Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99909 * 2 1 4 4 C 1.34771 * 120.00402 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99671 * 0.02562 * 4 2 1 6 6 C 1.50700 * 120.00276 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.46947 * 179.97438 * 6 4 2 8 8 N 1.46498 * 109.47074 * 179.97438 * 7 6 4 9 9 C 1.34779 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.21348 * 119.99768 * 0.02562 * 9 8 7 11 11 C 1.49450 * 120.00032 * 180.02562 * 9 8 7 12 12 O 1.21356 * 119.99981 * 353.51350 * 11 9 8 13 13 N 1.34774 * 120.00149 * 173.78998 * 11 9 8 14 14 C 1.47074 * 120.88489 * 180.82986 * 13 11 9 15 15 C 1.53700 * 108.27666 * 128.75482 * 14 13 11 16 16 N 1.46902 * 109.25471 * 54.08571 * 15 14 13 17 17 C 1.46896 * 110.99756 * 172.60834 * 16 15 14 18 18 C 1.50697 * 109.47435 * 294.29945 * 17 16 15 19 19 H 1.08007 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00581 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99549 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47229 * 59.99877 * 22 20 18 24 24 H 1.48503 * 109.46843 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46945 * 299.99335 * 22 20 18 26 26 C 1.46893 * 111.26804 * 296.75687 * 16 15 14 27 27 C 1.47082 * 120.87694 * 1.11057 * 13 11 9 28 28 H 1.08996 * 109.47102 * 240.00269 * 1 2 3 29 29 H 1.09000 * 109.47147 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47075 * 119.99848 * 1 2 3 31 31 H 1.09002 * 109.46995 * 270.00141 * 3 2 1 32 32 H 1.09001 * 109.46969 * 29.99390 * 3 2 1 33 33 H 1.09000 * 109.46951 * 150.00295 * 3 2 1 34 34 H 1.08997 * 109.47439 * 60.00042 * 6 4 2 35 35 H 1.08996 * 109.46994 * 299.99761 * 6 4 2 36 36 H 1.09003 * 109.47166 * 60.00474 * 7 6 4 37 37 H 1.09001 * 109.47490 * 299.99895 * 7 6 4 38 38 H 0.97003 * 119.99969 * 0.02562 * 8 7 6 39 39 H 1.08996 * 109.63545 * 248.52272 * 14 13 11 40 40 H 1.09000 * 109.62802 * 9.11122 * 14 13 11 41 41 H 1.09001 * 109.64614 * 294.08434 * 15 14 13 42 42 H 1.09001 * 109.41940 * 173.95105 * 15 14 13 43 43 H 1.09000 * 109.47800 * 54.30221 * 17 16 15 44 44 H 1.09008 * 109.46958 * 174.30245 * 17 16 15 45 45 H 0.97005 * 119.99532 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.49533 * 303.14448 * 26 16 15 47 47 H 1.08999 * 109.49656 * 183.06504 * 26 16 15 48 48 H 1.08992 * 109.62979 * 350.89963 * 27 13 11 49 49 H 1.09003 * 109.62769 * 111.48017 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2174 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1559 -2.6096 0.0023 8 7 5.6209 -2.6096 0.0022 9 6 6.2948 -3.7768 0.0037 10 8 5.6881 -4.8277 0.0046 11 6 7.7893 -3.7768 0.0042 12 8 8.3961 -2.7326 -0.1154 13 7 8.4632 -4.9369 0.1319 14 6 9.9336 -4.9575 0.1531 15 6 10.3868 -5.7569 1.3851 16 7 9.7479 -7.0796 1.3663 17 6 10.2865 -7.9395 2.4285 18 6 11.7388 -8.2308 2.1511 19 1 12.2143 -7.8179 1.2736 20 6 12.4606 -9.0242 3.0174 21 7 11.8817 -9.5265 4.0861 22 14 14.2610 -9.3846 2.6738 23 1 15.0224 -8.1103 2.6357 24 1 14.8055 -10.2540 3.7476 25 1 14.3866 -10.0757 1.3655 26 6 8.2870 -6.9672 1.4700 27 6 7.7476 -6.2167 0.2476 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3791 1.5835 -1.0277 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1384 0.5138 34 1 4.0089 -0.6531 0.8911 35 1 4.0095 -0.6535 -0.8888 36 1 3.7930 -3.1240 -0.8876 37 1 3.7923 -3.1229 0.8925 38 1 6.1059 -1.7695 0.0019 39 1 10.3064 -5.4339 -0.7536 40 1 10.3132 -3.9377 0.2169 41 1 10.0983 -5.2265 2.2926 42 1 11.4701 -5.8758 1.3616 43 1 10.1948 -7.4318 3.3886 44 1 9.7274 -8.8749 2.4572 45 1 12.3896 -10.0844 4.6958 46 1 8.0277 -6.4199 2.3763 47 1 7.8472 -7.9638 1.5081 48 1 6.6813 -6.0299 0.3738 49 1 7.9142 -6.8119 -0.6502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330536270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -67.799944 kcal Electronic energy + Delta-G solvation = -29399.716403 eV Core-core repulsion = 25170.273774 eV Total energy + Delta-G solvation = -4229.442628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97986 -40.35796 -38.79335 -37.58589 -36.21476 -35.77560 -34.29297 -32.37805 -31.72010 -30.73642 -28.71769 -28.40594 -27.01335 -25.87633 -24.79843 -23.43648 -22.68580 -21.69744 -20.88425 -19.87931 -19.23507 -17.71999 -17.60357 -16.87267 -16.85615 -16.45255 -16.28286 -16.08463 -15.66663 -15.10714 -14.89144 -14.72205 -14.45780 -14.20998 -14.00998 -13.82003 -13.67751 -13.50130 -13.39138 -13.28118 -13.10053 -12.81511 -12.75159 -12.37666 -12.21161 -12.01886 -11.96680 -11.42205 -11.23508 -10.97183 -10.78836 -10.71559 -10.59765 -10.53705 -10.39989 -9.88903 -9.56178 -9.36186 -9.28470 -8.96405 -8.58054 -8.43268 -7.29024 -6.03654 -4.05656 1.36780 2.08784 2.10140 2.53095 3.16461 3.33344 3.37548 3.40058 3.43260 3.98803 4.18993 4.28837 4.39515 4.41596 4.50100 4.70888 4.72644 4.84706 4.90069 5.04975 5.06313 5.28473 5.31496 5.36356 5.37615 5.46075 5.50101 5.62054 5.70419 5.79842 5.83506 5.85991 5.94584 6.32141 6.36240 6.44666 6.52558 6.59666 6.70394 6.87550 7.25565 7.30584 7.36889 7.59753 7.67848 7.76909 7.95364 8.04915 8.15324 8.50951 9.01215 9.58693 11.07048 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031178 B = 0.001748 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.858807 B =16016.795639 C =16435.967412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.625 5.625 3 C 0.074 3.926 4 C 0.517 3.483 5 O -0.530 6.530 6 C -0.154 4.154 7 C 0.131 3.869 8 N -0.704 5.704 9 C 0.513 3.487 10 O -0.502 6.502 11 C 0.503 3.497 12 O -0.537 6.537 13 N -0.568 5.568 14 C 0.110 3.890 15 C 0.052 3.948 16 N -0.537 5.537 17 C 0.193 3.807 18 C -0.510 4.510 19 H 0.063 0.937 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.042 3.958 27 C 0.059 3.941 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.025 0.975 42 H 0.099 0.901 43 H -0.009 1.009 44 H 0.032 0.968 45 H 0.262 0.738 46 H 0.024 0.976 47 H 0.082 0.918 48 H 0.149 0.851 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 23.796 -8.980 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.359 5.359 3 C -0.069 4.069 4 C 0.305 3.695 5 O -0.405 6.405 6 C -0.194 4.194 7 C 0.008 3.992 8 N -0.358 5.358 9 C 0.295 3.705 10 O -0.378 6.378 11 C 0.285 3.715 12 O -0.416 6.416 13 N -0.300 5.300 14 C -0.012 4.012 15 C -0.077 4.077 16 N -0.262 5.262 17 C 0.068 3.932 18 C -0.549 4.549 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.088 4.088 27 C -0.062 4.062 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.248 0.752 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.117 0.883 43 H 0.009 0.991 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.101 0.899 48 H 0.165 0.835 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.377 22.670 -9.319 31.874 hybrid contribution 1.096 0.572 0.765 1.454 sum -19.281 23.242 -8.554 31.386 Atomic orbital electron populations 1.21647 0.78726 1.02359 1.02648 1.47775 1.07351 1.06424 1.74390 1.21920 0.97563 0.85107 1.02281 1.20361 0.89678 0.83293 0.76209 1.90772 1.70321 1.30778 1.48673 1.21855 0.92942 0.99101 1.05484 1.21153 0.78100 0.95214 1.04752 1.45726 1.07326 1.09019 1.73731 1.20332 0.88901 0.84112 0.77171 1.90405 1.69657 1.29587 1.48135 1.19843 0.87774 0.84506 0.79400 1.90722 1.69502 1.31013 1.50335 1.48193 1.08007 1.06658 1.67114 1.22160 0.77395 1.01469 1.00163 1.22411 1.01355 0.89548 0.94380 1.62115 1.01978 1.11342 1.50811 1.19727 0.95504 0.91302 0.86645 1.21112 0.94733 1.30543 1.08508 0.91854 1.24995 0.98669 0.95867 0.95036 1.69952 1.36715 1.34064 1.12967 0.86544 0.84677 0.78229 0.77850 1.20283 1.21385 1.20140 1.22416 0.90814 0.99988 0.95537 1.23393 1.01100 0.82423 0.99319 0.91918 0.90591 0.91940 0.92170 0.90694 0.90600 0.87762 0.87777 0.89847 0.89814 0.75186 0.90205 0.89169 0.95688 0.88298 0.99127 0.94965 0.92845 0.95737 0.89922 0.83524 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.16 59.85 0.61 1.03 16 2 N -0.62 -3.37 3.27 -189.51 -0.62 -3.99 16 3 C 0.07 0.13 10.21 59.85 0.61 0.75 16 4 C 0.52 4.07 7.67 -10.99 -0.08 3.99 16 5 O -0.53 -6.48 15.98 5.56 0.09 -6.40 16 6 C -0.15 -0.79 4.37 -27.88 -0.12 -0.91 16 7 C 0.13 1.12 4.96 -4.04 -0.02 1.10 16 8 N -0.70 -6.61 5.55 -60.73 -0.34 -6.95 16 9 C 0.51 6.71 7.81 -11.58 -0.09 6.62 16 10 O -0.50 -7.52 13.03 5.50 0.07 -7.45 16 11 C 0.50 7.51 7.77 -11.59 -0.09 7.42 16 12 O -0.54 -8.53 15.95 5.49 0.09 -8.45 16 13 N -0.57 -9.08 3.00 -172.69 -0.52 -9.60 16 14 C 0.11 1.79 6.62 -3.37 -0.02 1.77 16 15 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 16 N -0.54 -11.55 4.62 -235.47 -1.09 -12.64 16 17 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 18 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 19 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 27 C 0.06 0.94 6.35 -3.60 -0.02 0.92 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.15 7.79 -51.93 -0.40 -0.25 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.07 0.05 7.92 -51.93 -0.41 -0.37 16 33 H 0.08 0.06 6.44 -51.93 -0.33 -0.28 16 34 H 0.10 0.33 7.40 -51.93 -0.38 -0.06 16 35 H 0.10 0.32 8.11 -51.93 -0.42 -0.10 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.41 3.07 7.96 -40.82 -0.32 2.74 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.39 7.07 -51.93 -0.37 1.03 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 44 H 0.03 0.89 7.97 -51.92 -0.41 0.48 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 1.49 7.99 -51.93 -0.41 1.08 16 48 H 0.15 2.30 3.93 -56.51 -0.22 2.08 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -35.24 397.16 -8.07 -43.32 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.78 Total: -0.89 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 0.32 Total: 16.44 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -1.83 Total: -59.06 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.25 Total: -22.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.24 -8.07 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330536270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.482 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds