Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00308 * 2 1 4 4 H 1.48500 * 109.46897 * 239.99601 * 3 2 1 5 5 H 1.48499 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47237 * 119.99617 * 3 2 1 7 7 C 1.37883 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00070 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.49598 * 299.93646 * 9 7 2 11 11 C 1.53041 * 109.52520 * 179.85628 * 9 7 2 12 12 C 1.53039 * 109.53652 * 178.66743 * 11 9 7 13 13 C 1.53189 * 109.31498 * 61.36332 * 12 11 9 14 14 N 1.46927 * 108.77695 * 305.36386 * 13 12 11 15 15 C 1.34772 * 120.63124 * 233.59212 * 14 13 12 16 16 O 1.21356 * 120.00145 * 174.94514 * 15 14 13 17 17 C 1.49454 * 120.00237 * 354.93909 * 15 14 13 18 18 O 1.21351 * 119.99792 * 85.49078 * 17 15 14 19 19 N 1.34772 * 120.00245 * 265.49600 * 17 15 14 20 20 C 1.46930 * 120.63044 * 4.76700 * 19 17 15 21 21 C 1.52760 * 109.00900 * 233.58871 * 20 19 17 22 22 C 1.53043 * 109.38347 * 305.58795 * 21 20 19 23 23 C 1.52994 * 109.45019 * 181.25649 * 22 21 20 24 24 C 1.53000 * 109.47360 * 64.93779 * 23 22 21 25 25 F 1.39899 * 109.47276 * 180.02562 * 24 23 22 26 26 C 1.53044 * 109.53696 * 61.24100 * 22 21 20 27 27 C 1.46923 * 120.63098 * 185.05095 * 19 17 15 28 28 C 1.46931 * 118.73743 * 53.60633 * 14 13 12 29 29 H 0.97002 * 119.99364 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.45490 * 298.68275 * 11 9 7 31 31 H 1.08995 * 109.46302 * 58.65605 * 11 9 7 32 32 H 1.08994 * 109.49950 * 301.40651 * 12 11 9 33 33 H 1.09000 * 109.49665 * 181.31017 * 12 11 9 34 34 H 1.08997 * 109.58866 * 185.57217 * 13 12 11 35 35 H 1.09001 * 109.59133 * 65.15000 * 13 12 11 36 36 H 1.08995 * 109.58543 * 353.42652 * 20 19 17 37 37 H 1.09004 * 109.58245 * 113.84567 * 20 19 17 38 38 H 1.08997 * 109.56173 * 185.55649 * 21 20 19 39 39 H 1.08993 * 109.38865 * 65.51575 * 21 20 19 40 40 H 1.09000 * 109.45654 * 301.22109 * 22 21 20 41 41 H 1.09003 * 109.47229 * 184.94211 * 23 22 21 42 42 H 1.09000 * 109.47185 * 304.93633 * 23 22 21 43 43 H 1.08996 * 109.46932 * 300.00235 * 24 23 22 44 44 H 1.09000 * 109.47091 * 59.99796 * 24 23 22 45 45 H 1.08999 * 109.49296 * 178.68193 * 26 22 21 46 46 H 1.09000 * 109.49327 * 58.58850 * 26 22 21 47 47 H 1.08995 * 109.59026 * 246.15014 * 27 19 17 48 48 H 1.09005 * 109.58531 * 6.44146 * 27 19 17 49 49 H 1.08998 * 109.58834 * 66.18284 * 28 14 13 50 50 H 1.09005 * 109.58232 * 186.61044 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5576 0.8907 11 6 2.2443 -3.6634 -0.0024 12 6 1.4797 -4.9887 0.0311 13 6 0.6018 -5.0989 -1.2194 14 7 -0.2564 -3.9091 -1.3013 15 6 -1.5930 -4.0334 -1.4210 16 8 -2.2989 -3.0466 -1.3954 17 6 -2.2059 -5.3865 -1.5856 18 8 -2.4648 -6.0582 -0.6086 19 7 -2.4711 -5.8607 -2.8189 20 6 -2.0691 -5.1059 -4.0136 21 6 -3.2895 -4.9073 -4.9107 22 6 -3.9263 -6.2663 -5.2102 23 6 -5.1303 -6.0722 -6.1341 24 6 -4.6543 -5.5395 -7.4871 25 9 -5.7553 -5.3615 -8.3317 26 6 -4.3863 -6.9153 -3.9027 27 6 -3.1733 -7.1394 -2.9942 28 6 0.3704 -2.5812 -1.2503 29 1 -0.4849 0.8401 -0.0004 30 1 2.8536 -3.6185 -0.9051 31 1 2.8882 -3.5936 0.8742 32 1 0.8513 -5.0237 0.9210 33 1 2.1879 -5.8169 0.0525 34 1 -0.0183 -5.9928 -1.1530 35 1 1.2337 -5.1552 -2.1058 36 1 -1.6739 -4.1346 -3.7163 37 1 -1.3058 -5.6623 -4.5576 38 1 -2.9832 -4.4354 -5.8443 39 1 -4.0131 -4.2708 -4.4016 40 1 -3.1946 -6.9106 -5.6977 41 1 -5.6362 -7.0271 -6.2771 42 1 -5.8213 -5.3587 -5.6854 43 1 -4.1485 -4.5847 -7.3440 44 1 -3.9633 -6.2531 -7.9358 45 1 -4.8607 -7.8725 -4.1190 46 1 -5.0994 -6.2600 -3.4026 47 1 -2.5020 -7.8649 -3.4535 48 1 -3.5043 -7.5105 -2.0242 49 1 0.9835 -2.4321 -2.1391 50 1 -0.4025 -1.8139 -1.2041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332080038.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -158.873742 kcal Electronic energy + Delta-G solvation = -31114.124972 eV Core-core repulsion = 26860.813126 eV Total energy + Delta-G solvation = -4253.311846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 5.00 seconds Orbital eigenvalues (eV) -48.51221 -42.13219 -40.33346 -38.97148 -38.42792 -35.63283 -35.33580 -33.58482 -32.38368 -31.66155 -31.02698 -27.98952 -26.94368 -26.14714 -24.51434 -24.27604 -23.54019 -22.54301 -21.52048 -20.77262 -19.69903 -19.09359 -18.23211 -17.99848 -17.58476 -17.04839 -16.71808 -16.57664 -16.10034 -16.04378 -15.89601 -15.73720 -15.30048 -15.25298 -15.08197 -14.69704 -14.51477 -14.40317 -14.35748 -14.14270 -13.95710 -13.60751 -13.50887 -13.01292 -12.85394 -12.77349 -12.60965 -12.35403 -12.31960 -12.27594 -12.22676 -11.92929 -11.87724 -11.72871 -11.68680 -11.38005 -11.17029 -11.11938 -10.98384 -10.58612 -10.51043 -9.90625 -9.62263 -8.10812 -6.28433 0.97100 1.10655 1.41650 1.43029 1.47284 1.52639 2.33310 2.43493 3.10289 3.18199 3.49821 3.65362 3.69990 3.91381 3.97851 4.03613 4.07631 4.18282 4.19024 4.25791 4.29285 4.37527 4.50752 4.51159 4.55092 4.66509 4.71104 4.72864 4.76444 4.78507 4.80730 4.96925 5.00027 5.03942 5.04264 5.12915 5.16479 5.21815 5.22223 5.28759 5.38516 5.42529 5.46906 5.58083 5.86012 5.92083 5.95456 6.27621 6.32814 6.62808 6.80920 6.88636 7.42132 8.92542 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.002862 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.213347 B = 9779.311859 C =11025.474942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.066 0.934 9 C 0.035 3.965 10 H -0.021 1.021 11 C -0.103 4.103 12 C -0.127 4.127 13 C 0.105 3.895 14 N -0.586 5.586 15 C 0.499 3.501 16 O -0.563 6.563 17 C 0.524 3.476 18 O -0.552 6.552 19 N -0.584 5.584 20 C 0.100 3.900 21 C -0.134 4.134 22 C -0.075 4.075 23 C -0.142 4.142 24 C 0.051 3.949 25 F -0.242 7.242 26 C -0.125 4.125 27 C 0.106 3.894 28 C 0.124 3.876 29 H 0.260 0.740 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.046 0.954 47 H 0.110 0.890 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -18.814 -16.412 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.016 3.984 10 H -0.003 1.003 11 C -0.141 4.141 12 C -0.165 4.165 13 C -0.017 4.017 14 N -0.319 5.319 15 C 0.281 3.719 16 O -0.442 6.442 17 C 0.307 3.693 18 O -0.430 6.430 19 N -0.318 5.318 20 C -0.021 4.021 21 C -0.172 4.172 22 C -0.093 4.093 23 C -0.180 4.180 24 C -0.003 4.003 25 F -0.223 7.223 26 C -0.163 4.163 27 C -0.015 4.015 28 C 0.003 3.997 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.125 0.875 46 H 0.065 0.935 47 H 0.128 0.872 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.874 -18.540 -15.917 24.740 hybrid contribution -0.227 1.739 0.776 1.918 sum -4.101 -16.801 -15.141 22.985 Atomic orbital electron populations 1.70088 1.07514 1.27376 1.50549 1.25915 0.95517 1.03004 0.94552 0.85589 0.78201 0.78597 0.79154 1.18715 1.21719 1.19636 1.21454 0.93398 0.91090 1.51199 0.91536 1.18941 0.93164 0.94199 0.92141 1.00286 1.21518 0.97572 0.93335 1.01646 1.21905 0.98856 0.99069 0.96695 1.22028 0.93545 0.85757 1.00350 1.48633 1.04789 1.09985 1.68465 1.20666 0.83602 0.89625 0.77957 1.90798 1.61678 1.39393 1.52306 1.20139 0.79324 0.85217 0.84658 1.90741 1.54871 1.57849 1.39510 1.48246 1.56221 1.22935 1.04351 1.21975 0.98753 0.96202 0.85219 1.22024 0.96563 0.98459 1.00178 1.21053 0.97293 0.95998 0.94976 1.22128 0.98522 1.02869 0.94462 1.22334 0.85508 1.03743 0.88745 1.92726 1.58454 1.97200 1.73951 1.21974 0.96557 1.02698 0.95118 1.21983 0.94670 0.83358 1.01475 1.21922 0.97363 0.81486 0.98921 0.93126 0.91171 0.92787 0.94204 0.87326 0.89977 0.87779 0.92417 0.86523 0.87925 0.93631 0.87245 0.89514 0.92330 0.90020 0.88247 0.87463 0.93530 0.87242 0.90447 0.92196 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 11.39 21.45 0.24 -55.14 16 2 C 0.01 0.53 5.30 84.66 0.45 0.98 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -28.67 8.57 25.60 0.22 -28.45 16 8 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.74 2.25 -11.46 -0.03 1.71 16 10 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 11 C -0.10 -3.89 5.11 30.62 0.16 -3.73 16 12 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 13 C 0.10 3.09 6.32 86.36 0.55 3.64 16 14 N -0.59 -23.51 2.97 -820.47 -2.44 -25.95 16 15 C 0.50 21.35 5.47 87.27 0.48 21.83 16 16 O -0.56 -29.56 16.52 -3.27 -0.05 -29.62 16 17 C 0.52 18.40 5.60 87.27 0.49 18.89 16 18 O -0.55 -22.12 16.33 -3.25 -0.05 -22.17 16 19 N -0.58 -13.94 2.98 -821.30 -2.45 -16.39 16 20 C 0.10 1.90 6.33 86.22 0.55 2.44 16 21 C -0.13 -2.01 5.13 30.53 0.16 -1.85 16 22 C -0.07 -0.72 2.15 -10.77 -0.02 -0.75 16 23 C -0.14 -1.45 5.14 30.59 0.16 -1.29 16 24 C 0.05 0.52 7.31 71.98 0.53 1.05 16 25 F -0.24 -4.31 17.36 44.97 0.78 -3.53 16 26 C -0.13 -1.58 5.36 30.68 0.16 -1.41 16 27 C 0.11 1.74 6.42 86.36 0.55 2.30 16 28 C 0.12 5.97 5.41 86.36 0.47 6.44 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.26 6.23 -2.39 -0.01 2.24 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 1.50 6.31 -2.39 -0.02 1.49 16 37 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.10 1.09 6.50 -2.39 -0.02 1.07 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.75 6.53 -2.39 -0.02 0.73 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.62 7.03 -2.38 -0.02 1.60 16 49 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 50 H 0.08 4.61 5.11 -2.38 -0.01 4.59 16 Total: -1.00 -78.75 390.40 4.03 -74.72 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.93 Total: 14.56 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.05 Total: 18.03 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -4.64 Total: -97.48 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.11 Total: -51.79 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.75 4.03 -74.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332080038.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.153 kcal (2) G-P(sol) polarization free energy of solvation -78.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.00 seconds