Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00308 * 2 1 4 4 H 1.48500 * 109.46897 * 239.99601 * 3 2 1 5 5 H 1.48499 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47237 * 119.99617 * 3 2 1 7 7 C 1.37883 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00070 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.49598 * 299.93646 * 9 7 2 11 11 C 1.53041 * 109.52520 * 179.85628 * 9 7 2 12 12 C 1.53039 * 109.53652 * 178.66743 * 11 9 7 13 13 C 1.53189 * 109.31498 * 61.36332 * 12 11 9 14 14 N 1.46927 * 108.77695 * 305.36386 * 13 12 11 15 15 C 1.34772 * 120.63124 * 233.59212 * 14 13 12 16 16 O 1.21356 * 120.00145 * 174.94514 * 15 14 13 17 17 C 1.49454 * 120.00237 * 354.93909 * 15 14 13 18 18 O 1.21351 * 119.99792 * 85.49078 * 17 15 14 19 19 N 1.34772 * 120.00245 * 265.49600 * 17 15 14 20 20 C 1.46930 * 120.63044 * 4.76700 * 19 17 15 21 21 C 1.52760 * 109.00900 * 233.58871 * 20 19 17 22 22 C 1.53043 * 109.38347 * 305.58795 * 21 20 19 23 23 C 1.52994 * 109.45019 * 181.25649 * 22 21 20 24 24 C 1.53000 * 109.47360 * 64.93779 * 23 22 21 25 25 F 1.39899 * 109.47276 * 180.02562 * 24 23 22 26 26 C 1.53044 * 109.53696 * 61.24100 * 22 21 20 27 27 C 1.46923 * 120.63098 * 185.05095 * 19 17 15 28 28 C 1.46931 * 118.73743 * 53.60633 * 14 13 12 29 29 H 0.97002 * 119.99364 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.45490 * 298.68275 * 11 9 7 31 31 H 1.08995 * 109.46302 * 58.65605 * 11 9 7 32 32 H 1.08994 * 109.49950 * 301.40651 * 12 11 9 33 33 H 1.09000 * 109.49665 * 181.31017 * 12 11 9 34 34 H 1.08997 * 109.58866 * 185.57217 * 13 12 11 35 35 H 1.09001 * 109.59133 * 65.15000 * 13 12 11 36 36 H 1.08995 * 109.58543 * 353.42652 * 20 19 17 37 37 H 1.09004 * 109.58245 * 113.84567 * 20 19 17 38 38 H 1.08997 * 109.56173 * 185.55649 * 21 20 19 39 39 H 1.08993 * 109.38865 * 65.51575 * 21 20 19 40 40 H 1.09000 * 109.45654 * 301.22109 * 22 21 20 41 41 H 1.09003 * 109.47229 * 184.94211 * 23 22 21 42 42 H 1.09000 * 109.47185 * 304.93633 * 23 22 21 43 43 H 1.08996 * 109.46932 * 300.00235 * 24 23 22 44 44 H 1.09000 * 109.47091 * 59.99796 * 24 23 22 45 45 H 1.08999 * 109.49296 * 178.68193 * 26 22 21 46 46 H 1.09000 * 109.49327 * 58.58850 * 26 22 21 47 47 H 1.08995 * 109.59026 * 246.15014 * 27 19 17 48 48 H 1.09005 * 109.58531 * 6.44146 * 27 19 17 49 49 H 1.08998 * 109.58834 * 66.18284 * 28 14 13 50 50 H 1.09005 * 109.58232 * 186.61044 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5576 0.8907 11 6 2.2443 -3.6634 -0.0024 12 6 1.4797 -4.9887 0.0311 13 6 0.6018 -5.0989 -1.2194 14 7 -0.2564 -3.9091 -1.3013 15 6 -1.5930 -4.0334 -1.4210 16 8 -2.2989 -3.0466 -1.3954 17 6 -2.2059 -5.3865 -1.5856 18 8 -2.4648 -6.0582 -0.6086 19 7 -2.4711 -5.8607 -2.8189 20 6 -2.0691 -5.1059 -4.0136 21 6 -3.2895 -4.9073 -4.9107 22 6 -3.9263 -6.2663 -5.2102 23 6 -5.1303 -6.0722 -6.1341 24 6 -4.6543 -5.5395 -7.4871 25 9 -5.7553 -5.3615 -8.3317 26 6 -4.3863 -6.9153 -3.9027 27 6 -3.1733 -7.1394 -2.9942 28 6 0.3704 -2.5812 -1.2503 29 1 -0.4849 0.8401 -0.0004 30 1 2.8536 -3.6185 -0.9051 31 1 2.8882 -3.5936 0.8742 32 1 0.8513 -5.0237 0.9210 33 1 2.1879 -5.8169 0.0525 34 1 -0.0183 -5.9928 -1.1530 35 1 1.2337 -5.1552 -2.1058 36 1 -1.6739 -4.1346 -3.7163 37 1 -1.3058 -5.6623 -4.5576 38 1 -2.9832 -4.4354 -5.8443 39 1 -4.0131 -4.2708 -4.4016 40 1 -3.1946 -6.9106 -5.6977 41 1 -5.6362 -7.0271 -6.2771 42 1 -5.8213 -5.3587 -5.6854 43 1 -4.1485 -4.5847 -7.3440 44 1 -3.9633 -6.2531 -7.9358 45 1 -4.8607 -7.8725 -4.1190 46 1 -5.0994 -6.2600 -3.4026 47 1 -2.5020 -7.8649 -3.4535 48 1 -3.5043 -7.5105 -2.0242 49 1 0.9835 -2.4321 -2.1391 50 1 -0.4025 -1.8139 -1.2041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332080038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -138.820185 kcal Electronic energy + Delta-G solvation = -31113.255384 eV Core-core repulsion = 26860.813126 eV Total energy + Delta-G solvation = -4252.442259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -47.89175 -40.80406 -39.07269 -37.81681 -36.75975 -34.75060 -33.44195 -31.92892 -31.58673 -30.30517 -29.87922 -26.62753 -25.20014 -24.99208 -23.71980 -23.12141 -21.92927 -21.64162 -20.55656 -19.42297 -18.42548 -17.63198 -16.73274 -16.56777 -16.22446 -16.07342 -16.04608 -15.46867 -14.99776 -14.76102 -14.64387 -14.51219 -14.25365 -13.89096 -13.77001 -13.64653 -13.32607 -13.25434 -12.98019 -12.67933 -12.66895 -12.35898 -12.22139 -11.97737 -11.75979 -11.55619 -11.29684 -11.21288 -11.05590 -11.00996 -10.93864 -10.76628 -10.57238 -10.56911 -10.43716 -10.28614 -9.97324 -9.28475 -9.18525 -8.91940 -8.88300 -8.48981 -7.94437 -6.03633 -4.12949 2.35643 2.44830 2.95668 3.29568 3.35886 3.36880 3.65751 4.05597 4.24805 4.29906 4.39164 4.46880 4.55870 4.65058 4.78033 4.80974 4.93692 5.01799 5.14811 5.16850 5.23337 5.26828 5.32184 5.42634 5.43157 5.52727 5.56149 5.60130 5.62986 5.69245 5.73506 5.79002 5.90820 6.05527 6.13145 6.25701 6.27635 6.51867 6.59175 6.77073 6.90800 6.98168 7.07127 7.09508 7.53914 7.79370 7.88000 7.90323 8.03325 8.29789 8.47755 8.90965 9.52896 11.01591 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.002862 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.213347 B = 9779.311859 C =11025.474942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.108 3.892 14 N -0.587 5.587 15 C 0.506 3.494 16 O -0.509 6.509 17 C 0.519 3.481 18 O -0.520 6.520 19 N -0.600 5.600 20 C 0.107 3.893 21 C -0.136 4.136 22 C -0.085 4.085 23 C -0.147 4.147 24 C 0.058 3.942 25 F -0.222 7.222 26 C -0.129 4.129 27 C 0.111 3.889 28 C 0.111 3.889 29 H 0.265 0.735 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.050 0.950 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -15.992 -13.773 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.016 4.016 14 N -0.322 5.322 15 C 0.287 3.713 16 O -0.383 6.383 17 C 0.303 3.697 18 O -0.394 6.394 19 N -0.336 5.336 20 C -0.016 4.016 21 C -0.174 4.174 22 C -0.104 4.104 23 C -0.185 4.185 24 C 0.003 3.997 25 F -0.203 7.203 26 C -0.167 4.167 27 C -0.012 4.012 28 C -0.009 4.009 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.068 0.932 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.914 -15.663 -13.230 21.339 hybrid contribution 0.412 0.881 -0.031 0.973 sum -5.503 -14.782 -13.260 20.607 Atomic orbital electron populations 1.69872 1.05746 1.27049 1.49094 1.25065 0.94894 0.99304 0.94781 0.86632 0.79554 0.83074 0.78595 1.20240 1.21247 1.20265 1.21025 0.92897 0.89982 1.52093 0.92297 1.18978 0.92658 0.92447 0.93935 0.95105 1.21636 0.98529 0.93894 1.00764 1.21927 0.98552 0.99241 0.97390 1.21703 0.93606 0.87187 0.99081 1.48628 1.04357 1.09870 1.69298 1.19972 0.83653 0.88567 0.79122 1.90840 1.60402 1.37110 1.49980 1.20822 0.78885 0.86780 0.83240 1.90755 1.52927 1.57541 1.38182 1.48134 1.57878 1.22141 1.05487 1.21703 0.96840 0.97244 0.85807 1.22015 0.98031 0.97309 1.00071 1.21093 0.96762 0.97067 0.95457 1.22204 0.98886 1.02780 0.94645 1.22113 0.85869 1.02696 0.89034 1.92765 1.57189 1.97046 1.73272 1.21971 0.97886 1.01605 0.95267 1.21642 0.93412 0.84659 1.01441 1.22468 0.98802 0.80469 0.99146 0.92513 0.93057 0.92760 0.91809 0.91940 0.91400 0.91478 0.89260 0.90623 0.90180 0.90578 0.90397 0.90619 0.90505 0.90422 0.90825 0.90349 0.91025 0.91041 0.88691 0.93212 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 11.39 55.43 0.63 -24.56 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.75 8.57 -34.44 -0.29 -14.05 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.15 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 13 C 0.11 1.71 6.32 -3.71 -0.02 1.68 16 14 N -0.59 -11.55 2.97 -173.27 -0.51 -12.07 16 15 C 0.51 10.33 5.47 -11.59 -0.06 10.26 16 16 O -0.51 -12.33 16.52 5.49 0.09 -12.24 16 17 C 0.52 9.00 5.60 -11.59 -0.06 8.93 16 18 O -0.52 -10.22 16.33 5.50 0.09 -10.13 16 19 N -0.60 -7.57 2.98 -173.53 -0.52 -8.09 16 20 C 0.11 1.11 6.33 -3.93 -0.02 1.09 16 21 C -0.14 -1.14 5.13 -26.83 -0.14 -1.27 16 22 C -0.09 -0.56 2.15 -90.58 -0.19 -0.75 16 23 C -0.15 -0.94 5.14 -26.73 -0.14 -1.07 16 24 C 0.06 0.37 7.31 37.16 0.27 0.64 16 25 F -0.22 -2.15 17.36 2.25 0.04 -2.11 16 26 C -0.13 -0.98 5.36 -26.61 -0.14 -1.12 16 27 C 0.11 1.06 6.42 -3.71 -0.02 1.04 16 28 C 0.11 2.55 5.41 -3.71 -0.02 2.53 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.16 6.31 -51.93 -0.33 0.83 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.53 6.50 -51.93 -0.34 0.19 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.45 6.53 -51.93 -0.34 0.11 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 1.06 7.03 -51.93 -0.37 0.69 16 49 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.12 3.38 5.11 -51.93 -0.27 3.11 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -32.48 390.40 -9.04 -41.51 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.26 Total: 0.39 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.46 Total: 5.61 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.40 Total: -44.72 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.18 Total: -22.37 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.48 -9.04 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332080038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.306 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds