Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47175 * 2 1 4 4 C 1.31005 * 119.99932 * 124.72247 * 3 2 1 5 5 C 1.50699 * 119.99776 * 180.27660 * 4 3 2 6 6 C 1.52999 * 109.46909 * 125.00456 * 5 4 3 7 7 N 1.46902 * 109.47122 * 179.97438 * 6 5 4 8 8 C 1.46845 * 110.99918 * 45.78929 * 7 6 5 9 9 C 1.53038 * 109.52356 * 185.84012 * 8 7 6 10 10 C 1.53117 * 109.27900 * 300.82062 * 9 8 7 11 11 C 1.53118 * 109.16103 * 57.65321 * 10 9 8 12 12 H 1.08996 * 109.53524 * 62.30797 * 11 10 9 13 13 C 1.53000 * 109.50627 * 182.40673 * 11 10 9 14 14 N 1.46500 * 109.46955 * 294.80640 * 13 11 10 15 15 C 1.34780 * 120.00056 * 180.02562 * 14 13 11 16 16 O 1.21287 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00100 * 180.02562 * 15 14 13 18 18 S 1.80995 * 109.47242 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00114 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99646 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99832 * 179.97438 * 19 18 17 22 22 N 1.31637 * 120.00376 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47147 * 59.99721 * 23 21 19 25 25 H 1.48497 * 109.47427 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46914 * 299.99835 * 23 21 19 27 27 C 1.46848 * 110.99962 * 169.99664 * 7 6 5 28 28 H 1.09002 * 109.47207 * 299.99942 * 1 2 3 29 29 H 1.08999 * 109.47313 * 59.99910 * 1 2 3 30 30 H 1.08994 * 109.47036 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47207 * 240.00058 * 2 1 3 32 32 H 1.08999 * 109.47313 * 120.00090 * 2 1 3 33 33 H 1.08002 * 120.00299 * 305.00583 * 3 2 1 34 34 H 1.08002 * 119.99713 * 0.27722 * 4 3 2 35 35 H 1.09005 * 109.46922 * 245.00183 * 5 4 3 36 36 H 1.08994 * 109.47613 * 5.00521 * 5 4 3 37 37 H 1.09005 * 109.47105 * 299.99615 * 6 5 4 38 38 H 1.09006 * 109.47196 * 60.00008 * 6 5 4 39 39 H 1.09000 * 109.46374 * 305.85355 * 8 7 6 40 40 H 1.09001 * 109.46374 * 65.82768 * 8 7 6 41 41 H 1.08999 * 109.50598 * 180.88112 * 9 8 7 42 42 H 1.08994 * 109.53638 * 60.78070 * 9 8 7 43 43 H 1.09000 * 109.52457 * 297.75260 * 10 9 8 44 44 H 1.09003 * 109.52547 * 177.55976 * 10 9 8 45 45 H 1.09005 * 109.47281 * 54.80323 * 13 11 10 46 46 H 1.09001 * 109.47507 * 174.80548 * 13 11 10 47 47 H 0.97001 * 120.00058 * 359.97438 * 14 13 11 48 48 H 1.09005 * 109.46808 * 299.99804 * 17 15 14 49 49 H 1.09000 * 109.47629 * 59.99501 * 17 15 14 50 50 H 0.97003 * 119.99994 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.46484 * 294.17758 * 27 7 6 52 52 H 1.09001 * 109.46055 * 54.14687 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8599 1.8230 0.9325 5 6 3.3574 3.2455 0.9361 6 6 3.0559 3.8877 2.2916 7 7 3.5414 5.2742 2.2954 8 6 3.1563 5.9699 1.0608 9 6 3.7994 7.3583 1.0343 10 6 3.3346 8.1542 2.2570 11 6 3.7049 7.3848 3.5280 12 1 4.7884 7.2841 3.5905 13 6 3.1909 8.1440 4.7528 14 7 3.8923 9.4255 4.8627 15 6 3.6019 10.2682 5.8737 16 8 2.7595 9.9657 6.6922 17 6 4.3229 11.5867 5.9864 18 16 3.7150 12.4848 7.4354 19 6 4.6995 13.9422 7.3273 20 1 5.4126 14.0537 6.5239 21 6 4.5585 14.9468 8.2746 22 7 3.6897 14.8106 9.2542 23 14 5.6017 16.4921 8.1596 24 1 5.3330 17.1757 6.8690 25 1 5.2630 17.4028 9.2826 26 1 7.0388 16.1260 8.2361 27 6 3.0644 5.9956 3.4822 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7065 2.1088 -0.7661 34 1 3.1857 1.1350 1.6987 35 1 4.4332 3.2546 0.7609 36 1 2.8562 3.8077 0.1482 37 1 1.9801 3.8786 2.4668 38 1 3.5572 3.3255 3.0796 39 1 3.4964 5.3956 0.1991 40 1 2.0716 6.0714 1.0243 41 1 3.5008 7.8805 0.1253 42 1 4.8845 7.2579 1.0565 43 1 2.2538 8.2889 2.2147 44 1 3.8240 9.1282 2.2652 45 1 2.1210 8.3234 4.6466 46 1 3.3728 7.5522 5.6499 47 1 4.5662 9.6673 4.2083 48 1 5.3930 11.4077 6.0919 49 1 4.1403 12.1786 5.0895 50 1 3.5915 15.5125 9.9164 51 1 1.9802 6.0969 3.4343 52 1 3.3379 5.4399 4.3792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480243637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -46.361435 kcal Electronic energy + Delta-G solvation = -26064.140259 eV Core-core repulsion = 22381.920489 eV Total energy + Delta-G solvation = -3682.219770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.95295 -38.90047 -36.98163 -35.49555 -33.76396 -32.41258 -32.13131 -31.64108 -29.31498 -28.44647 -25.98436 -25.43874 -24.78786 -23.14186 -22.62806 -20.86711 -20.41434 -20.03298 -19.89236 -17.82566 -16.61598 -16.24785 -15.91594 -15.68842 -15.45287 -15.26689 -14.87515 -14.78979 -14.54037 -14.48943 -14.17190 -13.91297 -13.68993 -13.64473 -13.16601 -12.95197 -12.84002 -12.58541 -12.51332 -12.49319 -12.22150 -12.20021 -11.73114 -11.49785 -11.43265 -11.37660 -11.16891 -11.03049 -11.02637 -10.90721 -10.76721 -10.61871 -10.53761 -9.80687 -9.42954 -9.36198 -9.04768 -8.84007 -8.65341 -8.21990 -6.48154 -6.19968 -3.90523 1.77646 3.04446 3.13959 3.24634 3.28306 3.31278 3.49332 3.80615 4.22172 4.26181 4.40633 4.46148 4.53972 4.57725 4.70400 4.73482 4.85625 4.88774 4.90450 4.97877 5.01421 5.09997 5.15039 5.20025 5.22161 5.26320 5.29329 5.37596 5.39657 5.43901 5.45626 5.53497 5.55657 5.62050 5.64022 5.68238 5.72798 5.73182 5.80727 5.85770 5.92590 5.98917 6.14745 6.16498 6.23292 6.39456 6.64098 6.73534 6.74905 7.60722 7.75042 8.36566 8.65422 9.25166 10.87412 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036647 B = 0.001407 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.870888 B =19902.469717 C =20342.741093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.095 4.095 6 C 0.060 3.940 7 N -0.537 5.537 8 C 0.048 3.952 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.086 0.914 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.065 3.935 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.397 0.603 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.269 0.731 51 H 0.037 0.963 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -26.947 -22.084 34.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.178 4.178 4 C -0.175 4.175 5 C -0.132 4.132 6 C -0.067 4.067 7 N -0.262 5.262 8 C -0.080 4.080 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.113 4.113 12 H 0.105 0.895 13 C 0.002 3.998 14 N -0.391 5.391 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.064 4.064 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.232 0.768 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.056 0.944 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.202 -27.390 -20.517 34.293 hybrid contribution 1.068 1.472 -1.356 2.268 sum -1.134 -25.918 -21.873 33.933 Atomic orbital electron populations 1.21715 0.95137 1.01689 1.02067 1.20641 0.96177 0.94300 1.02252 1.22886 0.98422 0.97334 0.99146 1.22827 0.98657 0.96890 0.99080 1.20864 1.02120 0.92867 0.97327 1.22062 0.98087 0.88718 0.97847 1.61971 1.60160 1.01744 1.02285 1.22239 0.97703 0.95188 0.92862 1.21591 1.01410 0.94513 0.97959 1.21669 1.01384 0.98685 0.93850 1.21396 1.01718 0.93957 0.94271 0.89520 1.21234 0.96800 0.84439 0.97295 1.45978 1.43450 1.19273 1.30447 1.20301 0.82629 0.85139 0.80226 1.90701 1.32490 1.75773 1.40357 1.23529 1.03241 0.96416 1.07218 1.85392 1.53220 1.17082 1.27681 1.22835 1.25862 1.04085 1.15673 0.90986 1.24983 0.95621 0.98415 0.94487 1.70013 1.33276 1.33910 1.13134 0.86233 0.80140 0.81299 0.77878 1.19943 1.20807 1.19936 1.21998 0.97225 0.93881 0.93280 0.92594 0.92649 0.92572 0.91232 0.91637 0.87542 0.87303 0.90105 0.91263 0.94735 0.90431 0.90209 0.95005 0.91481 0.90994 0.91925 0.91377 0.91756 0.91545 0.76842 0.89239 0.89276 0.92141 0.94441 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.10 -0.47 6.38 -27.88 -0.18 -0.65 16 3 C -0.16 -0.90 9.12 -36.03 -0.33 -1.23 16 4 C -0.16 -0.90 9.12 -36.03 -0.33 -1.23 16 5 C -0.09 -0.56 4.91 -27.88 -0.14 -0.70 16 6 C 0.06 0.42 5.25 -3.82 -0.02 0.40 16 7 N -0.54 -4.20 4.81 -234.66 -1.13 -5.32 16 8 C 0.05 0.34 4.85 -3.83 -0.02 0.32 16 9 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 10 C -0.12 -0.97 5.13 -26.61 -0.14 -1.10 16 11 C -0.09 -0.82 2.39 -90.54 -0.22 -1.04 16 12 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 13 C 0.13 1.48 5.07 -4.04 -0.02 1.46 16 14 N -0.74 -9.88 5.31 -60.29 -0.32 -10.20 16 15 C 0.53 10.02 7.85 -10.99 -0.09 9.94 16 16 O -0.52 -11.97 15.86 5.55 0.09 -11.88 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.06 0.54 4.71 -3.83 -0.02 0.52 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 7.79 -51.93 -0.40 -0.10 16 33 H 0.11 0.58 7.84 -52.49 -0.41 0.16 16 34 H 0.11 0.59 7.84 -52.49 -0.41 0.18 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.40 5.86 -51.93 -0.30 0.10 16 37 H 0.03 0.25 8.08 -51.93 -0.42 -0.17 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.50 5.81 -51.93 -0.30 0.20 16 40 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.55 7.27 -51.93 -0.38 0.18 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.40 4.21 7.68 -40.82 -0.31 3.90 16 48 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 49 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 52 H 0.08 0.65 8.12 -51.93 -0.42 0.22 16 LS Contribution 425.24 15.07 6.41 6.41 Total: -1.00 -33.72 425.24 -11.99 -45.71 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -9.67 Total: -1.14 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.86 Total: -10.58 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.71 Total: -41.10 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.72 -11.99 -45.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.650 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds