Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00131 * 3 2 1 5 5 H 1.48497 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47202 * 120.00423 * 3 2 1 7 7 C 1.37883 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00349 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49598 * 299.93972 * 9 7 2 11 11 C 1.53040 * 109.52714 * 179.85715 * 9 7 2 12 12 C 1.53035 * 109.53704 * 178.66864 * 11 9 7 13 13 C 1.52763 * 109.38612 * 61.24345 * 12 11 9 14 14 N 1.46933 * 109.00564 * 305.58685 * 13 12 11 15 15 C 1.34769 * 120.62824 * 233.58663 * 14 13 12 16 16 O 1.21354 * 120.00227 * 184.82716 * 15 14 13 17 17 C 1.49450 * 120.00522 * 4.82726 * 15 14 13 18 18 O 1.21354 * 119.99842 * 274.49746 * 17 15 14 19 19 N 1.34769 * 120.00279 * 94.76571 * 17 15 14 20 20 C 1.46925 * 120.62989 * 4.86377 * 19 17 15 21 21 C 1.53186 * 108.77734 * 126.36800 * 20 19 17 22 22 C 1.53042 * 109.31343 * 54.63799 * 21 20 19 23 23 C 1.53042 * 109.53568 * 298.63402 * 22 21 20 24 24 H 1.09000 * 109.49839 * 301.41391 * 23 22 21 25 25 C 1.52994 * 109.49994 * 181.34931 * 23 22 21 26 26 C 1.53004 * 109.47410 * 175.00119 * 25 23 22 27 27 F 1.39901 * 109.47224 * 179.97438 * 26 25 23 28 28 C 1.46927 * 120.63479 * 184.58469 * 19 17 15 29 29 C 1.46926 * 118.73561 * 53.30726 * 14 13 12 30 30 H 0.96999 * 119.99323 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.45926 * 298.69178 * 11 9 7 32 32 H 1.08999 * 109.45642 * 58.66017 * 11 9 7 33 33 H 1.09003 * 109.49760 * 181.31772 * 12 11 9 34 34 H 1.08994 * 109.50281 * 301.37936 * 12 11 9 35 35 H 1.08997 * 109.51419 * 185.70598 * 13 12 11 36 36 H 1.08998 * 109.43310 * 65.41936 * 13 12 11 37 37 H 1.09007 * 109.58649 * 246.15300 * 20 19 17 38 38 H 1.08999 * 109.58613 * 6.57864 * 20 19 17 39 39 H 1.09001 * 109.50282 * 174.58575 * 21 20 19 40 40 H 1.09000 * 109.50080 * 294.65096 * 21 20 19 41 41 H 1.08998 * 109.46219 * 58.65416 * 22 21 20 42 42 H 1.09000 * 109.46576 * 178.63459 * 22 21 20 43 43 H 1.09004 * 109.47147 * 294.99855 * 25 23 22 44 44 H 1.09001 * 109.47157 * 54.99735 * 25 23 22 45 45 H 1.08995 * 109.47041 * 299.99913 * 26 25 23 46 46 H 1.08995 * 109.46903 * 59.99900 * 26 25 23 47 47 H 1.09003 * 109.58595 * 353.41681 * 28 19 17 48 48 H 1.09004 * 109.59089 * 113.84219 * 28 19 17 49 49 H 1.08994 * 109.58996 * 66.43486 * 29 14 13 50 50 H 1.09008 * 109.58360 * 186.85732 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6254 -2.5580 0.8901 11 6 2.2444 -3.6634 -0.0048 12 6 1.4798 -4.9886 0.0287 13 6 0.6006 -5.0984 -1.2157 14 7 -0.2572 -3.9085 -1.3020 15 6 -1.5939 -4.0328 -1.4200 16 8 -2.2834 -3.0468 -1.5784 17 6 -2.2273 -5.3849 -1.3558 18 8 -2.3096 -6.0646 -2.3578 19 7 -2.7120 -5.8472 -0.1864 20 6 -2.7217 -4.9938 1.0096 21 6 -4.1440 -4.9564 1.5772 22 6 -4.6291 -6.3871 1.8221 23 6 -4.6579 -7.1517 0.4966 24 1 -5.3159 -6.6389 -0.2049 25 6 -5.1748 -8.5714 0.7371 26 6 -5.3216 -9.2947 -0.6032 27 9 -5.7937 -10.5931 -0.3832 28 6 -3.2465 -7.2120 -0.0846 29 6 0.3697 -2.5807 -1.2509 30 1 -0.4849 0.8401 0.0004 31 1 2.8531 -3.6180 -0.9078 32 1 2.8889 -3.5939 0.8715 33 1 2.1881 -5.8169 0.0493 34 1 0.8525 -5.0244 0.9193 35 1 -0.0199 -5.9918 -1.1454 36 1 1.2323 -5.1585 -2.1019 37 1 -2.0410 -5.4033 1.7562 38 1 -2.4087 -3.9849 0.7411 39 1 -4.1461 -4.4057 2.5178 40 1 -4.8068 -4.4638 0.8658 41 1 -3.9518 -6.8867 2.5148 42 1 -5.6318 -6.3627 2.2487 43 1 -4.4692 -9.1132 1.3669 44 1 -6.1442 -8.5259 1.2335 45 1 -6.0272 -8.7529 -1.2330 46 1 -4.3523 -9.3401 -1.0995 47 1 -3.2798 -7.6662 -1.0749 48 1 -2.6095 -7.8060 0.5708 49 1 0.9821 -2.4312 -2.1400 50 1 -0.4032 -1.8134 -1.2039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328298675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -140.346898 kcal Electronic energy + Delta-G solvation = -31488.446495 eV Core-core repulsion = 27235.938034 eV Total energy + Delta-G solvation = -4252.508462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.85470 -40.81491 -39.07458 -37.71464 -36.79611 -34.65096 -33.46818 -32.38860 -31.91599 -29.97830 -29.20429 -26.82002 -25.20132 -24.93576 -24.35407 -22.49257 -21.93094 -21.78429 -20.45926 -19.39190 -18.48597 -17.46943 -16.93668 -16.50729 -16.17211 -16.12453 -15.90123 -15.40170 -15.14623 -14.74737 -14.64218 -14.45897 -14.28902 -13.86639 -13.69738 -13.53297 -13.48319 -13.09062 -12.98674 -12.78399 -12.72029 -12.34050 -12.15448 -12.00435 -11.72818 -11.42819 -11.23417 -11.09011 -11.08452 -10.97766 -10.96185 -10.83604 -10.59990 -10.52737 -10.46994 -10.33255 -10.02134 -9.32852 -9.23654 -8.94427 -8.82232 -8.52391 -7.97535 -6.09099 -4.17315 2.33301 2.42293 3.02377 3.27408 3.33913 3.34954 3.65454 4.07092 4.30249 4.36210 4.40286 4.48356 4.65521 4.71208 4.79362 4.84430 4.93119 5.09145 5.18571 5.22370 5.29540 5.30799 5.37590 5.38502 5.45596 5.55649 5.57646 5.64804 5.69249 5.74761 5.86289 5.88209 5.91685 6.05913 6.12855 6.20662 6.30703 6.47695 6.53650 6.73265 6.85155 6.96585 7.06518 7.11332 7.48804 7.73143 7.84256 7.89411 8.00169 8.25498 8.45567 8.86216 9.48864 10.96594 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.002824 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.641123 B = 9912.841364 C =10348.006335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.108 3.892 14 N -0.585 5.585 15 C 0.507 3.493 16 O -0.513 6.513 17 C 0.521 3.479 18 O -0.526 6.526 19 N -0.598 5.598 20 C 0.103 3.897 21 C -0.134 4.134 22 C -0.112 4.112 23 C -0.103 4.103 24 H 0.081 0.919 25 C -0.143 4.143 26 C 0.055 3.945 27 F -0.221 7.221 28 C 0.110 3.890 29 C 0.110 3.890 30 H 0.265 0.735 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 -16.362 4.268 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.170 4.170 13 C -0.015 4.015 14 N -0.319 5.319 15 C 0.288 3.712 16 O -0.388 6.388 17 C 0.304 3.696 18 O -0.401 6.401 19 N -0.333 5.333 20 C -0.020 4.020 21 C -0.172 4.172 22 C -0.150 4.150 23 C -0.122 4.122 24 H 0.099 0.901 25 C -0.181 4.181 26 C 0.001 3.999 27 F -0.202 7.202 28 C -0.012 4.012 29 C -0.009 4.009 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.029 -16.065 3.621 18.321 hybrid contribution 0.446 0.842 0.007 0.953 sum -7.583 -15.223 3.628 17.389 Atomic orbital electron populations 1.69843 1.05774 1.27131 1.49194 1.25046 0.94914 0.99330 0.94658 0.86623 0.79577 0.82991 0.78632 1.20201 1.21230 1.20257 1.21025 0.92956 0.89958 1.52039 0.92262 1.18966 0.92570 0.92487 0.93639 0.95185 1.21646 0.98604 0.93811 1.00894 1.21869 0.98587 0.99436 0.97106 1.21617 0.93651 0.87000 0.99249 1.48584 1.04441 1.09862 1.69031 1.19943 0.83685 0.88528 0.79028 1.90828 1.61951 1.37245 1.48760 1.20786 0.78558 0.86992 0.83228 1.90736 1.57864 1.57541 1.33956 1.48100 1.60885 1.14445 1.09840 1.21886 0.97674 0.95882 0.86524 1.21897 0.96281 0.96995 1.02033 1.21568 1.01892 0.95362 0.96179 1.21413 0.96856 0.95344 0.98582 0.90089 1.22154 1.03112 0.95463 0.97378 1.22127 1.00766 0.78641 0.98400 1.92761 1.90630 1.40578 1.96263 1.21705 0.93684 0.82948 1.02838 1.22506 0.98863 0.80349 0.99227 0.92487 0.92961 0.92722 0.91875 0.92127 0.91600 0.91234 0.90629 0.88702 0.89991 0.91016 0.91386 0.91305 0.90365 0.90246 0.90633 0.90421 0.88784 0.90826 0.93314 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.43 11.39 55.43 0.63 -23.80 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.40 8.57 -34.44 -0.29 -13.70 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.07 5.11 -26.69 -0.14 -2.21 16 12 C -0.13 -1.99 6.06 -26.84 -0.16 -2.15 16 13 C 0.11 1.72 6.33 -3.93 -0.02 1.70 16 14 N -0.59 -11.56 2.98 -173.53 -0.52 -12.08 16 15 C 0.51 10.35 5.60 -11.59 -0.06 10.29 16 16 O -0.51 -12.30 16.33 5.49 0.09 -12.22 16 17 C 0.52 9.04 5.48 -11.59 -0.06 8.97 16 18 O -0.53 -9.99 16.50 5.49 0.09 -9.90 16 19 N -0.60 -7.99 2.98 -173.54 -0.52 -8.50 16 20 C 0.10 1.28 6.33 -3.71 -0.02 1.26 16 21 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 22 C -0.11 -0.87 5.17 -26.69 -0.14 -1.01 16 23 C -0.10 -0.83 2.32 -90.72 -0.21 -1.05 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 C -0.14 -0.96 5.14 -26.73 -0.14 -1.09 16 26 C 0.06 0.42 7.31 37.16 0.27 0.69 16 27 F -0.22 -2.23 17.36 2.25 0.04 -2.19 16 28 C 0.11 1.11 5.31 -3.93 -0.02 1.09 16 29 C 0.11 2.54 5.39 -3.71 -0.02 2.52 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.97 6.30 -51.93 -0.33 0.64 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.09 1.51 6.23 -51.93 -0.32 1.19 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.56 6.70 -51.93 -0.35 0.21 16 47 H 0.09 1.02 5.71 -51.93 -0.30 0.72 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.12 3.35 5.15 -51.92 -0.27 3.09 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -30.71 390.70 -9.10 -39.81 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.29 Total: 1.30 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.49 Total: 6.18 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.40 Total: -44.38 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.18 Total: -22.11 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.71 -9.10 -39.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328298675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.538 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds