Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 120.00163 * 2 1 4 4 H 1.48505 * 109.47125 * 269.99925 * 3 2 1 5 5 H 1.48499 * 109.47140 * 29.99534 * 3 2 1 6 6 H 1.48500 * 109.47238 * 149.99881 * 3 2 1 7 7 C 1.38797 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99539 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00493 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00145 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46981 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00144 * 5.06580 * 11 10 9 13 13 N 1.34772 * 119.99866 * 185.06708 * 11 10 9 14 14 C 1.46969 * 120.36243 * 175.05381 * 13 11 10 15 15 C 1.52330 * 109.10821 * 68.38641 * 14 13 11 16 16 C 1.53795 * 109.16032 * 72.70077 * 15 14 13 17 17 C 1.52452 * 109.40771 * 282.16221 * 16 15 14 18 18 C 1.53946 * 110.71937 * 113.73624 * 17 16 15 19 19 C 1.52880 * 109.73362 * 315.61270 * 18 17 16 20 20 H 1.09004 * 109.48154 * 47.11190 * 19 18 17 21 21 N 1.46904 * 109.48335 * 167.14382 * 19 18 17 22 22 C 1.46897 * 110.99778 * 204.97164 * 21 19 18 23 23 C 1.52999 * 109.47068 * 179.97438 * 22 21 19 24 24 C 1.53776 * 113.61405 * 274.13539 * 23 22 21 25 25 C 1.53955 * 87.02040 * 220.04491 * 24 23 22 26 26 C 1.53782 * 87.11225 * 25.36217 * 25 24 23 27 27 C 1.45337 * 120.36708 * 355.08132 * 13 11 10 28 28 H 0.96998 * 119.99556 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47239 * 60.00364 * 10 9 7 30 30 H 1.08999 * 109.47101 * 300.00184 * 10 9 7 31 31 H 1.09001 * 109.53048 * 188.27567 * 14 13 11 32 32 H 1.09001 * 109.53213 * 308.49161 * 14 13 11 33 33 H 1.09007 * 109.52337 * 192.60616 * 15 14 13 34 34 H 1.09002 * 109.52509 * 312.79077 * 15 14 13 35 35 H 1.08997 * 109.48567 * 42.14016 * 16 15 14 36 36 H 1.09003 * 109.48433 * 162.18412 * 16 15 14 37 37 H 1.08998 * 109.22535 * 234.05612 * 17 16 15 38 38 H 1.09000 * 109.22122 * 353.44926 * 17 16 15 39 39 H 1.09000 * 109.41263 * 195.53808 * 18 17 16 40 40 H 1.08999 * 109.43647 * 75.70062 * 18 17 16 41 41 H 1.00895 * 110.99748 * 81.01408 * 21 19 18 42 42 H 1.09001 * 109.46984 * 299.99383 * 22 21 19 43 43 H 1.08999 * 109.47664 * 60.00137 * 22 21 19 44 44 H 1.09004 * 112.84862 * 45.32951 * 23 22 21 45 45 H 1.08999 * 113.61642 * 334.56410 * 24 23 22 46 46 H 1.09001 * 113.61620 * 105.46967 * 24 23 22 47 47 H 1.08996 * 113.54076 * 270.81374 * 25 24 23 48 48 H 1.09001 * 113.74288 * 139.93987 * 25 24 23 49 49 H 1.08993 * 113.61762 * 220.09111 * 26 25 24 50 50 H 1.08993 * 113.61303 * 89.18211 * 26 25 24 51 51 H 1.08994 * 109.68260 * 103.59339 * 27 13 11 52 52 H 1.08996 * 109.70598 * 343.06298 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7949 -5.5037 -0.0943 13 7 2.8397 -6.3415 0.1018 14 6 2.3275 -7.7148 0.2111 15 6 1.6787 -8.1115 -1.1087 16 6 2.7761 -8.3445 -2.1607 17 6 3.2795 -7.0002 -2.6740 18 6 4.7446 -6.7730 -2.2597 19 6 4.9342 -7.1685 -0.7952 20 1 4.4720 -8.1397 -0.6181 21 7 6.3692 -7.2458 -0.4903 22 6 6.6193 -8.1504 0.6397 23 6 8.1212 -8.2054 0.9263 24 6 8.8736 -9.2405 0.0736 25 6 9.6860 -9.5730 1.3383 26 6 8.4839 -9.0627 2.1504 27 6 4.2755 -6.1161 0.1066 28 1 -0.4849 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8905 31 1 3.1509 -8.3943 0.4313 32 1 1.5882 -7.7654 1.0105 33 1 1.1050 -9.0282 -0.9716 34 1 1.0165 -7.3131 -1.4437 35 1 3.6022 -8.8935 -1.7089 36 1 2.3674 -8.9206 -2.9910 37 1 3.2068 -6.9811 -3.7614 38 1 2.6619 -6.2036 -2.2591 39 1 4.9980 -5.7205 -2.3868 40 1 5.3972 -7.3805 -2.8867 41 1 6.7506 -6.3291 -0.3111 42 1 6.0940 -7.7839 1.5216 43 1 6.2603 -9.1494 0.3919 44 1 8.5878 -7.2202 0.9295 45 1 8.2455 -10.0622 -0.2705 46 1 9.4690 -8.7984 -0.7252 47 1 10.5815 -8.9624 1.4535 48 1 9.8801 -10.6377 1.4679 49 1 8.7651 -8.4773 3.0257 50 1 7.7491 -9.8357 2.3751 51 1 4.6587 -6.2117 1.1224 52 1 4.4921 -5.1184 -0.2751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479683967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -37.608360 kcal Electronic energy + Delta-G solvation = -28541.019476 eV Core-core repulsion = 24859.179267 eV Total energy + Delta-G solvation = -3681.840208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67085 -39.86127 -38.86052 -36.19954 -35.34794 -34.60439 -33.09841 -31.05677 -29.09114 -27.72104 -27.42249 -26.86909 -26.32306 -24.11445 -23.05308 -22.89386 -20.99347 -20.39614 -20.02821 -19.40739 -17.98625 -17.63557 -17.30698 -16.90057 -16.54995 -16.18740 -16.03586 -15.77197 -15.40183 -15.32474 -15.05060 -14.75674 -14.55035 -14.49524 -14.26759 -13.95209 -13.72054 -13.40966 -13.22654 -13.20398 -12.96654 -12.90186 -12.72786 -12.63042 -12.51128 -12.42683 -12.20110 -11.98681 -11.74678 -11.63298 -11.45683 -11.39956 -11.26066 -11.16204 -11.06404 -10.92551 -10.68691 -10.29437 -9.80376 -9.16862 -8.69343 -8.36552 -6.14932 1.23419 1.40732 1.43777 1.54186 1.59022 2.09222 2.25558 2.97504 3.09271 3.28093 3.53579 3.73889 3.81013 3.88033 3.91242 3.92847 3.99815 4.04348 4.10497 4.17968 4.18664 4.22929 4.36136 4.42908 4.48288 4.52385 4.58712 4.62357 4.67698 4.71887 4.79329 4.86339 4.94802 4.95976 4.97931 5.08781 5.09628 5.14665 5.16248 5.23410 5.25019 5.35740 5.38987 5.39307 5.46366 5.48617 5.68503 5.69919 6.07034 6.17554 6.32658 6.46206 7.04535 7.16046 8.72684 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.002807 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.115215 B = 9972.470969 C =11480.168442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.081 0.919 9 S -0.148 6.148 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.557 6.557 13 N -0.594 5.594 14 C 0.118 3.882 15 C -0.141 4.141 16 C -0.112 4.112 17 C -0.124 4.124 18 C -0.098 4.098 19 C 0.076 3.924 20 H 0.104 0.896 21 N -0.675 5.675 22 C 0.068 3.932 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.136 4.136 27 C 0.075 3.925 28 H 0.271 0.729 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.345 0.655 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.934 -22.104 0.415 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.099 0.901 9 S 0.079 5.921 10 C -0.275 4.275 11 C 0.322 3.678 12 O -0.435 6.435 13 N -0.328 5.328 14 C -0.003 4.003 15 C -0.179 4.179 16 C -0.149 4.149 17 C -0.162 4.162 18 C -0.136 4.136 19 C -0.034 4.034 20 H 0.122 0.878 21 N -0.306 5.306 22 C -0.061 4.061 23 C -0.125 4.125 24 C -0.163 4.163 25 C -0.183 4.183 26 C -0.174 4.174 27 C -0.050 4.050 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.163 0.837 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.103 0.897 51 H 0.092 0.908 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.174 -22.816 -0.100 29.170 hybrid contribution 0.876 2.185 0.715 2.461 sum 19.050 -20.631 0.615 28.088 Atomic orbital electron populations 1.70185 1.07958 1.28621 1.47949 1.26131 0.95981 1.03304 0.93713 0.84961 0.78232 0.76008 0.78835 1.19289 1.20206 1.18149 1.23166 0.95217 0.91977 1.58944 0.90129 1.85546 1.10398 0.99152 1.96982 1.23370 1.03373 0.95095 1.05648 1.19953 0.85982 0.86312 0.75528 1.90670 1.17336 1.85719 1.49801 1.47616 1.06424 1.06080 1.72690 1.21637 0.99437 0.81500 0.97742 1.22050 0.98506 1.01657 0.95683 1.21730 0.98105 0.96716 0.98370 1.21720 0.96484 0.97715 1.00294 1.21629 0.95355 1.01247 0.95357 1.22251 0.87938 0.98868 0.94329 0.87808 1.60661 1.12241 1.15878 1.41772 1.22056 0.95556 0.97185 0.91275 1.22508 0.94446 0.98731 0.96814 1.22875 0.98490 0.98594 0.96386 1.22875 0.97276 1.01375 0.96764 1.22931 0.98340 0.99491 0.96675 1.22611 0.79573 1.01770 1.01076 0.91972 0.88184 0.88164 0.86937 0.92415 0.89637 0.93710 0.89536 0.91426 0.92324 0.94779 0.92900 0.90193 0.83676 0.95013 0.90609 0.89503 0.90192 0.92057 0.90284 0.91244 0.91598 0.89749 0.90790 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -31.44 9.50 67.95 0.65 -30.80 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -8.35 20.58 -56.49 -1.16 -9.51 16 10 C -0.12 -5.10 4.56 71.24 0.32 -4.77 16 11 C 0.53 20.34 6.23 87.66 0.55 20.89 16 12 O -0.56 -26.02 14.44 -3.03 -0.04 -26.06 16 13 N -0.59 -15.73 1.68 -823.95 -1.39 -17.11 16 14 C 0.12 2.60 5.20 86.07 0.45 3.05 16 15 C -0.14 -3.20 5.54 30.64 0.17 -3.03 16 16 C -0.11 -2.05 5.49 30.68 0.17 -1.89 16 17 C -0.12 -2.75 5.40 30.73 0.17 -2.58 16 18 C -0.10 -1.79 5.35 30.87 0.17 -1.62 16 19 C 0.08 1.18 1.99 45.02 0.09 1.27 16 20 H 0.10 1.48 3.01 -2.38 -0.01 1.47 16 21 N -0.68 -8.80 6.25 -491.00 -3.07 -11.87 16 22 C 0.07 0.77 5.29 86.30 0.46 1.23 16 23 C -0.11 -1.15 3.89 -10.27 -0.04 -1.19 16 24 C -0.13 -1.38 7.65 31.18 0.24 -1.14 16 25 C -0.15 -1.44 8.09 31.18 0.25 -1.19 16 26 C -0.14 -1.36 7.65 31.12 0.24 -1.12 16 27 C 0.07 1.48 5.12 86.75 0.44 1.92 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.10 3.78 8.04 -2.40 -0.02 3.76 16 30 H 0.10 3.85 7.59 -2.40 -0.02 3.83 16 31 H 0.11 1.65 6.07 -2.39 -0.01 1.64 16 32 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 1.43 6.03 -2.39 -0.01 1.42 16 35 H 0.09 1.24 5.47 -2.39 -0.01 1.22 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.03 1.00 5.38 -2.39 -0.01 0.99 16 39 H 0.05 1.07 7.87 -2.39 -0.02 1.05 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.34 4.37 8.48 -89.70 -0.76 3.61 16 42 H 0.03 0.38 7.33 -2.39 -0.02 0.36 16 43 H 0.08 0.83 7.79 -2.39 -0.02 0.81 16 44 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.08 0.87 7.92 -2.39 -0.02 0.86 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 50 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 51 H 0.07 1.29 7.26 -2.39 -0.02 1.27 16 52 H 0.08 1.75 5.89 -2.39 -0.01 1.74 16 Total: -1.00 -73.36 399.23 1.58 -71.78 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.15 Total: 22.73 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 4.78 Total: -19.74 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -4.17 Total: -85.03 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -73.36 1.58 -71.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479683967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.170 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds