Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47148 * 2 1 4 4 C 1.30999 * 119.99906 * 126.33429 * 3 2 1 5 5 C 1.50701 * 119.99931 * 7.53966 * 4 3 2 6 6 C 1.53007 * 109.46943 * 127.61874 * 5 4 3 7 7 N 1.46897 * 109.46880 * 180.02562 * 6 5 4 8 8 C 1.46846 * 110.99889 * 294.20563 * 7 6 5 9 9 C 1.53039 * 109.52484 * 174.16237 * 8 7 6 10 10 C 1.53124 * 109.27624 * 59.18136 * 9 8 7 11 11 C 1.53116 * 109.16087 * 302.34738 * 10 9 8 12 12 H 1.09003 * 109.53820 * 297.69290 * 11 10 9 13 13 C 1.53000 * 109.50299 * 177.59509 * 11 10 9 14 14 N 1.46499 * 109.47044 * 65.19829 * 13 11 10 15 15 C 1.34778 * 119.99429 * 179.72478 * 14 13 11 16 16 O 1.21274 * 120.00509 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99363 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47076 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00333 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99556 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00119 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99949 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00159 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47303 * 89.99753 * 23 21 19 25 25 H 1.48501 * 109.47188 * 210.00309 * 23 21 19 26 26 H 1.48503 * 109.46948 * 330.00175 * 23 21 19 27 27 C 1.46847 * 110.99796 * 170.00221 * 7 6 5 28 28 H 1.08996 * 109.46994 * 300.00048 * 1 2 3 29 29 H 1.09001 * 109.47069 * 59.99427 * 1 2 3 30 30 H 1.08996 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47217 * 240.00644 * 2 1 3 32 32 H 1.08992 * 109.47055 * 120.00328 * 2 1 3 33 33 H 1.08002 * 120.00091 * 306.33837 * 3 2 1 34 34 H 1.08007 * 120.00150 * 187.54440 * 4 3 2 35 35 H 1.08994 * 109.47003 * 7.62079 * 5 4 3 36 36 H 1.08997 * 109.47430 * 247.61570 * 5 4 3 37 37 H 1.08999 * 109.46872 * 59.99855 * 6 5 4 38 38 H 1.08997 * 109.46809 * 300.00076 * 6 5 4 39 39 H 1.08997 * 109.46628 * 294.18119 * 8 7 6 40 40 H 1.09006 * 109.46342 * 54.16035 * 8 7 6 41 41 H 1.08997 * 109.50602 * 179.12048 * 9 8 7 42 42 H 1.09006 * 109.50299 * 299.20442 * 9 8 7 43 43 H 1.08997 * 109.52124 * 182.44057 * 10 9 8 44 44 H 1.09004 * 109.52117 * 62.24964 * 10 9 8 45 45 H 1.08998 * 109.46938 * 305.19248 * 13 11 10 46 46 H 1.09004 * 109.46797 * 185.19937 * 13 11 10 47 47 H 0.96996 * 120.00126 * 0.02562 * 14 13 11 48 48 H 1.09001 * 109.47295 * 299.99898 * 17 15 14 49 49 H 1.08998 * 109.47614 * 59.99718 * 17 15 14 50 50 H 0.96998 * 120.00425 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.46153 * 65.82068 * 27 7 6 52 52 H 1.09000 * 109.46354 * 305.85502 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8844 1.8143 0.9139 5 6 3.4925 0.8104 1.8593 6 6 5.0162 0.9478 1.8381 7 7 5.6089 -0.0312 2.7591 8 6 5.2452 0.2677 4.1501 9 6 5.7559 -0.8490 5.0635 10 6 7.2770 -0.9585 4.9262 11 6 7.6317 -1.2218 3.4601 12 1 7.2014 -2.1727 3.1461 13 6 9.1528 -1.2730 3.3039 14 7 9.6807 -2.4252 4.0386 15 6 11.0051 -2.6752 4.0385 16 8 11.7597 -1.9466 3.4299 17 6 11.5480 -3.8608 4.7939 18 16 13.3468 -3.9256 4.6030 19 6 13.7043 -5.3630 5.5573 20 1 12.9034 -5.9038 6.0396 21 6 15.0150 -5.8001 5.6892 22 7 15.2820 -6.8737 6.4025 23 14 16.4000 -4.8651 4.8545 24 1 16.9176 -3.8211 5.7751 25 1 17.4947 -5.8068 4.5083 26 1 15.8885 -4.2239 3.6165 27 6 7.0666 -0.0942 2.5932 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6899 2.1147 -0.7534 34 1 3.1511 2.8581 0.9900 35 1 3.2141 -0.1964 1.5483 36 1 3.1252 0.9934 2.8691 37 1 5.2946 1.9547 2.1490 38 1 5.3834 0.7648 0.8283 39 1 5.6954 1.2147 4.4477 40 1 4.1608 0.3386 4.2348 41 1 5.4994 -0.6191 6.0976 42 1 5.2950 -1.7939 4.7756 43 1 7.6400 -1.7811 5.5422 44 1 7.7401 -0.0268 5.2513 45 1 9.5899 -0.3571 3.7015 46 1 9.4065 -1.3680 2.2480 47 1 9.0766 -3.0106 4.5215 48 1 11.2984 -3.7638 5.8505 49 1 11.1072 -4.7762 4.3990 50 1 16.1980 -7.1790 6.4951 51 1 7.5082 0.8545 2.8982 52 1 7.3052 -0.2860 1.5471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480243624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -61.591646 kcal Electronic energy + Delta-G solvation = -26283.536166 eV Core-core repulsion = 22600.655965 eV Total energy + Delta-G solvation = -3682.880202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91725 -40.04004 -37.83321 -36.37119 -34.67268 -34.44943 -32.58760 -32.30896 -30.73987 -29.17228 -27.87392 -26.70213 -25.24671 -24.04015 -23.53696 -22.04982 -21.76441 -20.68151 -19.85843 -19.17809 -17.88938 -17.40388 -17.07531 -16.89662 -16.75530 -16.55940 -15.91225 -15.78652 -15.52176 -15.24068 -15.08389 -14.96261 -14.79936 -14.75581 -14.42770 -13.97270 -13.90539 -13.77189 -13.36061 -13.29413 -13.03133 -12.99017 -12.92465 -12.85930 -12.64683 -12.44528 -12.06941 -12.01539 -11.86554 -11.81082 -11.58998 -11.36990 -11.24406 -11.16712 -11.16372 -10.98916 -10.53106 -10.12683 -9.79271 -9.27567 -8.99164 -8.51132 -6.21938 0.99580 1.31685 1.33346 1.47330 1.56488 1.57481 2.21929 2.26706 2.71845 2.87278 2.93125 3.69322 3.76652 3.86993 3.91416 3.94318 4.15333 4.18533 4.22289 4.23692 4.26181 4.35647 4.43179 4.47517 4.48744 4.53255 4.54570 4.59798 4.65871 4.72021 4.76984 4.80214 4.85596 4.89965 4.99985 5.05298 5.11026 5.15347 5.18758 5.25379 5.27251 5.28644 5.38419 5.39587 5.50962 5.71158 5.82672 5.99058 6.11835 6.13466 6.15971 6.47421 6.94215 7.19945 8.61281 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.001505 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.599130 B =18605.259296 C =18697.462949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.167 4.167 5 C -0.091 4.091 6 C 0.064 3.936 7 N -0.541 5.541 8 C 0.051 3.949 9 C -0.112 4.112 10 C -0.118 4.118 11 C -0.081 4.081 12 H 0.091 0.909 13 C 0.129 3.871 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C 0.066 3.934 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.416 0.584 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.277 0.723 51 H 0.033 0.967 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.804 17.548 -9.129 37.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.178 4.178 4 C -0.185 4.185 5 C -0.128 4.128 6 C -0.064 4.064 7 N -0.266 5.266 8 C -0.077 4.077 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.100 4.100 12 H 0.110 0.890 13 C 0.005 3.995 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.262 4.262 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.253 0.747 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.086 0.914 51 H 0.051 0.949 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -30.652 18.175 -10.175 37.059 hybrid contribution 0.173 -0.258 1.068 1.113 sum -30.479 17.916 -9.107 36.509 Atomic orbital electron populations 1.21686 0.94714 1.01999 1.01880 1.20855 0.96453 0.94502 1.02868 1.22963 0.98475 0.97894 0.98459 1.22810 0.98769 0.99414 0.97512 1.20791 0.93609 0.99229 0.99127 1.22000 0.94741 0.93040 0.96580 1.61886 1.09565 1.49488 1.05625 1.22205 1.01158 0.96812 0.87485 1.21557 0.94790 0.99349 0.99308 1.21675 0.96704 1.02070 0.95138 1.21272 0.91719 1.00584 0.96435 0.89041 1.21345 0.93876 0.88043 0.96267 1.45712 1.06151 1.30658 1.53753 1.19952 0.82907 0.85021 0.80129 1.90687 1.58572 1.50128 1.44931 1.23274 0.97961 1.00390 1.04611 1.84716 1.04439 1.37185 1.68698 1.22468 0.97032 1.12480 1.35734 0.91928 1.25542 1.00470 0.95138 0.94682 1.70012 1.21687 1.24077 1.39707 0.85877 0.79750 0.79540 0.81264 1.18700 1.18301 1.16132 1.21950 0.87345 0.96846 1.00144 0.92903 0.92506 0.92117 0.91310 0.90542 0.86909 0.87065 0.89966 0.91053 0.94943 0.90886 0.95353 0.89700 0.90457 0.90940 0.91051 0.92537 0.92454 0.92085 0.74689 0.86806 0.86780 0.91371 0.94872 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 71.98 0.71 -0.51 16 2 C -0.11 -1.07 6.04 29.85 0.18 -0.89 16 3 C -0.16 -1.64 9.51 25.65 0.24 -1.40 16 4 C -0.17 -1.73 9.51 25.65 0.24 -1.49 16 5 C -0.09 -0.95 5.23 29.85 0.16 -0.79 16 6 C 0.06 0.76 4.94 86.31 0.43 1.19 16 7 N -0.54 -7.12 4.66 -896.35 -4.17 -11.29 16 8 C 0.05 0.60 5.29 86.33 0.46 1.05 16 9 C -0.11 -1.26 6.09 30.65 0.19 -1.07 16 10 C -0.12 -1.56 5.13 30.67 0.16 -1.41 16 11 C -0.08 -1.17 2.39 -10.74 -0.03 -1.19 16 12 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 13 C 0.13 2.62 5.07 86.38 0.44 3.05 16 14 N -0.71 -16.36 5.31 -463.06 -2.46 -18.82 16 15 C 0.53 18.23 7.85 87.66 0.69 18.92 16 16 O -0.56 -24.19 15.86 -3.01 -0.05 -24.24 16 17 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 18 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 19 C -0.53 -30.87 10.04 67.95 0.68 -30.19 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.77 5.50 84.86 0.47 3.23 16 22 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 23 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 24 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 27 C 0.07 0.93 4.74 86.33 0.41 1.34 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.77 5.28 -2.39 -0.01 0.76 16 33 H 0.11 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.11 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.08 0.94 5.30 -2.39 -0.01 0.93 16 36 H 0.07 0.72 6.43 -2.39 -0.02 0.70 16 37 H 0.03 0.39 8.12 -2.39 -0.02 0.37 16 38 H 0.07 0.91 7.99 -2.39 -0.02 0.89 16 39 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 0.86 6.21 -2.38 -0.01 0.85 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.07 0.91 7.27 -2.39 -0.02 0.89 16 44 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.42 7.02 7.68 -92.71 -0.71 6.31 16 48 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 49 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 50 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.08 1.12 8.01 -2.39 -0.02 1.10 16 Total: -1.00 -71.28 419.16 0.47 -70.81 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.13 Total: 15.97 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.86 Total: -13.86 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -6.33 Total: -85.67 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -71.28 0.47 -70.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.218 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds