Wall clock time and date at job start Sat Apr 11 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47246 * 2 1 4 4 C 1.31004 * 119.99870 * 126.39610 * 3 2 1 5 5 C 1.50692 * 120.00109 * 7.33080 * 4 3 2 6 6 C 1.53005 * 109.46991 * 127.62480 * 5 4 3 7 7 N 1.46903 * 109.46752 * 180.02562 * 6 5 4 8 8 C 1.46840 * 111.00501 * 45.78877 * 7 6 5 9 9 C 1.53037 * 109.52595 * 185.83611 * 8 7 6 10 10 C 1.53113 * 109.27983 * 300.82255 * 9 8 7 11 11 C 1.53125 * 109.15986 * 57.65082 * 10 9 8 12 12 H 1.09000 * 109.53163 * 62.30817 * 11 10 9 13 13 C 1.53002 * 109.50278 * 182.40262 * 11 10 9 14 14 N 1.46502 * 109.47508 * 294.80726 * 13 11 10 15 15 C 1.34772 * 120.00298 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99776 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00264 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.47234 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99883 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00096 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00011 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00064 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99842 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46582 * 90.00090 * 23 21 19 25 25 H 1.48499 * 109.47047 * 209.99579 * 23 21 19 26 26 H 1.48501 * 109.47420 * 330.00166 * 23 21 19 27 27 C 1.46847 * 110.99650 * 170.00247 * 7 6 5 28 28 H 1.08997 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47247 * 300.00537 * 1 2 3 30 30 H 1.09003 * 109.46995 * 60.00274 * 1 2 3 31 31 H 1.08997 * 109.47247 * 239.99463 * 2 1 3 32 32 H 1.09003 * 109.46995 * 119.99725 * 2 1 3 33 33 H 1.07999 * 119.99757 * 306.39850 * 3 2 1 34 34 H 1.08001 * 119.99727 * 187.60692 * 4 3 2 35 35 H 1.09004 * 109.47435 * 247.62334 * 5 4 3 36 36 H 1.09000 * 109.47438 * 7.62556 * 5 4 3 37 37 H 1.08999 * 109.47332 * 299.99983 * 6 5 4 38 38 H 1.09002 * 109.47247 * 60.00237 * 6 5 4 39 39 H 1.09004 * 109.46571 * 305.85884 * 8 7 6 40 40 H 1.09008 * 109.46054 * 65.82455 * 8 7 6 41 41 H 1.08998 * 109.50152 * 180.88111 * 9 8 7 42 42 H 1.08999 * 109.53284 * 60.78245 * 9 8 7 43 43 H 1.09002 * 109.52224 * 297.74883 * 10 9 8 44 44 H 1.08996 * 109.57788 * 177.58985 * 10 9 8 45 45 H 1.08998 * 109.46978 * 54.80664 * 13 11 10 46 46 H 1.09000 * 109.47221 * 174.80693 * 13 11 10 47 47 H 0.97008 * 119.99707 * 359.97438 * 14 13 11 48 48 H 1.08998 * 109.47046 * 299.99947 * 17 15 14 49 49 H 1.09000 * 109.46845 * 59.99787 * 17 15 14 50 50 H 0.97001 * 119.99882 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.46394 * 294.17526 * 27 7 6 52 52 H 1.09001 * 109.46560 * 54.13929 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8854 1.8139 0.9132 5 6 3.4908 0.8105 1.8606 6 6 5.0148 0.9440 1.8394 7 7 5.6050 -0.0346 2.7625 8 6 4.9898 -1.3569 2.5915 9 6 5.5226 -2.3113 3.6626 10 6 7.0448 -2.4156 3.5347 11 6 7.6573 -1.0185 3.6682 12 1 7.4346 -0.6159 4.6563 13 6 9.1734 -1.1054 3.4819 14 7 9.7561 -1.8854 4.5766 15 6 11.0868 -2.0944 4.6213 16 8 11.8018 -1.6371 3.7550 17 6 11.6862 -2.8963 5.7477 18 16 13.4797 -2.9992 5.5271 19 6 13.9071 -3.9604 6.9407 20 1 13.1370 -4.2913 7.6217 21 6 15.2335 -4.2933 7.1784 22 7 15.5528 -5.0117 8.2341 23 14 16.5655 -3.7216 6.0001 24 1 17.0782 -2.3982 6.4372 25 1 17.6774 -4.7059 5.9947 26 1 15.9999 -3.6060 4.6319 27 6 7.0625 -0.1016 2.5970 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6891 2.1149 -0.7529 34 1 3.1514 2.8578 0.9900 35 1 3.1238 0.9964 2.8700 36 1 3.2100 -0.1964 1.5516 37 1 5.3819 0.7581 0.8300 38 1 5.2957 1.9509 2.1484 39 1 3.9076 -1.2694 2.6889 40 1 5.2350 -1.7466 1.6035 41 1 5.0776 -3.2968 3.5258 42 1 5.2657 -1.9300 4.6509 43 1 7.3008 -2.8340 2.5613 44 1 7.4342 -3.0607 4.3223 45 1 9.3954 -1.5909 2.5316 46 1 9.5980 -0.1015 3.4850 47 1 9.1842 -2.2509 5.2697 48 1 11.4639 -2.4106 6.6978 49 1 11.2619 -3.9003 5.7448 50 1 16.4797 -5.2440 8.4004 51 1 7.2981 -0.4971 1.6089 52 1 7.4859 0.8977 2.6983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480243639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:07 Heat of formation + Delta-G solvation = -58.827617 kcal Electronic energy + Delta-G solvation = -26366.826286 eV Core-core repulsion = 22684.065942 eV Total energy + Delta-G solvation = -3682.760345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.93503 -40.10274 -37.87828 -36.35548 -34.67298 -34.46061 -32.58833 -32.31842 -30.75442 -29.14481 -27.87322 -26.77275 -25.27488 -24.10167 -23.61262 -21.92948 -21.75648 -20.67002 -19.85952 -19.18488 -17.89902 -17.41073 -17.09578 -16.98843 -16.72617 -16.61836 -16.02218 -15.73629 -15.47513 -15.18222 -15.00641 -14.96920 -14.86964 -14.75493 -14.45427 -14.14378 -13.88499 -13.60066 -13.34334 -13.30586 -13.06191 -13.02843 -12.98237 -12.74669 -12.66895 -12.51482 -12.20079 -12.02812 -11.86714 -11.80277 -11.61113 -11.42622 -11.27452 -11.16725 -11.02491 -10.95541 -10.53123 -10.12845 -9.82883 -9.26781 -8.99196 -8.51183 -6.21956 0.99527 1.31739 1.31984 1.47259 1.56407 1.57375 2.21780 2.26626 2.71816 2.87253 2.93296 3.69286 3.75149 3.84906 3.89288 3.91520 4.14303 4.17161 4.19559 4.23630 4.29062 4.32981 4.40493 4.46303 4.48112 4.50531 4.53558 4.59518 4.66477 4.71290 4.76789 4.78322 4.83309 4.90303 4.98300 5.05148 5.10368 5.12469 5.18233 5.21918 5.24705 5.28171 5.36438 5.39018 5.50727 5.71148 5.79239 5.95847 6.11844 6.12574 6.15687 6.47261 6.94189 7.19820 8.61230 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039217 B = 0.001494 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.802917 B =18732.139222 C =19114.969935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.163 4.163 4 C -0.165 4.165 5 C -0.098 4.098 6 C 0.064 3.936 7 N -0.541 5.541 8 C 0.047 3.953 9 C -0.113 4.113 10 C -0.118 4.118 11 C -0.081 4.081 12 H 0.092 0.908 13 C 0.129 3.871 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C 0.066 3.934 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.416 0.584 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.277 0.723 51 H 0.033 0.967 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.853 11.219 -15.211 37.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.181 4.181 4 C -0.183 4.183 5 C -0.135 4.135 6 C -0.064 4.064 7 N -0.266 5.266 8 C -0.080 4.080 9 C -0.151 4.151 10 C -0.156 4.156 11 C -0.100 4.100 12 H 0.110 0.890 13 C 0.005 3.995 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.262 4.262 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.063 4.063 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.253 0.747 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.086 0.914 51 H 0.051 0.949 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -31.669 12.040 -16.064 37.496 hybrid contribution 0.097 -0.859 0.433 0.967 sum -31.573 11.181 -15.630 36.962 Atomic orbital electron populations 1.21688 0.94628 1.02069 1.01928 1.20852 0.96576 0.94461 1.02723 1.22968 0.98575 0.97979 0.98617 1.22825 0.98658 0.99602 0.97260 1.20962 0.93751 0.99159 0.99594 1.22034 0.94320 0.96413 0.93630 1.61975 1.03672 1.08093 1.52820 1.22281 1.00037 0.88376 0.97336 1.21567 0.94673 0.99200 0.99637 1.21676 0.96093 0.95669 1.02175 1.21271 0.91079 0.96655 1.01008 0.89018 1.21343 0.93236 0.95505 0.89442 1.45713 1.06036 1.55427 1.29095 1.19955 0.82869 0.79584 0.85607 1.90688 1.61395 1.51547 1.40699 1.23272 0.97633 1.04207 1.01120 1.84717 1.04041 1.70634 1.35641 1.22470 0.96984 1.38047 1.10218 0.91920 1.25542 1.00084 0.93715 0.96475 1.70013 1.20109 1.37412 1.27950 0.85879 0.79777 0.79352 0.81435 1.18701 1.18298 1.16136 1.21952 0.87807 0.99924 0.96623 0.92003 0.92881 0.92513 0.91313 0.90605 0.86895 0.86872 0.90541 0.89846 0.95292 0.90476 0.89256 0.95411 0.90390 0.90944 0.92571 0.91040 0.92485 0.92069 0.74683 0.86808 0.86766 0.91370 0.94923 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 71.98 0.71 -0.40 16 2 C -0.11 -0.95 6.04 29.85 0.18 -0.77 16 3 C -0.16 -1.61 9.51 25.64 0.24 -1.37 16 4 C -0.16 -1.68 9.51 25.64 0.24 -1.44 16 5 C -0.10 -0.99 4.55 29.85 0.14 -0.85 16 6 C 0.06 0.76 5.26 86.30 0.45 1.21 16 7 N -0.54 -7.20 4.81 -896.35 -4.31 -11.51 16 8 C 0.05 0.55 4.85 86.33 0.42 0.97 16 9 C -0.11 -1.27 6.09 30.64 0.19 -1.08 16 10 C -0.12 -1.58 5.13 30.67 0.16 -1.42 16 11 C -0.08 -1.18 2.39 -10.74 -0.03 -1.20 16 12 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 13 C 0.13 2.63 5.07 86.38 0.44 3.07 16 14 N -0.71 -16.41 5.31 -463.06 -2.46 -18.86 16 15 C 0.53 18.26 7.85 87.66 0.69 18.94 16 16 O -0.56 -24.23 15.86 -3.03 -0.05 -24.28 16 17 C -0.11 -4.16 6.16 71.24 0.44 -3.73 16 18 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 19 C -0.53 -30.88 10.04 67.96 0.68 -30.20 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.78 5.50 84.86 0.47 3.25 16 22 N -0.92 -55.87 13.97 21.65 0.30 -55.57 16 23 Si 0.91 45.11 27.74 68.60 1.90 47.01 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 27 C 0.07 0.94 4.71 86.32 0.41 1.35 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.64 5.27 -2.39 -0.01 0.63 16 33 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 0.79 3.36 -2.39 -0.01 0.78 16 37 H 0.03 0.38 8.08 -2.39 -0.02 0.36 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.87 5.81 -2.39 -0.01 0.86 16 40 H 0.03 0.35 8.14 -2.38 -0.02 0.34 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.91 7.26 -2.39 -0.02 0.89 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.42 7.04 7.68 -92.70 -0.71 6.33 16 48 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 49 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 50 H 0.28 15.60 8.31 -92.71 -0.77 14.82 16 51 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 Total: -1.00 -71.53 418.04 0.30 -71.23 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.13 Total: 15.67 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.83 Total: -13.67 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -6.46 Total: -85.95 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -71.53 0.30 -71.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.402 kcal (2) G-P(sol) polarization free energy of solvation -71.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds