 -7.7129 -4.6905 19 1 7.4951 -7.5230 -5.7431 20 6 6.0703 -7.8928 -4.1971 21 7 5.8794 -8.0313 -2.9033 22 14 4.6142 -7.9397 -5.3663 23 1 4.7877 -9.0577 -6.3282 24 1 3.3636 -8.1421 -4.5916 25 1 4.5340 -6.6559 -6.1086 26 6 9.5296 -8.9196 -3.9738 27 6 9.9093 -7.4858 -4.3521 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1385 0.5138 34 1 3.9717 -0.3271 0.0007 35 1 3.9562 -3.0073 -0.8891 36 1 3.9555 -3.0077 0.8908 37 1 5.9867 -1.5848 0.8910 38 1 5.9867 -1.5848 -0.8889 39 1 7.8437 -3.7840 1.5327 40 1 6.1430 -3.7222 2.0542 41 1 6.7516 -5.1418 1.1696 42 1 7.4796 -5.5515 -3.1704 43 1 9.2031 -7.3288 -1.7656 44 1 7.5649 -8.0197 -1.8496 45 1 4.9934 -8.2300 -2.5623 46 1 9.9996 -9.3485 -3.0889 47 1 9.3312 -9.6186 -4.7863 48 1 9.9606 -7.2422 -5.4133 49 1 10.6294 -6.9707 -3.7162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324830960.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = -64.254023 kcal Electronic energy + Delta-G solvation = -30263.815405 eV Core-core repulsion = 26034.526539 eV Total energy + Delta-G solvation = -4229.288866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77233 -41.21625 -39.65836 -38.44811 -37.52568 -36.57906 -35.79962 -34.69089 -34.09833 -31.03380 -28.81395 -28.52327 -27.70859 -27.46632 -26.75733 -24.96289 -23.09966 -22.81809 -21.38579 -21.19035 -20.56203 -19.17174 -18.93111 -18.09582 -17.94421 -17.62307 -17.12073 -17.03239 -16.71884 -16.47098 -16.08590 -15.61077 -15.55623 -15.27585 -15.04715 -14.83546 -14.70764 -14.34476 -14.18049 -14.02927 -13.65379 -13.51295 -13.45727 -13.41069 -13.30797 -13.14593 -12.90986 -12.84429 -12.65701 -12.51508 -12.31629 -12.19790 -12.04395 -11.52256 -11.47679 -10.94026 -10.74463 -10.39196 -10.33726 -10.15282 -9.96166 -9.66728 -9.58058 -7.99780 -6.22186 0.49586 1.23307 1.39537 1.43572 1.48264 1.73273 2.01688 2.30077 2.38353 2.64603 2.98288 3.05219 3.53839 3.69649 3.74565 3.89755 4.22606 4.24801 4.28353 4.32752 4.36190 4.48886 4.51642 4.62982 4.69799 4.73533 4.75995 4.78388 4.82421 4.87407 4.91079 4.97521 5.06020 5.12745 5.23356 5.28596 5.38190 5.44547 5.52330 5.59273 5.73814 5.81735 5.91817 5.93303 6.33628 6.48325 6.75570 6.84815 6.89317 7.21860 7.41266 7.44032 8.84753 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.002816 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.561907 B = 9940.893344 C =11399.201264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.637 5.637 3 C 0.072 3.928 4 C 0.692 3.308 5 O -0.642 6.642 6 N -0.725 5.725 7 C 0.129 3.871 8 C 0.110 3.890 9 N -0.581 5.581 10 C 0.067 3.933 11 C 0.506 3.494 12 O -0.546 6.546 13 C 0.490 3.510 14 O -0.553 6.553 15 N -0.642 5.642 16 C 0.180 3.820 17 C -0.001 4.001 18 C -0.503 4.503 19 H 0.056 0.944 20 C 0.038 3.962 21 N -0.887 5.887 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.277 1.277 26 C -0.191 4.191 27 C -0.191 4.191 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.406 0.594 43 H 0.034 0.966 44 H 0.088 0.912 45 H 0.257 0.743 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 20.783 10.555 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.375 5.375 3 C -0.070 4.070 4 C 0.393 3.607 5 O -0.524 6.524 6 N -0.384 5.384 7 C 0.003 3.997 8 C -0.012 4.012 9 N -0.314 5.314 10 C -0.074 4.074 11 C 0.289 3.711 12 O -0.424 6.424 13 C 0.271 3.729 14 O -0.434 6.434 15 N -0.288 5.288 16 C 0.057 3.943 17 C -0.002 4.002 18 C -0.541 4.541 19 H 0.074 0.926 20 C -0.164 4.164 21 N -0.525 5.525 22 Si 0.768 3.232 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.202 1.202 26 C -0.230 4.230 27 C -0.228 4.228 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.241 0.759 43 H 0.052 0.948 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.339 20.003 10.868 23.008 hybrid contribution -0.906 -0.123 -1.215 1.520 sum -4.245 19.880 9.653 22.504 Atomic orbital electron populations 1.21637 0.77156 1.03299 1.02269 1.47064 1.07770 1.05082 1.77570 1.22052 0.97755 0.84064 1.03147 1.16181 0.82329 0.84229 0.77952 1.90916 1.68918 1.32483 1.60102 1.44764 1.04052 1.09857 1.79685 1.21358 0.91759 0.85564 1.01033 1.21780 0.88159 0.84829 1.06460 1.47605 1.54066 1.23237 1.06477 1.22471 1.01646 1.00474 0.82776 1.20393 0.79951 0.86166 0.84555 1.90715 1.54996 1.64706 1.31948 1.20046 0.81555 0.86496 0.84807 1.90566 1.52978 1.69265 1.30617 1.45512 1.58658 1.16832 1.07816 1.20931 0.95200 0.82370 0.95810 1.19314 0.88744 0.99106 0.93018 1.20711 0.90163 1.49406 0.93807 0.92591 1.25495 1.00511 0.94288 0.96074 1.70045 1.22526 1.47785 1.12105 0.85868 0.79235 0.78642 0.79453 1.19467 1.21888 1.20205 1.22980 1.06363 0.91454 1.02196 1.22975 1.00278 0.98968 1.00587 0.92179 0.87973 0.93322 0.91590 0.88186 0.89934 0.74541 0.95375 0.91614 0.84601 0.89004 0.90862 0.88446 0.89946 0.75941 0.94757 0.89463 0.93351 0.89830 0.90285 0.90082 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.44 127.77 1.33 2.85 16 2 N -0.64 -11.15 3.27 -890.19 -2.91 -14.07 16 3 C 0.07 0.50 10.20 127.77 1.30 1.80 16 4 C 0.69 18.28 8.28 179.06 1.48 19.77 16 5 O -0.64 -24.33 15.92 -3.96 -0.06 -24.39 16 6 N -0.72 -14.68 5.42 -478.54 -2.59 -17.27 16 7 C 0.13 3.26 6.00 86.38 0.52 3.78 16 8 C 0.11 2.21 5.52 86.38 0.48 2.69 16 9 N -0.58 -16.16 2.87 -848.33 -2.44 -18.60 16 10 C 0.07 1.60 9.54 127.77 1.22 2.82 16 11 C 0.51 19.02 7.74 87.27 0.68 19.70 16 12 O -0.55 -22.80 16.05 -3.24 -0.05 -22.85 16 13 C 0.49 20.79 7.77 87.27 0.68 21.47 16 14 O -0.55 -23.68 13.13 -3.25 -0.04 -23.73 16 15 N -0.64 -29.30 4.67 -464.43 -2.17 -31.48 16 16 C 0.18 8.47 4.58 86.38 0.40 8.86 16 17 C 0.00 -0.05 2.13 -52.93 -0.11 -0.17 16 18 C -0.50 -26.04 8.36 25.60 0.21 -25.82 16 19 H 0.06 2.90 7.82 -2.91 -0.02 2.87 16 20 C 0.04 1.99 5.26 84.65 0.45 2.44 16 21 N -0.89 -48.18 9.65 21.45 0.21 -47.98 16 22 Si 0.94 43.58 29.54 68.60 2.03 45.60 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 C -0.19 -7.95 9.96 30.62 0.30 -7.64 16 27 C -0.19 -7.64 9.92 30.62 0.30 -7.33 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.84 8.07 -2.38 -0.02 0.82 16 30 H 0.05 1.04 7.42 -2.39 -0.02 1.02 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.25 8.07 -2.39 -0.02 0.23 16 33 H 0.08 0.31 6.36 -2.39 -0.02 0.30 16 34 H 0.42 4.83 6.20 -92.71 -0.58 4.25 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.14 1.44 8.07 -2.39 -0.02 1.42 16 38 H 0.09 1.94 7.38 -2.39 -0.02 1.92 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.60 8.03 -2.39 -0.02 1.58 16 41 H 0.08 2.57 5.38 -2.41 -0.01 2.55 16 42 H 0.41 19.33 7.43 -92.71 -0.69 18.64 16 43 H 0.03 1.54 8.05 -2.39 -0.02 1.52 16 44 H 0.09 4.66 5.98 -2.39 -0.01 4.65 16 45 H 0.26 13.92 8.32 -92.71 -0.77 13.14 16 46 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 48 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 49 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -74.06 403.41 0.91 -73.15 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.29 Total: 36.41 kcal Atomic # 6 Polarization: 35.96 SS G_CDS: 9.24 Total: 45.20 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -9.91 Total: -129.39 kcal Atomic # 8 Polarization: -70.81 SS G_CDS: -0.16 Total: -70.97 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.06 0.91 -73.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324830960.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.895 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds