Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00131 * 3 2 1 5 5 H 1.48497 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47202 * 120.00423 * 3 2 1 7 7 C 1.37883 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00349 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49598 * 299.93972 * 9 7 2 11 11 C 1.53040 * 109.52714 * 179.85715 * 9 7 2 12 12 C 1.53035 * 109.53704 * 178.66864 * 11 9 7 13 13 C 1.52763 * 109.38612 * 61.24345 * 12 11 9 14 14 N 1.46933 * 109.00564 * 305.58685 * 13 12 11 15 15 C 1.34769 * 120.62824 * 233.58663 * 14 13 12 16 16 O 1.21354 * 120.00227 * 184.82716 * 15 14 13 17 17 C 1.49450 * 120.00522 * 4.82726 * 15 14 13 18 18 O 1.21354 * 119.99842 * 274.49746 * 17 15 14 19 19 N 1.34769 * 120.00279 * 94.76571 * 17 15 14 20 20 C 1.46925 * 120.62989 * 4.86377 * 19 17 15 21 21 C 1.53186 * 108.77734 * 126.36800 * 20 19 17 22 22 C 1.53042 * 109.31343 * 54.63799 * 21 20 19 23 23 C 1.53042 * 109.53568 * 298.63402 * 22 21 20 24 24 H 1.09000 * 109.49839 * 301.41391 * 23 22 21 25 25 C 1.52994 * 109.49994 * 181.34931 * 23 22 21 26 26 C 1.53004 * 109.47410 * 175.00119 * 25 23 22 27 27 F 1.39901 * 109.47224 * 179.97438 * 26 25 23 28 28 C 1.46927 * 120.63479 * 184.58469 * 19 17 15 29 29 C 1.46926 * 118.73561 * 53.30726 * 14 13 12 30 30 H 0.96999 * 119.99323 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.45926 * 298.69178 * 11 9 7 32 32 H 1.08999 * 109.45642 * 58.66017 * 11 9 7 33 33 H 1.09003 * 109.49760 * 181.31772 * 12 11 9 34 34 H 1.08994 * 109.50281 * 301.37936 * 12 11 9 35 35 H 1.08997 * 109.51419 * 185.70598 * 13 12 11 36 36 H 1.08998 * 109.43310 * 65.41936 * 13 12 11 37 37 H 1.09007 * 109.58649 * 246.15300 * 20 19 17 38 38 H 1.08999 * 109.58613 * 6.57864 * 20 19 17 39 39 H 1.09001 * 109.50282 * 174.58575 * 21 20 19 40 40 H 1.09000 * 109.50080 * 294.65096 * 21 20 19 41 41 H 1.08998 * 109.46219 * 58.65416 * 22 21 20 42 42 H 1.09000 * 109.46576 * 178.63459 * 22 21 20 43 43 H 1.09004 * 109.47147 * 294.99855 * 25 23 22 44 44 H 1.09001 * 109.47157 * 54.99735 * 25 23 22 45 45 H 1.08995 * 109.47041 * 299.99913 * 26 25 23 46 46 H 1.08995 * 109.46903 * 59.99900 * 26 25 23 47 47 H 1.09003 * 109.58595 * 353.41681 * 28 19 17 48 48 H 1.09004 * 109.59089 * 113.84219 * 28 19 17 49 49 H 1.08994 * 109.58996 * 66.43486 * 29 14 13 50 50 H 1.09008 * 109.58360 * 186.85732 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6254 -2.5580 0.8901 11 6 2.2444 -3.6634 -0.0048 12 6 1.4798 -4.9886 0.0287 13 6 0.6006 -5.0984 -1.2157 14 7 -0.2572 -3.9085 -1.3020 15 6 -1.5939 -4.0328 -1.4200 16 8 -2.2834 -3.0468 -1.5784 17 6 -2.2273 -5.3849 -1.3558 18 8 -2.3096 -6.0646 -2.3578 19 7 -2.7120 -5.8472 -0.1864 20 6 -2.7217 -4.9938 1.0096 21 6 -4.1440 -4.9564 1.5772 22 6 -4.6291 -6.3871 1.8221 23 6 -4.6579 -7.1517 0.4966 24 1 -5.3159 -6.6389 -0.2049 25 6 -5.1748 -8.5714 0.7371 26 6 -5.3216 -9.2947 -0.6032 27 9 -5.7937 -10.5931 -0.3832 28 6 -3.2465 -7.2120 -0.0846 29 6 0.3697 -2.5807 -1.2509 30 1 -0.4849 0.8401 0.0004 31 1 2.8531 -3.6180 -0.9078 32 1 2.8889 -3.5939 0.8715 33 1 2.1881 -5.8169 0.0493 34 1 0.8525 -5.0244 0.9193 35 1 -0.0199 -5.9918 -1.1454 36 1 1.2323 -5.1585 -2.1019 37 1 -2.0410 -5.4033 1.7562 38 1 -2.4087 -3.9849 0.7411 39 1 -4.1461 -4.4057 2.5178 40 1 -4.8068 -4.4638 0.8658 41 1 -3.9518 -6.8867 2.5148 42 1 -5.6318 -6.3627 2.2487 43 1 -4.4692 -9.1132 1.3669 44 1 -6.1442 -8.5259 1.2335 45 1 -6.0272 -8.7529 -1.2330 46 1 -4.3523 -9.3401 -1.0995 47 1 -3.2798 -7.6662 -1.0749 48 1 -2.6095 -7.8060 0.5708 49 1 0.9821 -2.4312 -2.1400 50 1 -0.4032 -1.8134 -1.2039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328298675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -158.144536 kcal Electronic energy + Delta-G solvation = -31489.218259 eV Core-core repulsion = 27235.938034 eV Total energy + Delta-G solvation = -4253.280225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.53778 -42.16684 -40.37849 -38.91660 -38.42627 -35.55431 -35.32098 -33.55773 -33.26496 -31.68884 -29.99272 -28.14213 -26.98256 -26.26286 -25.12580 -23.87179 -23.47114 -22.55038 -21.45163 -20.78340 -19.79441 -18.92018 -18.34186 -18.03773 -17.56458 -17.14533 -16.72242 -16.57315 -16.10290 -16.03786 -15.84398 -15.74816 -15.60528 -15.27319 -15.11273 -14.62023 -14.52204 -14.39758 -14.30469 -14.04273 -13.91991 -13.63291 -13.62079 -13.00319 -12.86366 -12.77185 -12.60243 -12.39844 -12.32525 -12.27716 -12.15462 -11.94913 -11.85550 -11.70244 -11.66006 -11.54581 -11.21393 -11.12225 -10.97166 -10.59603 -10.49808 -9.90929 -9.65062 -8.11499 -6.26812 0.94348 1.01938 1.43213 1.44287 1.51684 1.52232 2.28113 2.43534 3.06573 3.18511 3.43684 3.69167 3.73634 3.88958 3.91938 3.96477 4.05916 4.07782 4.14932 4.21816 4.26701 4.37150 4.49547 4.51812 4.54029 4.65761 4.73000 4.73906 4.76698 4.77468 4.85116 4.86084 4.96444 5.06356 5.06465 5.18052 5.21299 5.22346 5.22721 5.28716 5.33344 5.41082 5.43603 5.59106 5.85775 5.89123 5.94606 6.28447 6.32377 6.58982 6.79357 6.88298 7.43201 8.91987 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.002824 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.641123 B = 9912.841364 C =10348.006335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.043 3.957 10 H 0.000 1.000 11 C -0.106 4.106 12 C -0.120 4.120 13 C 0.103 3.897 14 N -0.585 5.585 15 C 0.499 3.501 16 O -0.563 6.563 17 C 0.527 3.473 18 O -0.546 6.546 19 N -0.583 5.583 20 C 0.100 3.900 21 C -0.131 4.131 22 C -0.105 4.105 23 C -0.096 4.096 24 H 0.066 0.934 25 C -0.131 4.131 26 C 0.049 3.951 27 F -0.235 7.235 28 C 0.104 3.896 29 C 0.123 3.877 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.039 0.961 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -19.067 5.864 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.024 3.976 10 H 0.018 0.982 11 C -0.144 4.144 12 C -0.158 4.158 13 C -0.018 4.018 14 N -0.318 5.318 15 C 0.282 3.718 16 O -0.442 6.442 17 C 0.309 3.691 18 O -0.424 6.424 19 N -0.316 5.316 20 C -0.022 4.022 21 C -0.169 4.169 22 C -0.143 4.143 23 C -0.115 4.115 24 H 0.085 0.915 25 C -0.169 4.169 26 C -0.006 4.006 27 F -0.216 7.216 28 C -0.016 4.016 29 C 0.001 3.999 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.122 0.878 49 H 0.058 0.942 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.174 -18.825 5.259 20.821 hybrid contribution 0.179 1.687 -0.472 1.761 sum -6.996 -17.138 4.787 19.120 Atomic orbital electron populations 1.70029 1.07253 1.27366 1.50525 1.25826 0.95542 1.02685 0.94589 0.85670 0.78323 0.79047 0.78999 1.19595 1.21632 1.19217 1.21464 0.93360 0.91310 1.51117 0.91873 1.18885 0.92970 0.93777 0.91962 0.98206 1.21538 0.97754 0.93760 1.01354 1.21814 0.98798 0.98705 0.96503 1.21925 0.93660 0.85797 1.00457 1.48587 1.04897 1.09951 1.68343 1.20627 0.83670 0.89625 0.77863 1.90785 1.63089 1.39416 1.50909 1.20081 0.79226 0.85429 0.84347 1.90726 1.59321 1.57584 1.34791 1.48153 1.59079 1.15767 1.08591 1.21994 0.99994 0.93739 0.86488 1.21887 0.94085 0.99092 1.01805 1.21557 1.03276 0.93259 0.96176 1.21340 0.95243 0.96447 0.98478 0.91523 1.22050 1.03904 0.94001 0.96965 1.22273 1.01060 0.77982 0.99241 1.92734 1.90836 1.41681 1.96371 1.22077 0.95344 0.80710 1.03517 1.21984 0.97490 0.81449 0.98945 0.93072 0.92614 0.92072 0.87563 0.91921 0.89687 0.90024 0.87961 0.92996 0.88705 0.93120 0.89384 0.89621 0.89003 0.89299 0.90358 0.90019 0.89439 0.87795 0.94213 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.11 11.39 21.45 0.24 -52.87 16 2 C 0.01 0.72 5.30 84.66 0.45 1.17 16 3 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -27.96 8.57 25.60 0.22 -27.75 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.11 -3.79 5.11 30.62 0.16 -3.63 16 12 C -0.12 -3.28 6.06 30.53 0.19 -3.09 16 13 C 0.10 3.11 6.33 86.22 0.55 3.66 16 14 N -0.59 -23.69 2.98 -821.30 -2.45 -26.13 16 15 C 0.50 21.30 5.60 87.27 0.49 21.79 16 16 O -0.56 -29.09 16.33 -3.26 -0.05 -29.14 16 17 C 0.53 18.35 5.48 87.27 0.48 18.83 16 18 O -0.55 -20.66 16.50 -3.26 -0.05 -20.72 16 19 N -0.58 -14.95 2.98 -821.31 -2.45 -17.39 16 20 C 0.10 2.42 6.33 86.36 0.55 2.97 16 21 C -0.13 -2.46 6.08 30.67 0.19 -2.27 16 22 C -0.11 -1.28 5.17 30.62 0.16 -1.12 16 23 C -0.10 -1.30 2.32 -10.86 -0.03 -1.33 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 C -0.13 -1.32 5.14 30.59 0.16 -1.16 16 26 C 0.05 0.64 7.31 71.98 0.53 1.17 16 27 F -0.23 -4.28 17.36 44.97 0.78 -3.50 16 28 C 0.10 1.81 5.31 86.22 0.46 2.27 16 29 C 0.12 5.94 5.39 86.36 0.47 6.41 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.28 6.30 -2.39 -0.02 2.26 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.05 1.74 6.23 -2.39 -0.01 1.73 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.00 6.70 -2.39 -0.02 0.98 16 47 H 0.09 1.71 5.71 -2.39 -0.01 1.70 16 48 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.08 4.74 5.15 -2.38 -0.01 4.73 16 Total: -1.00 -71.80 390.70 3.95 -67.85 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.93 Total: 17.10 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 4.97 Total: 19.92 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -4.65 Total: -96.39 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.11 Total: -49.86 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.80 3.95 -67.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328298675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.292 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds