Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47388 * 2 1 4 4 C 1.31005 * 119.99920 * 125.00205 * 3 2 1 5 5 C 1.50703 * 119.99928 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46862 * 124.99985 * 5 4 3 7 7 N 1.46899 * 109.47087 * 180.02562 * 6 5 4 8 8 C 1.46894 * 110.99710 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.31073 * 42.12129 * 8 7 6 10 10 C 1.54392 * 110.34526 * 279.82724 * 8 7 6 11 11 N 1.48144 * 104.62079 * 217.26254 * 10 8 7 12 12 C 1.34771 * 127.84088 * 219.61026 * 11 10 8 13 13 O 1.21285 * 120.00111 * 179.97438 * 12 11 10 14 14 C 1.50699 * 119.99884 * 359.96950 * 12 11 10 15 15 S 1.81003 * 109.47237 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00189 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99725 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00040 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00014 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99941 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47087 * 89.99727 * 20 18 16 22 22 H 1.48502 * 109.47306 * 209.99947 * 20 18 16 23 23 H 1.48498 * 109.47224 * 330.00048 * 20 18 16 24 24 C 1.48148 * 104.32179 * 39.58724 * 11 10 8 25 25 C 1.54286 * 110.34138 * 164.29155 * 8 7 6 26 26 C 1.52998 * 110.34830 * 237.74198 * 25 8 7 27 27 C 1.53002 * 110.34084 * 0.02562 * 25 8 7 28 28 H 1.08997 * 109.47027 * 59.99534 * 1 2 3 29 29 H 1.08994 * 109.47549 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46435 * 300.00179 * 1 2 3 31 31 H 1.09006 * 109.47147 * 120.00309 * 2 1 3 32 32 H 1.08999 * 109.46809 * 239.99513 * 2 1 3 33 33 H 1.08001 * 119.99801 * 304.99693 * 3 2 1 34 34 H 1.07994 * 119.99877 * 0.02562 * 4 3 2 35 35 H 1.08993 * 109.47729 * 245.00371 * 5 4 3 36 36 H 1.09005 * 109.46633 * 5.00546 * 5 4 3 37 37 H 1.09004 * 109.47191 * 300.00192 * 6 5 4 38 38 H 1.08999 * 109.46787 * 60.00151 * 6 5 4 39 39 H 1.00894 * 110.99788 * 303.95282 * 7 6 5 40 40 H 1.08995 * 110.40645 * 336.05543 * 10 8 7 41 41 H 1.09009 * 110.40220 * 98.47920 * 10 8 7 42 42 H 1.08995 * 109.47593 * 300.00364 * 14 12 11 43 43 H 1.09003 * 109.46799 * 60.00553 * 14 12 11 44 44 H 0.96999 * 120.00085 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.40692 * 201.62797 * 24 11 10 46 46 H 1.09001 * 110.50359 * 79.24597 * 24 11 10 47 47 H 1.08996 * 109.46704 * 59.99498 * 26 25 8 48 48 H 1.08992 * 109.47609 * 180.02562 * 26 25 8 49 49 H 1.09001 * 109.47128 * 300.00439 * 26 25 8 50 50 H 1.09000 * 109.47203 * 53.72742 * 27 25 8 51 51 H 1.09005 * 109.47066 * 173.72921 * 27 25 8 52 52 H 1.08996 * 109.46763 * 293.72232 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8643 1.8213 0.9293 5 6 3.3672 3.2420 0.9290 6 6 3.0721 3.8877 2.2844 7 7 3.5617 5.2727 2.2839 8 6 3.2955 5.9255 3.5726 9 1 3.5111 5.2426 4.3943 10 6 1.8289 6.4033 3.6395 11 7 1.8886 7.6930 4.3660 12 6 1.0283 8.1610 5.2919 13 8 1.2159 9.2459 5.8006 14 6 -0.1667 7.3361 5.6952 15 16 -1.1220 8.2296 6.9463 16 6 -2.4188 7.0701 7.2269 17 1 -2.4360 6.1372 6.6829 18 6 -3.4180 7.3556 8.1469 19 7 -4.3865 6.4892 8.3569 20 14 -3.3885 8.9695 9.0871 21 1 -4.1391 9.9999 8.3255 22 1 -4.0206 8.7790 10.4174 23 1 -1.9825 9.4125 9.2660 24 6 3.1087 8.3515 3.8441 25 6 4.1394 7.2101 3.7075 26 6 5.0219 7.1382 4.9553 27 6 4.9980 7.4161 2.4580 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.7066 2.1087 -0.7662 34 1 3.1904 1.1333 1.6952 35 1 4.4424 3.2469 0.7506 36 1 2.8656 3.8047 0.1416 37 1 1.9967 3.8829 2.4627 38 1 3.5735 3.3250 3.0717 39 1 4.5440 5.3088 2.0567 40 1 1.4310 6.5506 2.6355 41 1 1.2200 5.6853 4.1891 42 1 -0.7932 7.1531 4.8223 43 1 0.1707 6.3846 6.1063 44 1 -5.0850 6.6889 8.9995 45 1 3.4654 9.1035 4.5480 46 1 2.9122 8.8045 2.8723 47 1 5.6899 6.2804 4.8788 48 1 5.6108 8.0517 5.0369 49 1 4.3932 7.0314 5.8393 50 1 4.3624 7.3935 1.5727 51 1 5.5024 8.3804 2.5187 52 1 5.7407 6.6210 2.3925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332345235.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -49.399952 kcal Electronic energy + Delta-G solvation = -27213.585815 eV Core-core repulsion = 23531.234285 eV Total energy + Delta-G solvation = -3682.351530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 6.27 seconds Orbital eigenvalues (eV) -41.45157 -39.55678 -37.59779 -35.96139 -34.79369 -34.68975 -32.89250 -31.23366 -29.91060 -28.53918 -27.93741 -27.61461 -26.84968 -24.57354 -23.15036 -22.27185 -20.86431 -20.49810 -20.01672 -19.42205 -18.16418 -17.30243 -17.16379 -16.85139 -16.55556 -16.16755 -15.91896 -15.61115 -15.53309 -15.29746 -14.95216 -14.91677 -14.75624 -14.42701 -14.02185 -13.79400 -13.74681 -13.45094 -13.36057 -13.27593 -13.08928 -13.03103 -12.88128 -12.78426 -12.70798 -12.52439 -12.41729 -12.08548 -11.90947 -11.85955 -11.77307 -11.71107 -11.62724 -11.38018 -11.19345 -11.06341 -10.58055 -9.86449 -9.81730 -9.39266 -9.04144 -8.53805 -6.25606 0.92051 1.29869 1.37426 1.42690 1.46382 1.50930 1.97986 2.23218 2.64026 2.84261 3.12739 3.30551 3.50763 3.73437 3.85540 3.97310 4.11202 4.15540 4.22551 4.23855 4.28997 4.31777 4.36016 4.37257 4.49071 4.53531 4.58803 4.62970 4.68590 4.72908 4.77813 4.80116 4.86250 4.94294 4.95011 5.06271 5.09085 5.11216 5.14253 5.18229 5.20717 5.27238 5.32163 5.37986 5.53579 5.68454 5.86237 5.98725 6.05366 6.08615 6.35242 6.50500 6.90952 7.00693 8.58733 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008196 B = 0.002700 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.626537 B =10367.258673 C =13433.812296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.162 4.162 4 C -0.165 4.165 5 C -0.079 4.079 6 C 0.061 3.939 7 N -0.674 5.674 8 C 0.090 3.910 9 H 0.055 0.945 10 C 0.105 3.895 11 N -0.619 5.619 12 C 0.554 3.446 13 O -0.563 6.563 14 C -0.102 4.102 15 S -0.171 6.171 16 C -0.529 4.529 17 H 0.061 0.939 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.257 1.257 23 H -0.238 1.238 24 C 0.112 3.888 25 C -0.069 4.069 26 C -0.137 4.137 27 C -0.130 4.130 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.358 0.642 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.278 0.722 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.033 0.967 50 H 0.075 0.925 51 H 0.063 0.937 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.766 -9.224 -19.390 31.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.180 4.180 4 C -0.183 4.183 5 C -0.117 4.117 6 C -0.068 4.068 7 N -0.309 5.309 8 C -0.021 4.021 9 H 0.072 0.928 10 C -0.018 4.018 11 N -0.353 5.353 12 C 0.342 3.658 13 O -0.441 6.441 14 C -0.253 4.253 15 S 0.056 5.944 16 C -0.676 4.676 17 H 0.079 0.921 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.181 1.181 23 H -0.161 1.161 24 C -0.010 4.010 25 C -0.070 4.070 26 C -0.195 4.195 27 C -0.188 4.188 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.181 0.819 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.082 0.918 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 22.252 -7.405 -18.777 30.043 hybrid contribution -0.464 -1.391 0.730 1.638 sum 21.788 -8.796 -18.048 29.628 Atomic orbital electron populations 1.21726 0.95274 1.01999 1.01772 1.20669 0.96071 0.94182 1.02549 1.23020 0.98074 0.97639 0.99315 1.22882 0.99112 0.97207 0.99115 1.20561 1.01750 0.92290 0.97083 1.21946 1.00340 0.87684 0.96816 1.60599 1.24587 1.16429 1.29311 1.22297 0.93487 0.94965 0.91401 0.92751 1.22629 0.98026 0.83863 0.97288 1.48781 1.25844 1.21378 1.39293 1.19546 0.82716 0.85572 0.77934 1.90682 1.75162 1.23101 1.55200 1.23186 0.97270 1.02294 1.02556 1.84680 1.28767 1.29607 1.51386 1.22419 1.10973 1.05575 1.28676 0.92090 1.25557 0.93624 1.00307 0.96399 1.70011 1.12979 1.37038 1.35347 0.85873 0.81335 0.79788 0.79417 1.18590 1.18099 1.16147 1.22617 0.83281 0.95875 0.99216 1.21566 0.94599 0.92890 0.97923 1.21877 0.98952 1.03020 0.95640 1.21731 0.99108 1.02533 0.95416 0.92435 0.91968 0.93530 0.91678 0.90475 0.87279 0.87358 0.90109 0.91031 0.92023 0.94834 0.81925 0.89061 0.90713 0.87472 0.87493 0.91276 0.91452 0.89756 0.90805 0.91480 0.94753 0.90588 0.91753 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.10 -1.17 6.38 29.85 0.19 -0.98 16 3 C -0.16 -2.11 9.12 25.64 0.23 -1.88 16 4 C -0.16 -2.04 9.12 25.64 0.23 -1.81 16 5 C -0.08 -0.85 5.92 29.85 0.18 -0.67 16 6 C 0.06 0.77 5.51 86.31 0.48 1.24 16 7 N -0.67 -7.98 5.33 -486.89 -2.59 -10.58 16 8 C 0.09 1.42 3.00 45.83 0.14 1.56 16 9 H 0.05 0.93 7.53 -2.39 -0.02 0.91 16 10 C 0.11 2.24 6.23 86.54 0.54 2.78 16 11 N -0.62 -17.30 3.32 -807.94 -2.68 -19.98 16 12 C 0.55 21.05 7.93 87.66 0.70 21.75 16 13 O -0.56 -25.73 16.13 -3.04 -0.05 -25.78 16 14 C -0.10 -4.16 5.14 71.24 0.37 -3.80 16 15 S -0.17 -8.94 18.55 -56.49 -1.05 -9.99 16 16 C -0.53 -31.41 10.04 67.95 0.68 -30.73 16 17 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 18 C 0.05 2.78 5.50 84.86 0.47 3.24 16 19 N -0.92 -56.30 13.97 21.65 0.30 -56.00 16 20 Si 0.91 45.58 27.74 68.60 1.90 47.48 16 21 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 24 C 0.11 2.49 6.14 86.54 0.53 3.02 16 25 C -0.07 -1.04 1.03 -51.27 -0.05 -1.09 16 26 C -0.14 -2.15 8.24 71.98 0.59 -1.56 16 27 C -0.13 -1.24 7.15 71.98 0.51 -0.73 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.76 7.79 -2.38 -0.02 0.74 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.38 7.84 -2.91 -0.02 1.36 16 34 H 0.11 1.29 7.84 -2.91 -0.02 1.27 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.85 7.79 -2.38 -0.02 0.83 16 37 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 38 H 0.03 0.42 8.09 -2.39 -0.02 0.40 16 39 H 0.36 3.00 6.18 -89.70 -0.55 2.44 16 40 H 0.09 1.86 8.06 -2.39 -0.02 1.84 16 41 H 0.07 1.66 7.30 -2.38 -0.02 1.64 16 42 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 43 H 0.11 4.07 7.95 -2.39 -0.02 4.06 16 44 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.07 1.73 7.60 -2.39 -0.02 1.71 16 46 H 0.08 1.68 7.86 -2.39 -0.02 1.66 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.08 0.77 7.54 -2.39 -0.02 0.75 16 51 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 52 H 0.08 0.46 7.06 -2.39 -0.02 0.44 16 Total: -1.00 -72.31 424.39 2.61 -69.71 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.27 Total: 15.99 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 6.50 Total: -10.85 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.97 Total: -86.56 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Total: -72.31 2.61 -69.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332345235.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.306 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.28 seconds