Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47175 * 2 1 4 4 C 1.31005 * 119.99932 * 124.72247 * 3 2 1 5 5 C 1.50699 * 119.99776 * 180.27660 * 4 3 2 6 6 C 1.52999 * 109.46909 * 125.00456 * 5 4 3 7 7 N 1.46902 * 109.47122 * 179.97438 * 6 5 4 8 8 C 1.46845 * 110.99918 * 45.78929 * 7 6 5 9 9 C 1.53038 * 109.52356 * 185.84012 * 8 7 6 10 10 C 1.53117 * 109.27900 * 300.82062 * 9 8 7 11 11 C 1.53118 * 109.16103 * 57.65321 * 10 9 8 12 12 H 1.08996 * 109.53524 * 62.30797 * 11 10 9 13 13 C 1.53000 * 109.50627 * 182.40673 * 11 10 9 14 14 N 1.46500 * 109.46955 * 294.80640 * 13 11 10 15 15 C 1.34780 * 120.00056 * 180.02562 * 14 13 11 16 16 O 1.21287 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00100 * 180.02562 * 15 14 13 18 18 S 1.80995 * 109.47242 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00114 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99646 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99832 * 179.97438 * 19 18 17 22 22 N 1.31637 * 120.00376 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47147 * 59.99721 * 23 21 19 25 25 H 1.48497 * 109.47427 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46914 * 299.99835 * 23 21 19 27 27 C 1.46848 * 110.99962 * 169.99664 * 7 6 5 28 28 H 1.09002 * 109.47207 * 299.99942 * 1 2 3 29 29 H 1.08999 * 109.47313 * 59.99910 * 1 2 3 30 30 H 1.08994 * 109.47036 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47207 * 240.00058 * 2 1 3 32 32 H 1.08999 * 109.47313 * 120.00090 * 2 1 3 33 33 H 1.08002 * 120.00299 * 305.00583 * 3 2 1 34 34 H 1.08002 * 119.99713 * 0.27722 * 4 3 2 35 35 H 1.09005 * 109.46922 * 245.00183 * 5 4 3 36 36 H 1.08994 * 109.47613 * 5.00521 * 5 4 3 37 37 H 1.09005 * 109.47105 * 299.99615 * 6 5 4 38 38 H 1.09006 * 109.47196 * 60.00008 * 6 5 4 39 39 H 1.09000 * 109.46374 * 305.85355 * 8 7 6 40 40 H 1.09001 * 109.46374 * 65.82768 * 8 7 6 41 41 H 1.08999 * 109.50598 * 180.88112 * 9 8 7 42 42 H 1.08994 * 109.53638 * 60.78070 * 9 8 7 43 43 H 1.09000 * 109.52457 * 297.75260 * 10 9 8 44 44 H 1.09003 * 109.52547 * 177.55976 * 10 9 8 45 45 H 1.09005 * 109.47281 * 54.80323 * 13 11 10 46 46 H 1.09001 * 109.47507 * 174.80548 * 13 11 10 47 47 H 0.97001 * 120.00058 * 359.97438 * 14 13 11 48 48 H 1.09005 * 109.46808 * 299.99804 * 17 15 14 49 49 H 1.09000 * 109.47629 * 59.99501 * 17 15 14 50 50 H 0.97003 * 119.99994 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.46484 * 294.17758 * 27 7 6 52 52 H 1.09001 * 109.46055 * 54.14687 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8599 1.8230 0.9325 5 6 3.3574 3.2455 0.9361 6 6 3.0559 3.8877 2.2916 7 7 3.5414 5.2742 2.2954 8 6 3.1563 5.9699 1.0608 9 6 3.7994 7.3583 1.0343 10 6 3.3346 8.1542 2.2570 11 6 3.7049 7.3848 3.5280 12 1 4.7884 7.2841 3.5905 13 6 3.1909 8.1440 4.7528 14 7 3.8923 9.4255 4.8627 15 6 3.6019 10.2682 5.8737 16 8 2.7595 9.9657 6.6922 17 6 4.3229 11.5867 5.9864 18 16 3.7150 12.4848 7.4354 19 6 4.6995 13.9422 7.3273 20 1 5.4126 14.0537 6.5239 21 6 4.5585 14.9468 8.2746 22 7 3.6897 14.8106 9.2542 23 14 5.6017 16.4921 8.1596 24 1 5.3330 17.1757 6.8690 25 1 5.2630 17.4028 9.2826 26 1 7.0388 16.1260 8.2361 27 6 3.0644 5.9956 3.4822 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7065 2.1088 -0.7661 34 1 3.1857 1.1350 1.6987 35 1 4.4332 3.2546 0.7609 36 1 2.8562 3.8077 0.1482 37 1 1.9801 3.8786 2.4668 38 1 3.5572 3.3255 3.0796 39 1 3.4964 5.3956 0.1991 40 1 2.0716 6.0714 1.0243 41 1 3.5008 7.8805 0.1253 42 1 4.8845 7.2579 1.0565 43 1 2.2538 8.2889 2.2147 44 1 3.8240 9.1282 2.2652 45 1 2.1210 8.3234 4.6466 46 1 3.3728 7.5522 5.6499 47 1 4.5662 9.6673 4.2083 48 1 5.3930 11.4077 6.0919 49 1 4.1403 12.1786 5.0895 50 1 3.5915 15.5125 9.9164 51 1 1.9802 6.0969 3.4343 52 1 3.3379 5.4399 4.3792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480243637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -67.138812 kcal Electronic energy + Delta-G solvation = -26065.041234 eV Core-core repulsion = 22381.920489 eV Total energy + Delta-G solvation = -3683.120745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.90615 -40.05747 -37.55664 -36.34887 -34.63547 -34.56319 -32.65871 -32.57207 -30.68126 -29.03056 -27.70179 -26.73711 -25.46302 -23.72636 -23.21757 -21.75848 -21.49084 -20.69400 -20.44617 -19.80073 -17.83170 -17.41175 -16.90332 -16.86373 -16.63131 -16.19566 -16.12115 -15.74131 -15.39336 -15.35603 -15.06526 -14.86613 -14.73236 -14.44427 -14.25017 -14.12945 -13.85619 -13.58341 -13.29609 -13.16239 -13.02787 -12.96942 -12.85807 -12.83791 -12.67135 -12.60715 -12.09923 -11.97430 -11.86979 -11.74251 -11.60125 -11.59092 -11.27552 -11.19414 -11.12041 -10.93814 -10.27267 -10.10975 -9.85601 -9.27844 -8.66123 -8.33683 -6.12076 1.27519 1.33725 1.44712 1.47620 1.57425 1.62108 2.25755 2.29847 2.91823 3.00452 3.33242 3.69346 3.75022 3.85544 3.89825 3.99726 4.11173 4.17747 4.21799 4.27209 4.30640 4.37519 4.43554 4.47386 4.49935 4.51538 4.51994 4.57284 4.60045 4.67930 4.75844 4.78417 4.86421 4.90540 4.98602 5.06184 5.09765 5.10638 5.16794 5.18793 5.19516 5.27874 5.35311 5.40494 5.42367 5.50947 5.80148 5.95276 6.11421 6.14983 6.20413 6.51159 7.07470 7.25060 8.75348 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036647 B = 0.001407 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.870888 B =19902.469717 C =20342.741093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.162 4.162 4 C -0.163 4.163 5 C -0.087 4.087 6 C 0.062 3.938 7 N -0.541 5.541 8 C 0.047 3.953 9 C -0.112 4.112 10 C -0.118 4.118 11 C -0.080 4.080 12 H 0.092 0.908 13 C 0.128 3.872 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C 0.065 3.935 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.415 0.585 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.271 0.729 51 H 0.031 0.969 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -27.148 -24.446 36.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.180 4.180 4 C -0.182 4.182 5 C -0.124 4.124 6 C -0.065 4.065 7 N -0.265 5.265 8 C -0.081 4.081 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.099 4.099 12 H 0.111 0.889 13 C 0.004 3.996 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.063 4.063 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.253 0.747 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.080 0.920 51 H 0.050 0.950 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.513 -27.623 -22.939 35.909 hybrid contribution 0.526 1.396 -0.709 1.652 sum 0.014 -26.227 -23.648 35.314 Atomic orbital electron populations 1.21713 0.94999 1.02074 1.01794 1.20668 0.96288 0.93933 1.02595 1.23014 0.98157 0.97793 0.99058 1.22867 0.98992 0.96918 0.99374 1.20782 1.02040 0.92873 0.96696 1.22062 0.97638 0.88320 0.98527 1.61991 1.60158 1.02102 1.02249 1.22290 0.97440 0.95438 0.92908 1.21566 1.01396 0.94266 0.97772 1.21676 1.00990 0.98960 0.93974 1.21265 1.01798 0.93807 0.93047 0.88928 1.21330 0.96222 0.83472 0.98562 1.45714 1.42957 1.18812 1.28860 1.20079 0.82020 0.85221 0.80828 1.90692 1.34707 1.76674 1.42557 1.23372 1.04086 0.96521 1.04087 1.85583 1.55023 1.19042 1.32883 1.23186 1.25952 1.04259 1.16178 0.89861 1.26120 0.96861 1.02227 0.93808 1.70183 1.35217 1.35263 1.14167 0.85013 0.78364 0.76357 0.78318 1.18616 1.20408 1.18634 1.21952 0.96841 0.93709 0.93819 0.93267 0.92506 0.91894 0.90622 0.91564 0.87357 0.87076 0.90179 0.91025 0.95375 0.90410 0.89103 0.95544 0.90361 0.90830 0.92700 0.90993 0.92742 0.92293 0.74721 0.87162 0.87159 0.91998 0.95039 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.53 16 2 C -0.10 -0.85 6.38 29.85 0.19 -0.66 16 3 C -0.16 -1.66 9.12 25.64 0.23 -1.42 16 4 C -0.16 -1.72 9.12 25.64 0.23 -1.49 16 5 C -0.09 -0.91 4.91 29.85 0.15 -0.76 16 6 C 0.06 0.79 5.25 86.30 0.45 1.24 16 7 N -0.54 -7.64 4.81 -896.33 -4.31 -11.95 16 8 C 0.05 0.58 4.85 86.33 0.42 1.00 16 9 C -0.11 -1.33 6.09 30.65 0.19 -1.14 16 10 C -0.12 -1.70 5.13 30.67 0.16 -1.54 16 11 C -0.08 -1.27 2.39 -10.74 -0.03 -1.29 16 12 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 13 C 0.13 2.89 5.07 86.38 0.44 3.32 16 14 N -0.71 -17.87 5.31 -463.05 -2.46 -20.33 16 15 C 0.53 19.80 7.85 87.66 0.69 20.49 16 16 O -0.57 -26.71 15.86 -3.05 -0.05 -26.76 16 17 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 19 C -0.55 -31.39 9.50 67.95 0.65 -30.75 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.83 5.49 84.86 0.47 1.30 16 22 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 23 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 C 0.07 1.02 4.71 86.33 0.41 1.43 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.56 7.79 -2.39 -0.02 0.54 16 33 H 0.11 1.05 7.84 -2.91 -0.02 1.02 16 34 H 0.11 1.10 7.84 -2.91 -0.02 1.08 16 35 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.72 5.86 -2.39 -0.01 0.70 16 37 H 0.03 0.39 8.08 -2.38 -0.02 0.38 16 38 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.09 0.94 5.81 -2.39 -0.01 0.93 16 40 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.98 7.27 -2.39 -0.02 0.96 16 45 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.42 7.64 7.68 -92.71 -0.71 6.93 16 48 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 49 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 50 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 51 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 Total: -1.00 -74.41 425.24 0.28 -74.13 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.16 Total: 20.52 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.79 Total: -15.51 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -6.48 Total: -88.28 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -74.41 0.28 -74.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.986 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds