Wall clock time and date at job start Sat Apr 11 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47148 * 2 1 4 4 C 1.30999 * 119.99906 * 126.33429 * 3 2 1 5 5 C 1.50701 * 119.99931 * 7.53966 * 4 3 2 6 6 C 1.53007 * 109.46943 * 127.61874 * 5 4 3 7 7 N 1.46897 * 109.46880 * 180.02562 * 6 5 4 8 8 C 1.46846 * 110.99889 * 294.20563 * 7 6 5 9 9 C 1.53039 * 109.52484 * 174.16237 * 8 7 6 10 10 C 1.53124 * 109.27624 * 59.18136 * 9 8 7 11 11 C 1.53116 * 109.16087 * 302.34738 * 10 9 8 12 12 H 1.09003 * 109.53820 * 297.69290 * 11 10 9 13 13 C 1.53000 * 109.50299 * 177.59509 * 11 10 9 14 14 N 1.46499 * 109.47044 * 65.19829 * 13 11 10 15 15 C 1.34778 * 119.99429 * 179.72478 * 14 13 11 16 16 O 1.21274 * 120.00509 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99363 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47076 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00333 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99556 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00119 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99949 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00159 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47303 * 89.99753 * 23 21 19 25 25 H 1.48501 * 109.47188 * 210.00309 * 23 21 19 26 26 H 1.48503 * 109.46948 * 330.00175 * 23 21 19 27 27 C 1.46847 * 110.99796 * 170.00221 * 7 6 5 28 28 H 1.08996 * 109.46994 * 300.00048 * 1 2 3 29 29 H 1.09001 * 109.47069 * 59.99427 * 1 2 3 30 30 H 1.08996 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47217 * 240.00644 * 2 1 3 32 32 H 1.08992 * 109.47055 * 120.00328 * 2 1 3 33 33 H 1.08002 * 120.00091 * 306.33837 * 3 2 1 34 34 H 1.08007 * 120.00150 * 187.54440 * 4 3 2 35 35 H 1.08994 * 109.47003 * 7.62079 * 5 4 3 36 36 H 1.08997 * 109.47430 * 247.61570 * 5 4 3 37 37 H 1.08999 * 109.46872 * 59.99855 * 6 5 4 38 38 H 1.08997 * 109.46809 * 300.00076 * 6 5 4 39 39 H 1.08997 * 109.46628 * 294.18119 * 8 7 6 40 40 H 1.09006 * 109.46342 * 54.16035 * 8 7 6 41 41 H 1.08997 * 109.50602 * 179.12048 * 9 8 7 42 42 H 1.09006 * 109.50299 * 299.20442 * 9 8 7 43 43 H 1.08997 * 109.52124 * 182.44057 * 10 9 8 44 44 H 1.09004 * 109.52117 * 62.24964 * 10 9 8 45 45 H 1.08998 * 109.46938 * 305.19248 * 13 11 10 46 46 H 1.09004 * 109.46797 * 185.19937 * 13 11 10 47 47 H 0.96996 * 120.00126 * 0.02562 * 14 13 11 48 48 H 1.09001 * 109.47295 * 299.99898 * 17 15 14 49 49 H 1.08998 * 109.47614 * 59.99718 * 17 15 14 50 50 H 0.96998 * 120.00425 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.46153 * 65.82068 * 27 7 6 52 52 H 1.09000 * 109.46354 * 305.85502 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8844 1.8143 0.9139 5 6 3.4925 0.8104 1.8593 6 6 5.0162 0.9478 1.8381 7 7 5.6089 -0.0312 2.7591 8 6 5.2452 0.2677 4.1501 9 6 5.7559 -0.8490 5.0635 10 6 7.2770 -0.9585 4.9262 11 6 7.6317 -1.2218 3.4601 12 1 7.2014 -2.1727 3.1461 13 6 9.1528 -1.2730 3.3039 14 7 9.6807 -2.4252 4.0386 15 6 11.0051 -2.6752 4.0385 16 8 11.7597 -1.9466 3.4299 17 6 11.5480 -3.8608 4.7939 18 16 13.3468 -3.9256 4.6030 19 6 13.7043 -5.3630 5.5573 20 1 12.9034 -5.9038 6.0396 21 6 15.0150 -5.8001 5.6892 22 7 15.2820 -6.8737 6.4025 23 14 16.4000 -4.8651 4.8545 24 1 16.9176 -3.8211 5.7751 25 1 17.4947 -5.8068 4.5083 26 1 15.8885 -4.2239 3.6165 27 6 7.0666 -0.0942 2.5932 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6899 2.1147 -0.7534 34 1 3.1511 2.8581 0.9900 35 1 3.2141 -0.1964 1.5483 36 1 3.1252 0.9934 2.8691 37 1 5.2946 1.9547 2.1490 38 1 5.3834 0.7648 0.8283 39 1 5.6954 1.2147 4.4477 40 1 4.1608 0.3386 4.2348 41 1 5.4994 -0.6191 6.0976 42 1 5.2950 -1.7939 4.7756 43 1 7.6400 -1.7811 5.5422 44 1 7.7401 -0.0268 5.2513 45 1 9.5899 -0.3571 3.7015 46 1 9.4065 -1.3680 2.2480 47 1 9.0766 -3.0106 4.5215 48 1 11.2984 -3.7638 5.8505 49 1 11.1072 -4.7762 4.3990 50 1 16.1980 -7.1790 6.4951 51 1 7.5082 0.8545 2.8982 52 1 7.3052 -0.2860 1.5471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480243624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:02 Heat of formation + Delta-G solvation = -41.154389 kcal Electronic energy + Delta-G solvation = -26282.649940 eV Core-core repulsion = 22600.655965 eV Total energy + Delta-G solvation = -3681.993976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.97643 -38.99426 -37.30544 -35.48466 -33.64753 -32.43076 -31.84184 -31.69649 -29.44547 -28.60989 -25.95520 -25.54839 -24.61728 -23.62038 -22.93113 -21.36380 -20.50647 -19.96706 -18.73669 -17.86504 -16.60826 -16.33917 -16.27715 -15.90341 -15.42742 -15.28462 -15.00194 -14.90838 -14.64801 -14.34401 -14.29484 -14.13898 -13.70795 -13.42198 -13.35587 -13.08946 -12.88358 -12.77837 -12.52727 -12.47866 -12.37733 -11.95153 -11.85973 -11.52497 -11.43212 -11.36406 -11.25613 -11.00278 -10.97736 -10.79888 -10.71601 -10.61095 -10.55388 -9.84795 -9.51035 -9.34913 -9.00616 -8.93208 -8.69646 -8.48761 -6.90579 -6.28021 -3.99607 1.77177 2.77845 3.00614 3.27564 3.34100 3.49893 3.51765 3.72656 4.32081 4.34164 4.39407 4.41295 4.53765 4.62675 4.67730 4.71482 4.75837 4.83115 4.85110 4.92323 5.00690 5.07910 5.11146 5.16310 5.18159 5.23466 5.24921 5.26991 5.35056 5.38942 5.43844 5.48303 5.56460 5.60007 5.65007 5.67869 5.71806 5.75188 5.77397 5.79386 5.83673 5.93391 6.03068 6.10660 6.26096 6.42949 6.54943 6.70999 6.71967 7.63957 7.95054 8.42555 8.52002 9.18289 10.81245 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.001505 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.599130 B =18605.259296 C =18697.462949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.097 4.097 6 C 0.062 3.938 7 N -0.538 5.538 8 C 0.052 3.948 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.095 4.095 12 H 0.087 0.913 13 C 0.127 3.873 14 N -0.735 5.735 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.065 3.935 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.399 0.601 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.037 0.963 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.277 16.684 -8.728 35.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.174 4.174 4 C -0.179 4.179 5 C -0.134 4.134 6 C -0.066 4.066 7 N -0.262 5.262 8 C -0.076 4.076 9 C -0.154 4.154 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.105 0.895 13 C 0.003 3.997 14 N -0.389 5.389 15 C 0.316 3.684 16 O -0.395 6.395 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.064 4.064 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.233 0.767 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.080 0.920 51 H 0.055 0.945 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -29.064 17.321 -9.789 35.222 hybrid contribution -0.113 -0.008 0.930 0.937 sum -29.177 17.313 -8.860 35.065 Atomic orbital electron populations 1.21693 0.95172 1.01697 1.01817 1.20841 0.96033 0.94680 1.03002 1.22829 0.98555 0.97599 0.98406 1.22748 0.98591 0.99167 0.97411 1.20870 0.94194 0.99402 0.98982 1.22011 0.94346 0.93291 0.96934 1.61869 1.10060 1.49117 1.05128 1.22169 1.00622 0.96968 0.87860 1.21586 0.95730 0.99403 0.98727 1.21671 0.95883 1.02279 0.95758 1.21400 0.94024 1.00175 0.95774 0.89466 1.21246 0.92126 0.89343 0.97033 1.45939 1.07782 1.30403 1.54796 1.20269 0.81586 0.85943 0.80616 1.90695 1.57144 1.48822 1.42887 1.23279 1.02716 0.98548 1.02928 1.84785 0.98486 1.39048 1.69293 1.22324 0.97417 1.11496 1.35673 0.89397 1.24704 0.98129 0.94325 0.94093 1.69935 1.20695 1.22697 1.38402 0.86738 0.82323 0.80482 0.82330 1.19220 1.19937 1.15924 1.21990 0.86879 0.97263 1.00222 0.92734 0.92807 0.92515 0.91271 0.90324 0.87466 0.87516 0.89583 0.91267 0.94875 0.90582 0.94959 0.90565 0.91429 0.90958 0.91344 0.91919 0.91708 0.91502 0.76659 0.88543 0.88462 0.91954 0.94485 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.90 37.16 0.37 -0.33 16 2 C -0.11 -0.58 6.04 -27.88 -0.17 -0.75 16 3 C -0.16 -0.89 9.51 -36.02 -0.34 -1.23 16 4 C -0.16 -0.93 9.51 -36.02 -0.34 -1.27 16 5 C -0.10 -0.58 5.23 -27.88 -0.15 -0.72 16 6 C 0.06 0.41 4.94 -3.82 -0.02 0.39 16 7 N -0.54 -3.98 4.66 -234.67 -1.09 -5.07 16 8 C 0.05 0.35 5.29 -3.83 -0.02 0.33 16 9 C -0.12 -0.79 6.09 -26.65 -0.16 -0.95 16 10 C -0.12 -0.91 5.13 -26.61 -0.14 -1.04 16 11 C -0.09 -0.77 2.39 -90.54 -0.22 -0.99 16 12 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 13 C 0.13 1.39 5.07 -4.04 -0.02 1.37 16 14 N -0.73 -9.24 5.31 -60.29 -0.32 -9.56 16 15 C 0.53 9.42 7.85 -10.98 -0.09 9.34 16 16 O -0.52 -11.33 15.86 5.56 0.09 -11.24 16 17 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 18 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 23 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.06 0.51 4.74 -3.83 -0.02 0.49 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.44 5.28 -51.93 -0.27 0.16 16 33 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.11 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.09 0.55 5.30 -51.93 -0.28 0.27 16 36 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 37 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 38 H 0.08 0.52 7.99 -51.93 -0.41 0.10 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.47 6.21 -51.93 -0.32 0.14 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 7.27 -51.93 -0.38 0.15 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.40 3.94 7.68 -40.82 -0.31 3.63 16 48 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 49 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 50 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 LS Contribution 419.16 15.07 6.32 6.32 Total: -1.00 -33.27 419.16 -11.31 -44.58 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -9.49 Total: -1.09 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.87 Total: -9.60 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.64 Total: -40.50 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.27 -11.31 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.426 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds