Wall clock time and date at job start Sat Apr 11 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47246 * 2 1 4 4 C 1.31004 * 119.99870 * 126.39610 * 3 2 1 5 5 C 1.50692 * 120.00109 * 7.33080 * 4 3 2 6 6 C 1.53005 * 109.46991 * 127.62480 * 5 4 3 7 7 N 1.46903 * 109.46752 * 180.02562 * 6 5 4 8 8 C 1.46840 * 111.00501 * 45.78877 * 7 6 5 9 9 C 1.53037 * 109.52595 * 185.83611 * 8 7 6 10 10 C 1.53113 * 109.27983 * 300.82255 * 9 8 7 11 11 C 1.53125 * 109.15986 * 57.65082 * 10 9 8 12 12 H 1.09000 * 109.53163 * 62.30817 * 11 10 9 13 13 C 1.53002 * 109.50278 * 182.40262 * 11 10 9 14 14 N 1.46502 * 109.47508 * 294.80726 * 13 11 10 15 15 C 1.34772 * 120.00298 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99776 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00264 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.47234 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99883 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00096 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00011 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00064 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99842 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46582 * 90.00090 * 23 21 19 25 25 H 1.48499 * 109.47047 * 209.99579 * 23 21 19 26 26 H 1.48501 * 109.47420 * 330.00166 * 23 21 19 27 27 C 1.46847 * 110.99650 * 170.00247 * 7 6 5 28 28 H 1.08997 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47247 * 300.00537 * 1 2 3 30 30 H 1.09003 * 109.46995 * 60.00274 * 1 2 3 31 31 H 1.08997 * 109.47247 * 239.99463 * 2 1 3 32 32 H 1.09003 * 109.46995 * 119.99725 * 2 1 3 33 33 H 1.07999 * 119.99757 * 306.39850 * 3 2 1 34 34 H 1.08001 * 119.99727 * 187.60692 * 4 3 2 35 35 H 1.09004 * 109.47435 * 247.62334 * 5 4 3 36 36 H 1.09000 * 109.47438 * 7.62556 * 5 4 3 37 37 H 1.08999 * 109.47332 * 299.99983 * 6 5 4 38 38 H 1.09002 * 109.47247 * 60.00237 * 6 5 4 39 39 H 1.09004 * 109.46571 * 305.85884 * 8 7 6 40 40 H 1.09008 * 109.46054 * 65.82455 * 8 7 6 41 41 H 1.08998 * 109.50152 * 180.88111 * 9 8 7 42 42 H 1.08999 * 109.53284 * 60.78245 * 9 8 7 43 43 H 1.09002 * 109.52224 * 297.74883 * 10 9 8 44 44 H 1.08996 * 109.57788 * 177.58985 * 10 9 8 45 45 H 1.08998 * 109.46978 * 54.80664 * 13 11 10 46 46 H 1.09000 * 109.47221 * 174.80693 * 13 11 10 47 47 H 0.97008 * 119.99707 * 359.97438 * 14 13 11 48 48 H 1.08998 * 109.47046 * 299.99947 * 17 15 14 49 49 H 1.09000 * 109.46845 * 59.99787 * 17 15 14 50 50 H 0.97001 * 119.99882 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.46394 * 294.17526 * 27 7 6 52 52 H 1.09001 * 109.46560 * 54.13929 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8854 1.8139 0.9132 5 6 3.4908 0.8105 1.8606 6 6 5.0148 0.9440 1.8394 7 7 5.6050 -0.0346 2.7625 8 6 4.9898 -1.3569 2.5915 9 6 5.5226 -2.3113 3.6626 10 6 7.0448 -2.4156 3.5347 11 6 7.6573 -1.0185 3.6682 12 1 7.4346 -0.6159 4.6563 13 6 9.1734 -1.1054 3.4819 14 7 9.7561 -1.8854 4.5766 15 6 11.0868 -2.0944 4.6213 16 8 11.8018 -1.6371 3.7550 17 6 11.6862 -2.8963 5.7477 18 16 13.4797 -2.9992 5.5271 19 6 13.9071 -3.9604 6.9407 20 1 13.1370 -4.2913 7.6217 21 6 15.2335 -4.2933 7.1784 22 7 15.5528 -5.0117 8.2341 23 14 16.5655 -3.7216 6.0001 24 1 17.0782 -2.3982 6.4372 25 1 17.6774 -4.7059 5.9947 26 1 15.9999 -3.6060 4.6319 27 6 7.0625 -0.1016 2.5970 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6891 2.1149 -0.7529 34 1 3.1514 2.8578 0.9900 35 1 3.1238 0.9964 2.8700 36 1 3.2100 -0.1964 1.5516 37 1 5.3819 0.7581 0.8300 38 1 5.2957 1.9509 2.1484 39 1 3.9076 -1.2694 2.6889 40 1 5.2350 -1.7466 1.6035 41 1 5.0776 -3.2968 3.5258 42 1 5.2657 -1.9300 4.6509 43 1 7.3008 -2.8340 2.5613 44 1 7.4342 -3.0607 4.3223 45 1 9.3954 -1.5909 2.5316 46 1 9.5980 -0.1015 3.4850 47 1 9.1842 -2.2509 5.2697 48 1 11.4639 -2.4106 6.6978 49 1 11.2619 -3.9003 5.7448 50 1 16.4797 -5.2440 8.4004 51 1 7.2981 -0.4971 1.6089 52 1 7.4859 0.8977 2.6983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480243639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:08 Heat of formation + Delta-G solvation = -38.124318 kcal Electronic energy + Delta-G solvation = -26365.928524 eV Core-core repulsion = 22684.065942 eV Total energy + Delta-G solvation = -3681.862582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.02619 -39.03384 -37.34421 -35.48577 -33.65479 -32.43014 -31.88086 -31.68639 -29.47168 -28.57353 -26.03291 -25.56738 -24.62853 -23.69232 -23.00885 -21.23569 -20.50583 -19.95968 -18.75911 -17.86650 -16.70554 -16.35146 -16.29546 -15.95423 -15.43820 -15.38198 -14.95672 -14.79458 -14.60740 -14.40501 -14.29226 -14.16695 -13.70363 -13.60768 -13.27134 -13.00049 -12.90220 -12.78090 -12.61914 -12.48223 -12.29836 -12.05380 -11.84506 -11.69995 -11.44862 -11.38315 -11.25709 -11.00038 -10.98669 -10.87819 -10.66359 -10.58755 -10.46586 -9.84764 -9.50945 -9.40154 -9.00543 -8.93134 -8.68104 -8.48711 -6.90531 -6.28016 -3.99558 1.74472 2.77897 3.00696 3.27612 3.34237 3.50094 3.51771 3.72790 4.24380 4.34128 4.37363 4.41544 4.52758 4.57259 4.64301 4.71333 4.75708 4.79399 4.85359 4.87292 4.99246 5.04394 5.11173 5.13529 5.16181 5.23182 5.24320 5.27949 5.34697 5.36814 5.42975 5.44729 5.53815 5.55570 5.63948 5.66624 5.67911 5.72524 5.74505 5.79002 5.83421 5.93490 6.03121 6.10648 6.20739 6.38519 6.54973 6.70751 6.71445 7.64010 7.95078 8.42629 8.52078 9.18318 10.81247 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.001494 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.802917 B =18732.139222 C =19114.969935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.160 4.160 4 C -0.157 4.157 5 C -0.105 4.105 6 C 0.062 3.938 7 N -0.537 5.537 8 C 0.048 3.952 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.095 4.095 12 H 0.087 0.913 13 C 0.127 3.873 14 N -0.735 5.735 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.065 3.935 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.399 0.601 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.037 0.963 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.240 10.754 -14.512 36.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.178 4.178 4 C -0.176 4.176 5 C -0.142 4.142 6 C -0.066 4.066 7 N -0.261 5.261 8 C -0.080 4.080 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.105 0.895 13 C 0.003 3.997 14 N -0.389 5.389 15 C 0.316 3.684 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.064 4.064 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.233 0.767 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.080 0.920 51 H 0.055 0.945 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -29.997 11.581 -15.385 35.646 hybrid contribution -0.214 -0.734 0.209 0.793 sum -30.212 10.847 -15.176 35.506 Atomic orbital electron populations 1.21693 0.95036 1.01711 1.01950 1.20827 0.96203 0.94761 1.02665 1.22820 0.98759 0.97561 0.98666 1.22761 0.98367 0.99359 0.97069 1.21038 0.94494 0.98932 0.99731 1.22039 0.93780 0.96628 0.94136 1.61957 1.04061 1.07564 1.52544 1.22237 0.99458 0.88751 0.97529 1.21591 0.95548 0.98626 0.99722 1.21670 0.95255 0.96259 1.02419 1.21399 0.93298 0.95996 1.00679 0.89458 1.21247 0.91539 0.96385 0.90576 1.45941 1.07705 1.56694 1.28578 1.20270 0.81528 0.79955 0.86666 1.90697 1.60019 1.49559 1.39283 1.23277 1.02319 1.02425 0.99449 1.84784 0.98210 1.71369 1.37240 1.22326 0.97260 1.37845 1.09486 0.89395 1.24706 0.97936 0.93609 0.94994 1.69937 1.19165 1.36249 1.26378 0.86738 0.82120 0.79357 0.83659 1.19202 1.19944 1.15935 1.21993 0.87272 1.00032 0.97074 0.92529 0.92622 0.92723 0.91393 0.90666 0.87362 0.87215 0.90268 0.90163 0.94755 0.90474 0.90257 0.94986 0.91431 0.90953 0.91932 0.91344 0.91706 0.91500 0.76658 0.88503 0.88502 0.91955 0.94453 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.11 -0.54 6.04 -27.88 -0.17 -0.71 16 3 C -0.16 -0.88 9.51 -36.03 -0.34 -1.22 16 4 C -0.16 -0.89 9.51 -36.03 -0.34 -1.23 16 5 C -0.11 -0.60 4.55 -27.88 -0.13 -0.73 16 6 C 0.06 0.41 5.26 -3.82 -0.02 0.39 16 7 N -0.54 -4.01 4.81 -234.67 -1.13 -5.14 16 8 C 0.05 0.32 4.85 -3.84 -0.02 0.31 16 9 C -0.12 -0.79 6.09 -26.65 -0.16 -0.95 16 10 C -0.12 -0.91 5.13 -26.61 -0.14 -1.05 16 11 C -0.09 -0.78 2.39 -90.54 -0.22 -0.99 16 12 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 13 C 0.13 1.40 5.07 -4.04 -0.02 1.38 16 14 N -0.73 -9.26 5.31 -60.29 -0.32 -9.58 16 15 C 0.53 9.43 7.85 -10.99 -0.09 9.35 16 16 O -0.52 -11.34 15.86 5.56 0.09 -11.25 16 17 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 18 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 23 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.06 0.51 4.71 -3.84 -0.02 0.49 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.37 5.27 -51.93 -0.27 0.10 16 33 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.44 3.36 -51.93 -0.17 0.27 16 37 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.47 5.81 -51.93 -0.30 0.17 16 40 H 0.03 0.23 8.14 -51.92 -0.42 -0.19 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.53 7.26 -51.93 -0.38 0.15 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.40 3.95 7.68 -40.82 -0.31 3.64 16 48 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 49 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 50 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 418.04 15.07 6.30 6.30 Total: -1.00 -33.38 418.04 -11.32 -44.70 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.47 Total: -1.20 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.85 Total: -9.50 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.67 Total: -40.59 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.38 -11.32 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.576 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds