Wall clock time and date at job start Sat Apr 11 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47051 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47367 * 29.99814 * 3 2 1 6 6 H 1.48499 * 109.47271 * 149.99958 * 3 2 1 7 7 C 1.38799 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99893 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00039 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47165 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99913 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00158 * 179.97438 * 11 10 9 14 14 C 1.45338 * 120.36466 * 0.02562 * 13 11 10 15 15 C 1.53447 * 108.42182 * 136.62855 * 14 13 11 16 16 C 1.52876 * 109.37994 * 282.27432 * 15 14 13 17 17 C 1.53957 * 109.72641 * 72.88960 * 16 15 14 18 18 C 1.52445 * 110.72869 * 44.36088 * 17 16 15 19 19 C 1.53803 * 109.41051 * 246.26672 * 18 17 16 20 20 H 1.09005 * 109.51939 * 317.93301 * 19 18 17 21 21 N 1.46897 * 109.52045 * 197.74412 * 19 18 17 22 22 C 1.46904 * 110.99897 * 154.99676 * 21 19 18 23 23 C 1.52999 * 109.47107 * 179.97438 * 22 21 19 24 24 C 1.53781 * 113.61834 * 272.49920 * 23 22 21 25 25 C 1.53781 * 87.08017 * 220.02101 * 24 23 22 26 26 C 1.53784 * 87.08359 * 25.43290 * 25 24 23 27 27 C 1.46959 * 120.36442 * 179.97438 * 13 11 10 28 28 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47373 * 59.99565 * 10 9 7 30 30 H 1.09006 * 109.47015 * 300.00021 * 10 9 7 31 31 H 1.09002 * 109.67438 * 16.89269 * 14 13 11 32 32 H 1.09000 * 109.67499 * 256.36575 * 14 13 11 33 33 H 1.08998 * 109.48468 * 162.29830 * 15 14 13 34 34 H 1.09003 * 109.48363 * 42.24532 * 15 14 13 35 35 H 1.09001 * 109.42426 * 192.96332 * 16 15 14 36 36 H 1.08995 * 109.42714 * 312.81243 * 16 15 14 37 37 H 1.09000 * 109.22300 * 164.67978 * 17 16 15 38 38 H 1.08998 * 109.22567 * 284.03935 * 17 16 15 39 39 H 1.09003 * 109.48003 * 6.24483 * 18 17 16 40 40 H 1.08998 * 109.48134 * 126.26640 * 18 17 16 41 41 H 1.00896 * 111.00093 * 278.94851 * 21 19 18 42 42 H 1.08996 * 109.47120 * 299.99797 * 22 21 19 43 43 H 1.08998 * 109.46851 * 60.00077 * 22 21 19 44 44 H 1.09005 * 112.84644 * 43.80768 * 23 22 21 45 45 H 1.08998 * 113.61276 * 334.56804 * 24 23 22 46 46 H 1.08994 * 113.61433 * 105.46710 * 24 23 22 47 47 H 1.08998 * 113.61638 * 270.88262 * 25 24 23 48 48 H 1.09005 * 113.61149 * 139.98140 * 25 24 23 49 49 H 1.08999 * 113.61164 * 220.01916 * 26 25 24 50 50 H 1.08998 * 113.61136 * 89.11731 * 26 25 24 51 51 H 1.09006 * 109.53518 * 171.77397 * 27 13 11 52 52 H 1.08994 * 109.59771 * 51.58539 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3028 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8440 -6.3431 0.0022 14 6 4.2791 -6.1131 0.0037 15 6 4.9244 -7.0817 1.0038 16 6 4.7074 -6.5623 2.4252 17 6 3.2355 -6.7594 2.8314 18 6 2.7449 -8.1448 2.4266 19 6 1.6660 -8.0074 1.3392 20 1 0.9959 -7.1858 1.5927 21 7 0.8995 -9.2572 1.2475 22 6 -0.4437 -9.0125 0.7055 23 6 -1.2097 -10.3344 0.6246 24 6 -0.9803 -11.1000 -0.6892 25 6 -2.4787 -11.4446 -0.6584 26 6 -2.6737 -10.1720 0.1827 27 6 2.3374 -7.7226 0.0024 28 1 -0.4850 0.8401 0.0004 29 1 3.1237 -3.7310 0.8924 30 1 3.1251 -3.7317 -0.8875 31 1 4.4857 -5.0854 0.3025 32 1 4.6807 -6.2936 -0.9934 33 1 5.9931 -7.1539 0.8021 34 1 4.4677 -8.0663 0.9028 35 1 5.3501 -7.1110 3.1136 36 1 4.9558 -5.5018 2.4655 37 1 3.1434 -6.6474 3.9117 38 1 2.6231 -6.0038 2.3394 39 1 3.5805 -8.7272 2.0382 40 1 2.3232 -8.6494 3.2959 41 1 1.3922 -9.9439 0.6964 42 1 -0.9783 -8.3218 1.3575 43 1 -0.3599 -8.5799 -0.2915 44 1 -1.0884 -10.9491 1.5166 45 1 -0.6968 -10.4592 -1.5241 46 1 -0.3303 -11.9681 -0.5809 47 1 -2.7043 -12.3639 -0.1181 48 1 -2.9574 -11.3990 -1.6366 49 1 -3.3908 -10.2912 0.9950 50 1 -2.8531 -9.2776 -0.4139 51 1 3.1662 -8.4153 -0.1442 52 1 1.6127 -7.8460 -0.8023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479683966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:48 Heat of formation + Delta-G solvation = -38.584038 kcal Electronic energy + Delta-G solvation = -28685.063020 eV Core-core repulsion = 25003.180503 eV Total energy + Delta-G solvation = -3681.882517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67310 -39.91470 -38.76933 -36.73163 -35.12224 -34.60719 -32.60739 -31.33535 -29.20157 -27.78889 -27.25717 -27.07081 -26.43830 -24.12631 -23.16515 -22.53811 -21.03375 -20.34072 -20.22025 -19.41247 -18.04434 -17.73485 -17.27048 -16.90383 -16.72315 -16.08178 -16.03670 -15.70446 -15.50805 -15.46720 -15.29266 -14.64809 -14.51874 -14.31160 -14.22504 -14.08501 -13.59501 -13.35723 -13.30843 -13.22925 -13.12805 -12.91242 -12.77647 -12.64118 -12.58607 -12.40590 -12.04352 -11.94130 -11.78567 -11.74404 -11.46348 -11.40262 -11.28012 -11.16379 -11.08853 -10.93393 -10.77973 -10.28918 -9.91077 -9.17627 -8.69539 -8.36761 -6.15189 1.23592 1.40385 1.43870 1.54499 1.57977 2.09557 2.25322 2.97289 3.10335 3.25595 3.59186 3.68780 3.79757 3.83340 3.89826 3.90323 3.98610 4.02809 4.03715 4.11393 4.20208 4.31401 4.35355 4.40268 4.42898 4.53123 4.61104 4.61824 4.69414 4.77640 4.77729 4.85102 4.87145 4.90925 4.99110 5.03437 5.08097 5.08826 5.12569 5.14372 5.23862 5.35665 5.38849 5.39275 5.40917 5.55771 5.56957 5.65034 6.02283 6.17289 6.32313 6.53426 7.04264 7.16043 8.72481 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002997 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.569455 B = 9339.479763 C =11114.012124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.081 0.919 9 S -0.151 6.151 10 C -0.122 4.122 11 C 0.532 3.468 12 O -0.561 6.561 13 N -0.594 5.594 14 C 0.094 3.906 15 C -0.136 4.136 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.097 4.097 19 C 0.073 3.927 20 H 0.047 0.953 21 N -0.668 5.668 22 C 0.076 3.924 23 C -0.102 4.102 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.146 4.146 27 C 0.097 3.903 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.349 0.651 42 H 0.042 0.958 43 H 0.016 0.984 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.122 0.878 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.381 -24.504 1.342 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.099 0.901 9 S 0.077 5.923 10 C -0.273 4.273 11 C 0.319 3.681 12 O -0.440 6.440 13 N -0.328 5.328 14 C -0.028 4.028 15 C -0.174 4.174 16 C -0.151 4.151 17 C -0.163 4.163 18 C -0.134 4.134 19 C -0.038 4.038 20 H 0.065 0.935 21 N -0.299 5.299 22 C -0.053 4.053 23 C -0.121 4.121 24 C -0.171 4.171 25 C -0.172 4.172 26 C -0.184 4.184 27 C -0.027 4.027 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.121 0.879 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.140 0.860 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.269 -24.704 1.998 26.128 hybrid contribution 1.199 2.072 -0.942 2.573 sum 9.467 -22.632 1.056 24.555 Atomic orbital electron populations 1.70187 1.07988 1.28603 1.47985 1.26136 0.95973 1.03326 0.93717 0.84955 0.78220 0.75976 0.78850 1.19222 1.20261 1.18147 1.23172 0.95238 0.91950 1.58908 0.90066 1.85572 1.10549 0.99229 1.96993 1.23365 1.03301 0.94866 1.05814 1.20015 0.86067 0.86499 0.75487 1.90675 1.17164 1.85822 1.50310 1.47670 1.07226 1.04928 1.72941 1.21985 0.78198 1.01526 1.01115 1.22281 1.02244 0.99408 0.93427 1.21733 0.95030 1.01194 0.97163 1.21700 0.97367 0.97099 1.00176 1.21663 0.97346 0.96607 0.97816 1.22021 0.95069 0.91734 0.94966 0.93495 1.60653 1.02893 1.09796 1.56529 1.21849 0.89910 0.97026 0.96550 1.22557 0.95030 0.95493 0.99002 1.22957 0.97295 1.00285 0.96606 1.22785 0.96419 0.97694 1.00310 1.22960 0.96577 0.98679 1.00189 1.22283 0.99760 0.82833 0.97826 0.91997 0.88051 0.87926 0.90224 0.89716 0.88065 0.89143 0.90070 0.92683 0.92742 0.95188 0.88837 0.91648 0.83177 0.93911 0.96557 0.87946 0.91141 0.89952 0.88895 0.91360 0.91182 0.91578 0.86034 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.54 -31.55 9.50 67.95 0.65 -30.90 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.12 -5.06 4.54 71.24 0.32 -4.74 16 11 C 0.53 20.42 6.17 87.66 0.54 20.96 16 12 O -0.56 -26.59 14.61 -3.04 -0.04 -26.63 16 13 N -0.59 -15.73 1.69 -824.05 -1.39 -17.12 16 14 C 0.09 1.76 5.88 86.75 0.51 2.27 16 15 C -0.14 -1.75 5.45 30.70 0.17 -1.58 16 16 C -0.11 -1.88 5.75 30.88 0.18 -1.70 16 17 C -0.13 -2.83 5.40 30.73 0.17 -2.67 16 18 C -0.10 -1.89 5.11 30.68 0.16 -1.74 16 19 C 0.07 1.79 2.09 44.95 0.09 1.88 16 20 H 0.05 1.66 5.85 -2.38 -0.01 1.65 16 21 N -0.67 -14.12 6.26 -491.40 -3.08 -17.19 16 22 C 0.08 1.89 5.31 86.30 0.46 2.35 16 23 C -0.10 -1.92 3.90 -10.27 -0.04 -1.96 16 24 C -0.13 -2.07 7.63 31.12 0.24 -1.83 16 25 C -0.13 -2.02 8.08 31.12 0.25 -1.77 16 26 C -0.15 -2.79 7.64 31.12 0.24 -2.56 16 27 C 0.10 2.17 4.47 86.05 0.38 2.56 16 28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.10 3.89 7.51 -2.40 -0.02 3.87 16 30 H 0.10 3.88 8.09 -2.39 -0.02 3.87 16 31 H 0.08 1.65 5.76 -2.39 -0.01 1.64 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 1.01 3.35 -2.39 -0.01 1.00 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.03 7.87 -2.39 -0.02 1.01 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.03 0.91 5.38 -2.39 -0.01 0.90 16 39 H 0.09 1.30 5.47 -2.39 -0.01 1.29 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.35 5.59 8.47 -89.70 -0.76 4.83 16 42 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 43 H 0.02 0.46 7.03 -2.39 -0.02 0.45 16 44 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.07 1.21 7.89 -2.39 -0.02 1.20 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 51 H 0.12 1.74 6.07 -2.38 -0.01 1.72 16 52 H 0.05 1.26 7.22 -2.39 -0.02 1.24 16 Total: -1.00 -76.10 399.30 1.57 -74.53 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.15 Total: 26.70 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.78 Total: -20.21 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.18 Total: -90.69 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.04 Total: -26.63 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -76.10 1.57 -74.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479683966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.947 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds