Wall clock time and date at job start Sat Apr 11 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47051 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47367 * 29.99814 * 3 2 1 6 6 H 1.48499 * 109.47271 * 149.99958 * 3 2 1 7 7 C 1.38799 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99893 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00039 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47165 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99913 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00158 * 179.97438 * 11 10 9 14 14 C 1.45338 * 120.36466 * 0.02562 * 13 11 10 15 15 C 1.53447 * 108.42182 * 136.62855 * 14 13 11 16 16 C 1.52876 * 109.37994 * 282.27432 * 15 14 13 17 17 C 1.53957 * 109.72641 * 72.88960 * 16 15 14 18 18 C 1.52445 * 110.72869 * 44.36088 * 17 16 15 19 19 C 1.53803 * 109.41051 * 246.26672 * 18 17 16 20 20 H 1.09005 * 109.51939 * 317.93301 * 19 18 17 21 21 N 1.46897 * 109.52045 * 197.74412 * 19 18 17 22 22 C 1.46904 * 110.99897 * 154.99676 * 21 19 18 23 23 C 1.52999 * 109.47107 * 179.97438 * 22 21 19 24 24 C 1.53781 * 113.61834 * 272.49920 * 23 22 21 25 25 C 1.53781 * 87.08017 * 220.02101 * 24 23 22 26 26 C 1.53784 * 87.08359 * 25.43290 * 25 24 23 27 27 C 1.46959 * 120.36442 * 179.97438 * 13 11 10 28 28 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47373 * 59.99565 * 10 9 7 30 30 H 1.09006 * 109.47015 * 300.00021 * 10 9 7 31 31 H 1.09002 * 109.67438 * 16.89269 * 14 13 11 32 32 H 1.09000 * 109.67499 * 256.36575 * 14 13 11 33 33 H 1.08998 * 109.48468 * 162.29830 * 15 14 13 34 34 H 1.09003 * 109.48363 * 42.24532 * 15 14 13 35 35 H 1.09001 * 109.42426 * 192.96332 * 16 15 14 36 36 H 1.08995 * 109.42714 * 312.81243 * 16 15 14 37 37 H 1.09000 * 109.22300 * 164.67978 * 17 16 15 38 38 H 1.08998 * 109.22567 * 284.03935 * 17 16 15 39 39 H 1.09003 * 109.48003 * 6.24483 * 18 17 16 40 40 H 1.08998 * 109.48134 * 126.26640 * 18 17 16 41 41 H 1.00896 * 111.00093 * 278.94851 * 21 19 18 42 42 H 1.08996 * 109.47120 * 299.99797 * 22 21 19 43 43 H 1.08998 * 109.46851 * 60.00077 * 22 21 19 44 44 H 1.09005 * 112.84644 * 43.80768 * 23 22 21 45 45 H 1.08998 * 113.61276 * 334.56804 * 24 23 22 46 46 H 1.08994 * 113.61433 * 105.46710 * 24 23 22 47 47 H 1.08998 * 113.61638 * 270.88262 * 25 24 23 48 48 H 1.09005 * 113.61149 * 139.98140 * 25 24 23 49 49 H 1.08999 * 113.61164 * 220.01916 * 26 25 24 50 50 H 1.08998 * 113.61136 * 89.11731 * 26 25 24 51 51 H 1.09006 * 109.53518 * 171.77397 * 27 13 11 52 52 H 1.08994 * 109.59771 * 51.58539 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3028 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8440 -6.3431 0.0022 14 6 4.2791 -6.1131 0.0037 15 6 4.9244 -7.0817 1.0038 16 6 4.7074 -6.5623 2.4252 17 6 3.2355 -6.7594 2.8314 18 6 2.7449 -8.1448 2.4266 19 6 1.6660 -8.0074 1.3392 20 1 0.9959 -7.1858 1.5927 21 7 0.8995 -9.2572 1.2475 22 6 -0.4437 -9.0125 0.7055 23 6 -1.2097 -10.3344 0.6246 24 6 -0.9803 -11.1000 -0.6892 25 6 -2.4787 -11.4446 -0.6584 26 6 -2.6737 -10.1720 0.1827 27 6 2.3374 -7.7226 0.0024 28 1 -0.4850 0.8401 0.0004 29 1 3.1237 -3.7310 0.8924 30 1 3.1251 -3.7317 -0.8875 31 1 4.4857 -5.0854 0.3025 32 1 4.6807 -6.2936 -0.9934 33 1 5.9931 -7.1539 0.8021 34 1 4.4677 -8.0663 0.9028 35 1 5.3501 -7.1110 3.1136 36 1 4.9558 -5.5018 2.4655 37 1 3.1434 -6.6474 3.9117 38 1 2.6231 -6.0038 2.3394 39 1 3.5805 -8.7272 2.0382 40 1 2.3232 -8.6494 3.2959 41 1 1.3922 -9.9439 0.6964 42 1 -0.9783 -8.3218 1.3575 43 1 -0.3599 -8.5799 -0.2915 44 1 -1.0884 -10.9491 1.5166 45 1 -0.6968 -10.4592 -1.5241 46 1 -0.3303 -11.9681 -0.5809 47 1 -2.7043 -12.3639 -0.1181 48 1 -2.9574 -11.3990 -1.6366 49 1 -3.3908 -10.2912 0.9950 50 1 -2.8531 -9.2776 -0.4139 51 1 3.1662 -8.4153 -0.1442 52 1 1.6127 -7.8460 -0.8023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479683966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:48 Heat of formation + Delta-G solvation = -19.498139 kcal Electronic energy + Delta-G solvation = -28684.235393 eV Core-core repulsion = 25003.180503 eV Total energy + Delta-G solvation = -3681.054890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50901 -39.08800 -37.53527 -35.77552 -34.03395 -32.43602 -31.67531 -29.88554 -28.18190 -26.37431 -26.21307 -25.70238 -25.41634 -23.09988 -22.31587 -21.55570 -19.99396 -19.46907 -18.93753 -17.68732 -16.73584 -16.54146 -16.15853 -15.86654 -15.07945 -14.81477 -14.77982 -14.51968 -14.47258 -14.38990 -13.95113 -13.59242 -13.26840 -13.19799 -13.04992 -12.60262 -12.56368 -12.47719 -12.30072 -11.95223 -11.90518 -11.71349 -11.54097 -11.19919 -11.07257 -11.04637 -11.02418 -10.91133 -10.76558 -10.66360 -10.54805 -10.37539 -10.33912 -10.10513 -9.81350 -9.34109 -9.07295 -8.83854 -8.23321 -8.11231 -6.50614 -6.22361 -3.92780 2.92991 3.04975 3.21449 3.25339 3.29515 3.58621 4.04960 4.19586 4.47115 4.51643 4.58190 4.65143 4.70472 4.76466 4.83271 4.91566 4.95728 4.99833 5.12831 5.24896 5.28873 5.30069 5.38528 5.45899 5.49354 5.53325 5.56263 5.60153 5.62793 5.66374 5.71070 5.73297 5.75643 5.79189 5.83290 5.86809 5.91921 5.96683 6.01562 6.09245 6.13293 6.14907 6.22667 6.29790 6.37183 6.46074 6.63756 7.03770 7.35169 7.57843 7.59672 8.34370 8.56488 9.23016 10.85022 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002997 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.569455 B = 9339.479763 C =11114.012124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.611 5.611 14 C 0.107 3.893 15 C -0.147 4.147 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.107 4.107 19 C 0.067 3.933 20 H 0.096 0.904 21 N -0.678 5.678 22 C 0.068 3.932 23 C -0.107 4.107 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.137 4.137 27 C 0.095 3.905 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.333 0.667 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -22.459 1.516 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.301 4.301 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.347 5.347 14 C -0.017 4.017 15 C -0.184 4.184 16 C -0.153 4.153 17 C -0.162 4.162 18 C -0.145 4.145 19 C -0.044 4.044 20 H 0.114 0.886 21 N -0.307 5.307 22 C -0.061 4.061 23 C -0.126 4.126 24 C -0.178 4.178 25 C -0.180 4.180 26 C -0.175 4.175 27 C -0.029 4.029 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.097 0.903 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.570 -22.615 2.176 23.174 hybrid contribution 2.313 1.522 -1.029 2.954 sum 6.883 -21.092 1.146 22.217 Atomic orbital electron populations 1.70016 1.05938 1.27433 1.46868 1.24985 0.95020 0.99000 0.94555 0.86180 0.79430 0.81627 0.78345 1.20284 1.20741 1.19698 1.22851 0.94852 0.91654 1.58922 0.91009 1.85382 1.04968 0.96312 1.96685 1.23569 1.06442 0.95545 1.04565 1.20276 0.86241 0.86106 0.75217 1.90686 1.15135 1.85339 1.47731 1.47731 1.06319 1.05362 1.75285 1.21619 0.80334 1.00935 0.98837 1.22313 1.00618 1.00156 0.95338 1.21724 0.96661 1.01215 0.95730 1.21700 0.96151 0.97601 1.00708 1.21733 0.97237 0.96972 0.98566 1.22201 0.95390 0.92680 0.94135 0.88576 1.60673 1.03401 1.10181 1.56417 1.22000 0.89195 0.96326 0.98551 1.22589 0.95372 0.96713 0.97890 1.23009 0.96655 1.00193 0.97989 1.22788 0.96771 0.98098 1.00333 1.22920 0.96436 0.98307 0.99813 1.22130 0.98691 0.83434 0.98669 0.92196 0.89357 0.89483 0.89407 0.92135 0.91140 0.90104 0.92233 0.91757 0.92346 0.91385 0.91765 0.91310 0.84953 0.90679 0.94597 0.88619 0.90360 0.91727 0.90396 0.91664 0.91499 0.89922 0.90254 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.04 4.54 36.01 0.16 -2.88 16 11 C 0.53 9.87 6.17 -10.99 -0.07 9.81 16 12 O -0.51 -11.32 14.61 5.55 0.08 -11.24 16 13 N -0.61 -8.32 1.69 -174.39 -0.29 -8.61 16 14 C 0.11 1.15 5.88 -4.43 -0.03 1.12 16 15 C -0.15 -1.27 5.45 -26.56 -0.14 -1.41 16 16 C -0.12 -1.12 5.75 -26.30 -0.15 -1.27 16 17 C -0.12 -1.44 5.40 -26.52 -0.14 -1.58 16 18 C -0.11 -1.14 5.11 -26.60 -0.14 -1.28 16 19 C 0.07 0.81 2.09 -67.66 -0.14 0.67 16 20 H 0.10 1.57 5.85 -51.93 -0.30 1.26 16 21 N -0.68 -7.26 6.26 -106.67 -0.67 -7.93 16 22 C 0.07 0.79 5.31 -3.82 -0.02 0.77 16 23 C -0.11 -1.01 3.90 -89.81 -0.35 -1.36 16 24 C -0.14 -1.18 7.63 -25.92 -0.20 -1.38 16 25 C -0.14 -1.16 8.08 -25.92 -0.21 -1.36 16 26 C -0.14 -1.27 7.64 -25.92 -0.20 -1.47 16 27 C 0.10 1.13 4.47 -4.16 -0.02 1.11 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.09 1.67 7.51 -51.92 -0.39 1.28 16 30 H 0.09 1.65 8.09 -51.91 -0.42 1.23 16 31 H 0.09 1.01 5.76 -51.93 -0.30 0.71 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.67 3.35 -51.93 -0.17 0.50 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.66 7.87 -51.93 -0.41 0.26 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.00 5.38 -51.93 -0.28 0.73 16 39 H 0.06 0.59 5.47 -51.93 -0.28 0.30 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.33 3.02 8.47 -39.29 -0.33 2.69 16 42 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.04 0.47 7.03 -51.93 -0.36 0.10 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 51 H 0.08 0.73 6.07 -51.93 -0.32 0.41 16 52 H 0.06 0.86 7.22 -51.93 -0.38 0.49 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -32.18 399.30 -11.78 -43.95 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.97 Total: 4.07 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.44 Total: -13.39 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.23 Total: -41.93 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.18 -11.78 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479683966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.453 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds