Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48505 * 109.46943 * 274.66573 * 3 2 1 5 5 H 1.48502 * 109.47165 * 34.66375 * 3 2 1 6 6 H 1.48499 * 109.47042 * 154.66648 * 3 2 1 7 7 C 1.37876 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99840 * 354.90184 * 7 2 1 9 9 C 1.50701 * 120.00167 * 174.90717 * 7 2 1 10 10 H 1.08995 * 109.52677 * 335.08618 * 9 7 2 11 11 C 1.53040 * 109.49636 * 214.99925 * 9 7 2 12 12 C 1.53076 * 109.65532 * 178.74762 * 11 9 7 13 13 C 1.53194 * 109.29729 * 61.15721 * 12 11 9 14 14 N 1.46928 * 108.88949 * 305.57898 * 13 12 11 15 15 C 1.34782 * 120.62748 * 233.55808 * 14 13 12 16 16 O 1.21352 * 119.99779 * 171.27396 * 15 14 13 17 17 C 1.49452 * 119.99853 * 351.27341 * 15 14 13 18 18 O 1.21347 * 119.99984 * 353.61680 * 17 15 14 19 19 N 1.34775 * 120.00052 * 173.61720 * 17 15 14 20 20 C 1.46496 * 120.00321 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47249 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47544 * 295.00120 * 21 20 19 23 23 C 1.52993 * 109.47612 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.46997 * 60.00220 * 23 22 21 25 25 F 1.39899 * 109.47086 * 59.99802 * 24 23 22 26 26 C 1.52997 * 109.46760 * 299.99905 * 24 23 22 27 27 C 1.52997 * 109.47252 * 175.00080 * 21 20 19 28 28 C 1.46926 * 118.74087 * 53.53570 * 14 13 12 29 29 H 0.96998 * 119.99577 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46081 * 298.70312 * 11 9 7 31 31 H 1.09004 * 109.45756 * 58.68057 * 11 9 7 32 32 H 1.09000 * 109.39087 * 301.28170 * 12 11 9 33 33 H 1.09001 * 109.62199 * 181.17123 * 12 11 9 34 34 H 1.08999 * 109.58789 * 185.72069 * 13 12 11 35 35 H 1.09002 * 109.58597 * 65.43423 * 13 12 11 36 36 H 0.97011 * 119.99613 * 359.97438 * 19 17 15 37 37 H 1.09000 * 109.47003 * 300.00203 * 20 19 17 38 38 H 1.08997 * 109.46901 * 60.00157 * 20 19 17 39 39 H 1.09005 * 109.47036 * 55.00048 * 21 20 19 40 40 H 1.08996 * 109.47649 * 300.00223 * 22 21 20 41 41 H 1.09002 * 109.46924 * 59.99632 * 22 21 20 42 42 H 1.09000 * 109.47630 * 300.00450 * 23 22 21 43 43 H 1.08998 * 109.47799 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.47067 * 180.02562 * 24 23 22 45 45 H 1.08996 * 109.47974 * 299.99706 * 26 24 23 46 46 H 1.09002 * 109.46943 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.47271 * 300.00036 * 27 21 20 48 48 H 1.08997 * 109.47267 * 60.00319 * 27 21 20 49 49 H 1.08996 * 109.58859 * 66.18147 * 28 14 13 50 50 H 1.09003 * 109.58551 * 186.46306 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3980 2.1034 -1.3955 5 1 1.4994 2.6222 0.7963 6 1 3.5925 1.4137 0.5991 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 0.0822 9 6 3.5071 -1.1966 -0.1164 10 1 3.8355 -0.2854 -0.6164 11 6 3.9547 -2.4144 -0.9279 12 6 5.4784 -2.4037 -1.0744 13 6 6.1211 -2.4813 0.3140 14 7 5.5847 -1.3969 1.1477 15 6 6.4135 -0.5399 1.7765 16 8 5.9646 0.4420 2.3305 17 6 7.8853 -0.7990 1.7913 18 8 8.3232 -1.8367 1.3396 19 7 8.7261 0.1198 2.3063 20 6 10.1688 -0.1344 2.3214 21 6 10.8900 1.0574 2.9540 22 6 10.7059 2.2927 2.0703 23 6 11.4267 3.4846 2.7032 24 6 12.9180 3.1684 2.8334 25 9 13.4541 2.9188 1.5655 26 6 13.1021 1.9332 3.7171 27 6 12.3813 0.7408 3.0837 28 6 4.1276 -1.2641 1.2826 29 1 -0.4849 0.8401 0.0004 30 1 3.6477 -3.3256 -0.4147 31 1 3.4951 -2.3814 -1.9157 32 1 5.7881 -1.4824 -1.5677 33 1 5.7949 -3.2600 -1.6701 34 1 7.2018 -2.3720 0.2232 35 1 5.8883 -3.4430 0.7712 36 1 8.3760 0.9494 2.6671 37 1 10.3732 -1.0336 2.9026 38 1 10.5239 -0.2732 1.3003 39 1 10.4727 1.2520 3.9420 40 1 11.1232 2.0982 1.0824 41 1 9.6435 2.5182 1.9779 42 1 11.0090 3.6791 3.6911 43 1 11.2959 4.3646 2.0735 44 1 13.4314 4.0174 3.2847 45 1 12.6845 2.1275 4.7050 46 1 14.1645 1.7076 3.8095 47 1 12.5125 -0.1392 3.7133 48 1 12.7987 0.5463 2.0958 49 1 3.7301 -2.1266 1.8175 50 1 3.8932 -0.3529 1.8330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328212213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -136.189921 kcal Electronic energy + Delta-G solvation = -30482.466850 eV Core-core repulsion = 26230.138649 eV Total energy + Delta-G solvation = -4252.328202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.01941 -40.74242 -39.08330 -38.14973 -37.08622 -35.02532 -33.25142 -31.88249 -31.52232 -31.23840 -30.49451 -27.02742 -25.42518 -25.12431 -23.42106 -22.70015 -21.85726 -21.57416 -20.43034 -19.92834 -18.97854 -17.52395 -16.95844 -16.84765 -16.64231 -16.29106 -15.76738 -15.73727 -15.61046 -15.04723 -14.66866 -14.27887 -14.14611 -13.97224 -13.81013 -13.69965 -13.49676 -13.19802 -13.11265 -12.74010 -12.60264 -12.47875 -12.34365 -12.21344 -12.14803 -11.86342 -11.66968 -11.54701 -11.13954 -11.03211 -10.73727 -10.64973 -10.61232 -10.51232 -10.46468 -10.07167 -9.71407 -9.53475 -9.38491 -9.21399 -8.77686 -8.64642 -8.12053 -6.13046 -4.13958 1.59240 2.50429 3.29916 3.39603 3.40411 3.51132 3.72010 3.98138 4.02455 4.13553 4.32898 4.41697 4.47614 4.51116 4.62863 4.68167 4.81079 4.93694 4.95761 5.18029 5.21251 5.27891 5.38111 5.42784 5.45042 5.48498 5.51605 5.55177 5.63979 5.70917 5.76652 5.78306 5.91884 5.98734 6.04138 6.19434 6.23993 6.38239 6.48595 6.56134 6.64985 6.78199 6.84169 7.06369 7.25694 7.33942 7.64744 7.72626 7.86851 8.25895 8.47077 8.92341 9.50239 10.99244 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002522 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.179324 B =11101.199066 C =12066.584007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.867 3.133 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.008 3.992 10 H 0.035 0.965 11 C -0.106 4.106 12 C -0.137 4.137 13 C 0.072 3.928 14 N -0.571 5.571 15 C 0.495 3.505 16 O -0.532 6.532 17 C 0.510 3.490 18 O -0.514 6.514 19 N -0.703 5.703 20 C 0.122 3.878 21 C -0.101 4.101 22 C -0.121 4.121 23 C -0.146 4.146 24 C 0.090 3.910 25 F -0.212 7.212 26 C -0.144 4.144 27 C -0.113 4.113 28 C 0.107 3.893 29 H 0.265 0.735 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.452 3.284 7.012 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.694 3.306 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.012 4.012 10 H 0.053 0.947 11 C -0.144 4.144 12 C -0.175 4.175 13 C -0.050 4.050 14 N -0.303 5.303 15 C 0.276 3.724 16 O -0.410 6.410 17 C 0.292 3.708 18 O -0.391 6.391 19 N -0.357 5.357 20 C -0.001 4.001 21 C -0.120 4.120 22 C -0.158 4.158 23 C -0.184 4.184 24 C 0.054 3.946 25 F -0.193 7.193 26 C -0.182 4.182 27 C -0.151 4.151 28 C -0.014 4.014 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 27.352 3.154 6.956 28.398 hybrid contribution 0.073 1.293 0.122 1.301 sum 27.425 4.447 7.077 28.670 Atomic orbital electron populations 1.69906 1.06368 1.27140 1.49769 1.25079 0.94698 0.99091 0.93889 0.86986 0.81462 0.83737 0.78443 1.20507 1.21329 1.17573 1.20892 0.88393 0.94693 1.51182 0.90618 1.19458 0.96394 0.94760 0.90564 0.94683 1.21596 0.92299 0.99615 1.00850 1.22027 0.98061 1.01423 0.96025 1.22747 1.02453 0.89341 0.90438 1.48446 1.08189 1.28893 1.44731 1.19933 0.86820 0.84134 0.81490 1.90741 1.77292 1.26987 1.45931 1.20553 0.88170 0.83820 0.78257 1.90486 1.78225 1.25687 1.44740 1.45840 1.06891 1.21715 1.61264 1.21497 0.78711 0.97940 1.01960 1.21450 0.95987 0.94540 0.99986 1.21618 1.01043 0.93609 0.99551 1.22131 0.94041 0.99329 1.02862 1.21575 0.94481 0.98539 0.80021 1.92805 1.87713 1.95805 1.43022 1.22124 1.01846 0.94822 0.99414 1.21475 0.93569 0.97830 1.02198 1.22708 0.74300 1.02479 1.01887 0.92540 0.92748 0.92179 0.92442 0.91564 0.85437 0.91735 0.75127 0.90804 0.90788 0.90019 0.90836 0.91030 0.89971 0.90577 0.90093 0.89999 0.90607 0.90933 0.90799 0.91454 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.85 26.62 -169.99 -4.53 17.33 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.25 -6.34 5.99 56.52 0.34 -6.00 16 7 C -0.51 -14.04 8.86 -34.44 -0.31 -14.34 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C 0.01 0.18 1.79 -91.65 -0.16 0.02 16 10 H 0.03 0.85 5.60 -51.93 -0.29 0.56 16 11 C -0.11 -2.06 5.14 -26.67 -0.14 -2.20 16 12 C -0.14 -2.23 6.09 -26.59 -0.16 -2.40 16 13 C 0.07 1.17 5.98 -3.71 -0.02 1.15 16 14 N -0.57 -10.79 2.97 -173.27 -0.52 -11.31 16 15 C 0.49 9.03 7.73 -11.58 -0.09 8.94 16 16 O -0.53 -10.92 15.93 5.50 0.09 -10.83 16 17 C 0.51 7.60 7.74 -11.58 -0.09 7.51 16 18 O -0.51 -8.08 13.18 5.50 0.07 -8.01 16 19 N -0.70 -7.96 5.27 -60.74 -0.32 -8.28 16 20 C 0.12 1.06 5.06 -4.05 -0.02 1.04 16 21 C -0.10 -0.65 2.22 -90.62 -0.20 -0.85 16 22 C -0.12 -0.85 4.95 -26.74 -0.13 -0.99 16 23 C -0.15 -0.85 5.72 -26.73 -0.15 -1.00 16 24 C 0.09 0.53 4.12 -26.73 -0.11 0.42 16 25 F -0.21 -1.88 16.05 2.25 0.04 -1.85 16 26 C -0.14 -0.70 5.72 -26.71 -0.15 -0.85 16 27 C -0.11 -0.64 5.08 -26.71 -0.14 -0.78 16 28 C 0.11 2.31 5.53 -3.71 -0.02 2.29 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.13 2.02 4.31 -54.82 -0.24 1.78 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.41 4.37 7.14 -40.82 -0.29 4.08 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.60 7.80 -51.93 -0.41 0.20 16 41 H 0.07 0.54 7.18 -51.93 -0.37 0.17 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.49 7.80 -51.93 -0.41 0.09 16 49 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.08 2.01 5.89 -51.93 -0.31 1.70 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -32.21 385.64 -8.84 -41.05 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.27 Total: 2.37 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.99 Total: 0.01 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.06 Total: -45.89 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.16 Total: -18.84 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.53 Total: 17.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.21 -8.84 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328212213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.136 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds