Wall clock time and date at job start Sat Apr 11 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00071 * 2 1 4 4 H 1.48504 * 109.47237 * 270.00034 * 3 2 1 5 5 H 1.48497 * 109.47486 * 30.00265 * 3 2 1 6 6 H 1.48499 * 109.47038 * 150.00380 * 3 2 1 7 7 C 1.37880 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00336 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.52419 * 60.08263 * 9 7 2 11 11 C 1.53035 * 109.50110 * 180.16433 * 9 7 2 12 12 C 1.53038 * 109.54251 * 181.31714 * 11 9 7 13 13 C 1.53630 * 109.24080 * 298.51600 * 12 11 9 14 14 N 1.46919 * 108.54467 * 54.85201 * 13 12 11 15 15 C 1.34777 * 120.62895 * 126.37213 * 14 13 12 16 16 O 1.21356 * 120.00051 * 186.91799 * 15 14 13 17 17 C 1.49449 * 120.00110 * 6.91419 * 15 14 13 18 18 O 1.21347 * 119.99914 * 6.30413 * 17 15 14 19 19 N 1.34780 * 120.00154 * 186.31124 * 17 15 14 20 20 C 1.46920 * 120.63419 * 172.96354 * 19 17 15 21 21 C 1.53188 * 108.77745 * 126.40875 * 20 19 17 22 22 C 1.53044 * 109.31229 * 54.63601 * 21 20 19 23 23 C 1.53036 * 109.53594 * 298.63723 * 22 21 20 24 24 H 1.09000 * 109.49467 * 301.40761 * 23 22 21 25 25 C 1.53007 * 109.49365 * 181.32033 * 23 22 21 26 26 C 1.53002 * 109.46843 * 175.00171 * 25 23 22 27 27 F 1.39898 * 109.46792 * 179.97438 * 26 25 23 28 28 C 1.46926 * 120.62921 * 352.98063 * 19 17 15 29 29 C 1.46919 * 118.73928 * 306.09607 * 14 13 12 30 30 H 0.96997 * 119.99939 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.45803 * 301.34032 * 11 9 7 32 32 H 1.09005 * 109.45902 * 61.31263 * 11 9 7 33 33 H 1.09006 * 109.49554 * 58.58279 * 12 11 9 34 34 H 1.08995 * 109.50397 * 178.65075 * 12 11 9 35 35 H 1.09003 * 109.73418 * 295.11254 * 13 12 11 36 36 H 1.09006 * 109.66121 * 174.54458 * 13 12 11 37 37 H 1.08999 * 109.58973 * 246.19992 * 20 19 17 38 38 H 1.09006 * 109.58542 * 6.62100 * 20 19 17 39 39 H 1.09000 * 109.49791 * 294.68369 * 21 20 19 40 40 H 1.08999 * 109.49535 * 174.58689 * 21 20 19 41 41 H 1.09001 * 109.46086 * 178.60933 * 22 21 20 42 42 H 1.09001 * 109.45573 * 58.65595 * 22 21 20 43 43 H 1.09006 * 109.46305 * 294.99390 * 25 23 22 44 44 H 1.08995 * 109.47645 * 54.99408 * 25 23 22 45 45 H 1.09008 * 109.46786 * 299.99250 * 26 25 23 46 46 H 1.08995 * 109.47623 * 59.99224 * 26 25 23 47 47 H 1.08999 * 109.58622 * 113.79872 * 28 19 17 48 48 H 1.09001 * 109.70760 * 353.45017 * 28 19 17 49 49 H 1.09003 * 109.58963 * 173.65027 * 29 14 13 50 50 H 1.09001 * 109.58761 * 293.92770 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5583 -0.8908 11 6 2.2449 -3.6629 0.0030 12 6 1.4810 -4.9886 -0.0302 13 6 0.6035 -5.0988 1.2260 14 7 -0.2557 -3.9094 1.3016 15 6 -1.5923 -4.0343 1.4215 16 8 -2.3018 -3.0519 1.3568 17 6 -2.2007 -5.3827 1.6339 18 8 -1.4882 -6.3485 1.8128 19 7 -3.5409 -5.5261 1.6266 20 6 -4.1512 -6.8615 1.6797 21 6 -5.1509 -6.9009 2.8398 22 6 -6.1550 -5.7568 2.6818 23 6 -5.4159 -4.4175 2.7263 24 1 -4.8801 -4.3290 3.6714 25 6 -6.4243 -3.2735 2.6013 26 6 -5.7013 -1.9357 2.7706 27 9 -6.6231 -0.8897 2.6557 28 6 -4.4192 -4.3499 1.5651 29 6 0.3704 -2.5813 1.2503 30 1 -0.4850 0.8400 0.0004 31 1 2.8890 -3.5929 -0.8736 32 1 2.8540 -3.6175 0.9058 33 1 0.8525 -5.0242 -0.9202 34 1 2.1896 -5.8164 -0.0519 35 1 1.2351 -5.1504 2.1129 36 1 -0.0159 -5.9936 1.1634 37 1 -4.6704 -7.0635 0.7429 38 1 -3.3763 -7.6113 1.8395 39 1 -4.6175 -6.7891 3.7837 40 1 -5.6805 -7.8536 2.8313 41 1 -6.8824 -5.7974 3.4925 42 1 -6.6705 -5.8555 1.7264 43 1 -6.8952 -3.3102 1.6189 44 1 -7.1866 -3.3749 3.3737 45 1 -5.2303 -1.8991 3.7530 46 1 -4.9390 -1.8343 1.9982 47 1 -4.9602 -4.3470 0.6188 48 1 -3.8230 -3.4412 1.6477 49 1 -0.4028 -1.8143 1.2038 50 1 0.9813 -2.4306 2.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328298681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:22 Heat of formation + Delta-G solvation = -125.593820 kcal Electronic energy + Delta-G solvation = -31628.050139 eV Core-core repulsion = 27376.181418 eV Total energy + Delta-G solvation = -4251.868720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.56770 -42.22340 -40.22681 -39.07033 -38.43144 -35.49683 -35.02019 -33.64448 -33.23136 -31.57320 -29.74662 -28.07819 -27.05939 -26.10270 -25.29001 -23.84093 -23.43178 -22.22499 -21.60897 -20.81749 -20.12509 -18.61704 -18.14549 -17.91340 -17.39954 -17.02975 -16.96193 -16.66252 -16.44553 -16.06190 -15.85361 -15.68373 -15.49197 -15.29191 -14.89476 -14.66662 -14.49723 -14.46959 -14.19183 -13.97410 -13.89429 -13.63435 -13.48973 -13.06059 -12.90785 -12.84563 -12.55519 -12.36907 -12.28778 -12.14672 -12.07495 -11.91753 -11.73106 -11.67139 -11.57125 -11.48382 -11.24600 -11.01101 -10.78118 -10.53510 -9.85248 -9.76385 -9.54251 -8.11263 -6.27525 0.32393 1.29789 1.42619 1.43233 1.53272 2.10664 2.39293 2.45443 3.09767 3.17777 3.46567 3.72864 3.83871 3.99023 4.03179 4.09450 4.13244 4.16134 4.18492 4.27108 4.33204 4.42105 4.58641 4.60580 4.62764 4.70144 4.78453 4.79979 4.83502 4.85135 4.93326 4.96181 5.02828 5.07250 5.10448 5.18050 5.21325 5.22215 5.27067 5.30309 5.37917 5.45717 5.56428 5.64397 5.85189 5.93067 6.00558 6.28398 6.38950 6.71488 6.83374 6.99493 7.42198 8.92305 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.003836 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.427994 B = 7298.019554 C = 9689.357693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.040 3.960 10 H -0.010 1.010 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.066 3.934 14 N -0.572 5.572 15 C 0.487 3.513 16 O -0.537 6.537 17 C 0.514 3.486 18 O -0.527 6.527 19 N -0.572 5.572 20 C 0.098 3.902 21 C -0.126 4.126 22 C -0.111 4.111 23 C -0.091 4.091 24 H 0.070 0.930 25 C -0.129 4.129 26 C 0.048 3.952 27 F -0.236 7.236 28 C 0.044 3.956 29 C 0.121 3.879 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.136 0.864 49 H 0.090 0.910 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -15.361 6.222 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.021 3.979 10 H 0.008 0.992 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.055 4.055 14 N -0.303 5.303 15 C 0.270 3.730 16 O -0.418 6.418 17 C 0.297 3.703 18 O -0.407 6.407 19 N -0.303 5.303 20 C -0.022 4.022 21 C -0.164 4.164 22 C -0.148 4.148 23 C -0.110 4.110 24 H 0.088 0.912 25 C -0.167 4.167 26 C -0.006 4.006 27 F -0.217 7.217 28 C -0.077 4.077 29 C -0.001 4.001 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.152 0.848 49 H 0.108 0.892 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.453 -15.233 6.276 20.652 hybrid contribution 0.549 1.550 -0.259 1.664 sum -11.904 -13.683 6.017 19.108 Atomic orbital electron populations 1.70039 1.07190 1.27348 1.50377 1.25821 0.95607 1.02616 0.94455 0.85588 0.78824 0.79272 0.78188 1.20267 1.21165 1.18849 1.21470 0.93280 0.91331 1.51431 0.92091 1.18886 0.93050 0.93761 0.92243 0.99199 1.21555 0.97784 0.94126 1.00982 1.21988 0.98830 0.98331 0.97118 1.23119 0.94784 0.89077 0.98533 1.48503 1.05211 1.09906 1.66666 1.20541 0.83544 0.89869 0.79013 1.90328 1.58428 1.40989 1.52036 1.19944 0.83760 0.88336 0.78226 1.90390 1.59230 1.41053 1.49987 1.48078 1.03738 1.09829 1.68695 1.22041 0.97192 0.82356 1.00653 1.21881 0.96647 1.00537 0.97305 1.21596 0.97550 0.91961 1.03724 1.21379 0.95512 0.95980 0.98137 0.91201 1.22043 0.98416 0.91623 1.04663 1.22265 0.90146 0.84387 1.03850 1.92714 1.69783 1.61346 1.97847 1.23405 0.94137 0.90866 0.99250 1.21971 0.97703 0.81847 0.98533 0.92959 0.92823 0.92464 0.93349 0.88275 0.90904 0.84147 0.89309 0.89274 0.92274 0.87756 0.89652 0.90523 0.90021 0.88704 0.90184 0.91490 0.90892 0.84758 0.89207 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.46 11.39 21.45 0.24 -53.22 16 2 C 0.01 0.82 5.30 84.66 0.45 1.27 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -29.23 8.56 25.60 0.22 -29.01 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.00 2.25 -11.46 -0.03 1.98 16 10 H -0.01 -0.59 8.14 -2.38 -0.02 -0.60 16 11 C -0.11 -4.27 5.10 30.62 0.16 -4.11 16 12 C -0.12 -4.13 6.10 30.82 0.19 -3.94 16 13 C 0.07 2.23 6.06 86.51 0.52 2.75 16 14 N -0.57 -23.64 2.97 -819.64 -2.43 -26.07 16 15 C 0.49 19.39 7.67 87.27 0.67 20.06 16 16 O -0.54 -23.63 12.44 -3.27 -0.04 -23.67 16 17 C 0.51 16.69 7.62 87.27 0.66 17.35 16 18 O -0.53 -17.24 12.55 -3.24 -0.04 -17.28 16 19 N -0.57 -14.69 2.97 -820.51 -2.44 -17.13 16 20 C 0.10 1.77 6.44 86.36 0.56 2.33 16 21 C -0.13 -1.63 6.08 30.67 0.19 -1.45 16 22 C -0.11 -1.37 5.17 30.62 0.16 -1.21 16 23 C -0.09 -1.63 2.34 -10.72 -0.03 -1.65 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 C -0.13 -2.23 5.14 30.60 0.16 -2.07 16 26 C 0.05 1.14 7.31 71.98 0.53 1.67 16 27 F -0.24 -6.62 17.36 44.97 0.78 -5.84 16 28 C 0.04 1.09 5.07 86.36 0.44 1.53 16 29 C 0.12 5.91 5.41 86.36 0.47 6.38 16 30 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.14 4.59 4.19 -57.66 -0.24 4.35 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.74 7.00 -2.38 -0.02 1.73 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.07 1.88 6.70 -2.39 -0.02 1.86 16 47 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.14 4.34 2.62 -76.87 -0.20 4.13 16 49 H 0.09 5.08 5.12 -2.39 -0.01 5.06 16 50 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.80 382.26 3.92 -61.88 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.51 Total: 23.89 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.31 Total: 11.87 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -4.63 Total: -96.42 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.08 Total: -40.95 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.78 Total: -5.84 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.80 3.92 -61.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328298681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.712 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds