Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46816 * 269.99416 * 3 2 1 5 5 H 1.48494 * 109.47308 * 29.99171 * 3 2 1 6 6 H 1.48501 * 109.47083 * 149.99317 * 3 2 1 7 7 C 1.37878 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99832 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.49405 * 60.06973 * 9 7 2 11 11 C 1.53042 * 109.51956 * 180.14718 * 9 7 2 12 12 C 1.53043 * 109.53339 * 181.33151 * 11 9 7 13 13 C 1.53631 * 109.24204 * 298.51364 * 12 11 9 14 14 N 1.46924 * 108.54319 * 54.85785 * 13 12 11 15 15 C 1.34775 * 120.63164 * 126.36924 * 14 13 12 16 16 O 1.21342 * 120.00201 * 188.42170 * 15 14 13 17 17 C 1.49454 * 119.99792 * 8.42237 * 15 14 13 18 18 O 1.21349 * 119.99858 * 6.74695 * 17 15 14 19 19 N 1.34773 * 119.99598 * 186.74377 * 17 15 14 20 20 C 1.46508 * 119.99765 * 180.02562 * 19 17 15 21 21 C 1.52996 * 109.47104 * 180.02562 * 20 19 17 22 22 C 1.52993 * 109.47678 * 64.99675 * 21 20 19 23 23 C 1.52996 * 109.47678 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.46834 * 300.00198 * 23 22 21 25 25 F 1.39908 * 109.46653 * 179.97438 * 24 23 22 26 26 C 1.53003 * 109.47276 * 59.99835 * 24 23 22 27 27 C 1.52998 * 109.46933 * 185.00238 * 21 20 19 28 28 C 1.46924 * 118.73613 * 306.09187 * 14 13 12 29 29 H 0.97006 * 119.99859 * 0.02562 * 1 2 3 30 30 H 1.08989 * 109.46059 * 301.35223 * 11 9 7 31 31 H 1.08997 * 109.45617 * 61.33181 * 11 9 7 32 32 H 1.09001 * 109.49840 * 58.58304 * 12 11 9 33 33 H 1.08998 * 109.49673 * 178.68531 * 12 11 9 34 34 H 1.09004 * 109.73718 * 295.11814 * 13 12 11 35 35 H 1.09001 * 109.65860 * 174.54780 * 13 12 11 36 36 H 0.96993 * 120.00576 * 0.02562 * 19 17 15 37 37 H 1.09000 * 109.46898 * 59.99885 * 20 19 17 38 38 H 1.09005 * 109.46755 * 300.00165 * 20 19 17 39 39 H 1.09003 * 109.47152 * 304.99386 * 21 20 19 40 40 H 1.08998 * 109.47213 * 300.00326 * 22 21 20 41 41 H 1.09003 * 109.47065 * 59.99658 * 22 21 20 42 42 H 1.08998 * 109.47752 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.47152 * 59.99711 * 23 22 21 44 44 H 1.08992 * 109.47439 * 299.99323 * 24 23 22 45 45 H 1.08998 * 109.47340 * 179.97438 * 26 24 23 46 46 H 1.09004 * 109.46998 * 59.99668 * 26 24 23 47 47 H 1.09001 * 109.47073 * 299.99042 * 27 21 20 48 48 H 1.08991 * 109.47645 * 59.99490 * 27 21 20 49 49 H 1.09002 * 109.58726 * 173.65021 * 28 14 13 50 50 H 1.08997 * 109.59130 * 294.07307 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6811 0.8916 11 6 4.0230 -2.6365 -0.0021 12 6 5.5531 -2.6370 0.0320 13 6 6.0877 -1.9319 -1.2238 14 7 5.4867 -0.5934 -1.2998 15 6 6.2628 0.5020 -1.4191 16 8 5.7705 1.6073 -1.3275 17 6 7.7298 0.3554 -1.6643 18 8 8.2025 -0.7416 -1.8778 19 7 8.5274 1.4416 -1.6483 20 6 9.9654 1.2980 -1.8892 21 6 10.6345 2.6719 -1.8158 22 6 10.5154 3.2219 -0.3931 23 6 11.1851 4.5956 -0.3196 24 6 12.6629 4.4631 -0.6931 25 9 13.2751 5.7193 -0.6264 26 6 12.7821 3.9131 -2.1159 27 6 12.1123 2.5400 -2.1896 28 6 4.0234 -0.4722 -1.2494 29 1 -0.4850 0.8401 -0.0004 30 1 3.6401 -3.1594 0.8741 31 1 3.6800 -3.1413 -0.9051 32 1 5.8973 -2.1105 0.9222 33 1 5.9161 -3.6646 0.0533 34 1 5.8174 -2.5048 -2.1109 35 1 7.1722 -1.8425 -1.1605 36 1 8.1496 2.3184 -1.4774 37 1 10.1270 0.8670 -2.8773 38 1 10.3970 0.6431 -1.1322 39 1 10.1434 3.3528 -2.5109 40 1 9.4627 3.3158 -0.1269 41 1 11.0066 2.5409 0.3020 42 1 11.0999 4.9876 0.6939 43 1 10.6943 5.2767 -1.0148 44 1 13.1537 3.7820 0.0020 45 1 13.8348 3.8191 -2.3821 46 1 12.2912 4.5943 -2.8110 47 1 12.6036 1.8592 -1.4945 48 1 12.1972 2.1482 -3.2031 49 1 3.7452 0.5807 -1.2031 50 1 3.5880 -0.9284 -2.1385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328212214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -130.597483 kcal Electronic energy + Delta-G solvation = -30448.707623 eV Core-core repulsion = 26196.621927 eV Total energy + Delta-G solvation = -4252.085696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.01325 -40.81792 -39.29789 -38.31587 -37.15337 -35.11454 -33.30197 -31.96567 -31.52508 -31.18993 -30.52503 -26.94468 -25.34941 -25.17115 -23.50498 -22.72074 -22.02448 -21.61659 -20.71336 -20.10294 -19.07539 -17.51334 -16.93052 -16.76649 -16.61774 -16.45990 -15.90717 -15.77755 -15.45630 -15.13697 -14.78233 -14.32093 -14.22647 -14.11063 -14.01378 -13.79360 -13.59573 -13.14207 -13.10034 -12.85073 -12.79132 -12.57755 -12.57143 -12.18019 -12.05487 -11.76268 -11.66902 -11.44250 -11.25961 -11.09649 -10.91086 -10.83432 -10.55928 -10.53758 -10.38034 -10.13714 -9.78240 -9.48560 -9.43517 -9.16461 -8.83633 -8.64442 -8.17680 -6.13154 -4.14779 1.53785 2.44198 3.33231 3.34235 3.41922 3.52856 3.66472 3.90616 3.99495 4.04752 4.27156 4.38960 4.42767 4.46435 4.54338 4.69794 4.76055 4.87886 4.93402 5.13179 5.18413 5.21336 5.33658 5.38454 5.41524 5.45286 5.46488 5.54655 5.59149 5.62506 5.65710 5.71004 5.83991 5.90400 6.02170 6.09311 6.12638 6.31928 6.42595 6.48174 6.57267 6.72782 6.77378 7.00395 7.11890 7.39775 7.60172 7.68076 7.81480 8.19547 8.46336 8.90344 9.47980 10.98749 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002514 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.523648 B =11135.268500 C =12270.683686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.006 3.994 10 H 0.031 0.969 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.071 3.929 14 N -0.570 5.570 15 C 0.494 3.506 16 O -0.531 6.531 17 C 0.512 3.488 18 O -0.513 6.513 19 N -0.704 5.704 20 C 0.122 3.878 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.145 4.145 24 C 0.090 3.910 25 F -0.217 7.217 26 C -0.144 4.144 27 C -0.108 4.108 28 C 0.097 3.903 29 H 0.265 0.735 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.930 4.609 -3.691 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.049 0.951 11 C -0.140 4.140 12 C -0.174 4.174 13 C -0.050 4.050 14 N -0.302 5.302 15 C 0.276 3.724 16 O -0.409 6.409 17 C 0.294 3.706 18 O -0.390 6.390 19 N -0.357 5.357 20 C -0.001 4.001 21 C -0.123 4.123 22 C -0.154 4.154 23 C -0.183 4.183 24 C 0.053 3.947 25 F -0.198 7.198 26 C -0.182 4.182 27 C -0.146 4.146 28 C -0.023 4.023 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.147 0.853 36 H 0.249 0.751 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.840 4.534 -3.796 27.483 hybrid contribution 0.075 1.442 -0.001 1.444 sum 26.915 5.975 -3.797 27.830 Atomic orbital electron populations 1.69893 1.06262 1.27157 1.49915 1.25064 0.94783 0.99124 0.94121 0.86983 0.79810 0.83447 0.78861 1.20079 1.22239 1.18612 1.20961 0.88108 0.94681 1.51612 0.90358 1.19485 0.96865 0.92377 0.92640 0.95063 1.21473 0.92421 0.98572 1.01567 1.22079 0.98124 0.99690 0.97522 1.22878 1.02002 0.81795 0.98337 1.48373 1.08269 1.06283 1.67252 1.19958 0.87027 0.85492 0.79957 1.90747 1.74714 1.25116 1.50355 1.20487 0.88053 0.84524 0.77540 1.90486 1.76134 1.24690 1.47733 1.45837 1.08134 1.10764 1.71014 1.21505 0.79116 0.97085 1.02411 1.21497 0.96467 0.96286 0.98083 1.21593 1.01705 0.95803 0.96315 1.22124 0.94286 0.98649 1.03263 1.21638 0.93469 0.81015 0.98536 1.92817 1.84835 1.44452 1.97646 1.22102 1.02193 0.97718 0.96171 1.21423 0.93842 0.96571 1.02775 1.22830 0.74894 1.02719 1.01821 0.92486 0.92210 0.92461 0.92273 0.91516 0.91556 0.85290 0.75061 0.90709 0.90723 0.89795 0.90677 0.91010 0.90505 0.90542 0.89919 0.90530 0.90577 0.90984 0.90564 0.90232 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.88 22.81 24.32 -169.99 -4.13 18.68 16 4 H -0.27 -7.11 6.92 56.52 0.39 -6.72 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.26 -6.76 6.53 56.52 0.37 -6.39 16 7 C -0.52 -14.22 9.15 -34.44 -0.31 -14.53 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 10 H 0.03 0.77 7.21 -51.93 -0.37 0.40 16 11 C -0.10 -1.97 5.11 -26.69 -0.14 -2.10 16 12 C -0.14 -2.15 6.10 -26.38 -0.16 -2.31 16 13 C 0.07 1.14 6.01 -3.48 -0.02 1.12 16 14 N -0.57 -10.89 2.97 -173.01 -0.51 -11.40 16 15 C 0.49 9.07 7.73 -11.58 -0.09 8.98 16 16 O -0.53 -11.09 15.93 5.50 0.09 -11.00 16 17 C 0.51 7.44 7.74 -11.58 -0.09 7.35 16 18 O -0.51 -7.79 13.18 5.50 0.07 -7.71 16 19 N -0.70 -7.61 5.27 -60.72 -0.32 -7.93 16 20 C 0.12 0.95 5.06 -4.04 -0.02 0.93 16 21 C -0.10 -0.59 2.23 -90.63 -0.20 -0.79 16 22 C -0.12 -0.69 5.08 -26.74 -0.14 -0.82 16 23 C -0.15 -0.89 5.66 -26.73 -0.15 -1.04 16 24 C 0.09 0.55 3.88 -26.73 -0.10 0.45 16 25 F -0.22 -1.96 17.08 2.25 0.04 -1.92 16 26 C -0.14 -0.73 5.66 -26.76 -0.15 -0.88 16 27 C -0.11 -0.48 5.20 -26.76 -0.14 -0.62 16 28 C 0.10 2.18 5.12 -3.71 -0.02 2.16 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.13 1.98 4.30 -54.84 -0.24 1.74 16 36 H 0.41 4.24 7.14 -40.82 -0.29 3.95 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.51 7.18 -51.93 -0.37 0.14 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 1.96 2.32 -51.93 -0.12 1.84 16 50 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -32.57 383.12 -8.40 -40.97 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.18 Total: 1.17 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.00 Total: -0.18 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.06 Total: -45.77 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.13 Total: 18.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.57 -8.40 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328212214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.625 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds