Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47222 * 2 1 4 4 C 1.30999 * 120.00025 * 124.99639 * 3 2 1 5 5 C 1.50699 * 120.00025 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47145 * 125.00447 * 5 4 3 7 7 N 1.46902 * 109.47163 * 180.02562 * 6 5 4 8 8 C 1.46847 * 110.99726 * 294.20857 * 7 6 5 9 9 C 1.53040 * 109.52065 * 174.16169 * 8 7 6 10 10 C 1.53116 * 109.27835 * 59.18106 * 9 8 7 11 11 C 1.53126 * 109.15940 * 302.34355 * 10 9 8 12 12 H 1.08998 * 109.53686 * 297.69628 * 11 10 9 13 13 C 1.52998 * 109.50194 * 177.59659 * 11 10 9 14 14 N 1.46506 * 109.47237 * 65.19583 * 13 11 10 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 11 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 S 1.80989 * 109.47203 * 180.02562 * 17 15 14 19 19 C 1.76206 * 100.00010 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99621 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00085 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00415 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.47144 * 90.00296 * 23 21 19 25 25 H 1.48502 * 109.47646 * 210.00409 * 23 21 19 26 26 H 1.48502 * 109.47363 * 330.00583 * 23 21 19 27 27 C 1.46844 * 110.99885 * 169.99993 * 7 6 5 28 28 H 1.08999 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47084 * 299.99752 * 1 2 3 30 30 H 1.09001 * 109.47574 * 60.00054 * 1 2 3 31 31 H 1.09001 * 109.46875 * 239.99586 * 2 1 3 32 32 H 1.09004 * 109.46689 * 120.00100 * 2 1 3 33 33 H 1.07999 * 119.99797 * 305.00180 * 3 2 1 34 34 H 1.08005 * 119.99775 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46998 * 5.00544 * 5 4 3 36 36 H 1.08998 * 109.47013 * 245.00396 * 5 4 3 37 37 H 1.09001 * 109.47093 * 60.00155 * 6 5 4 38 38 H 1.08998 * 109.47123 * 299.99881 * 6 5 4 39 39 H 1.09002 * 109.46301 * 294.17763 * 8 7 6 40 40 H 1.08994 * 109.46532 * 54.15285 * 8 7 6 41 41 H 1.08999 * 109.49813 * 179.11778 * 9 8 7 42 42 H 1.09000 * 109.50391 * 299.19809 * 9 8 7 43 43 H 1.09004 * 109.52283 * 182.43909 * 10 9 8 44 44 H 1.09002 * 109.52862 * 62.24965 * 10 9 8 45 45 H 1.09001 * 109.47671 * 305.19923 * 13 11 10 46 46 H 1.08998 * 109.47454 * 185.19921 * 13 11 10 47 47 H 0.97005 * 119.99811 * 0.02562 * 14 13 11 48 48 H 1.09004 * 109.46762 * 300.00389 * 17 15 14 49 49 H 1.08998 * 109.46924 * 59.99727 * 17 15 14 50 50 H 0.96996 * 120.00680 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.46561 * 65.82484 * 27 7 6 52 52 H 1.09001 * 109.45564 * 305.84661 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8641 1.8214 0.9294 5 6 3.3660 3.2424 0.9297 6 6 3.0709 3.8872 2.2854 7 7 3.5596 5.2725 2.2855 8 6 5.0240 5.3139 2.1844 9 6 5.4859 6.7659 2.0409 10 6 5.0168 7.5682 3.2577 11 6 3.4927 7.4689 3.3680 12 1 3.0337 7.9100 2.4833 13 6 3.0210 8.2183 4.6157 14 7 3.3017 9.6480 4.4620 15 6 2.9649 10.5100 5.4417 16 8 2.4299 10.1022 6.4509 17 6 3.2531 11.9807 5.2834 18 16 2.6884 12.8682 6.7562 19 6 3.1357 14.5137 6.3122 20 1 3.6113 14.7062 5.3618 21 6 2.8777 15.5622 7.1842 22 7 3.2113 16.7915 6.8523 23 14 2.0557 15.2292 8.8282 24 1 3.0939 14.9585 9.8549 25 1 1.2576 16.4147 9.2318 26 1 1.1621 14.0495 8.7050 27 6 3.0887 5.9966 3.4731 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7065 2.1087 -0.7661 34 1 3.1902 1.1333 1.6953 35 1 2.8640 3.8052 0.1427 36 1 4.4413 3.2480 0.7511 37 1 3.5729 3.3244 3.0724 38 1 1.9957 3.8816 2.4640 39 1 5.4625 4.8804 3.0833 40 1 5.3442 4.7433 1.3127 41 1 6.5738 6.7974 1.9816 42 1 5.0594 7.1956 1.1345 43 1 5.3061 8.6124 3.1392 44 1 5.4745 7.1627 4.1601 45 1 3.5483 7.8366 5.4900 46 1 1.9488 8.0704 4.7448 47 1 3.7259 9.9747 3.6531 48 1 4.3258 12.1294 5.1589 49 1 2.7295 12.3612 4.4064 50 1 3.0307 17.5244 7.4615 51 1 3.5363 5.5600 4.3659 52 1 2.0031 5.9216 3.5372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480243640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -49.159839 kcal Electronic energy + Delta-G solvation = -26061.284527 eV Core-core repulsion = 22378.943409 eV Total energy + Delta-G solvation = -3682.341118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.96559 -38.97556 -36.97310 -35.53286 -33.83111 -32.43001 -32.13989 -31.71933 -29.42557 -28.51106 -25.95859 -25.55410 -24.83965 -23.16201 -22.53717 -21.01019 -20.50631 -20.15389 -19.86215 -17.86221 -16.61183 -16.35601 -15.95973 -15.71179 -15.48210 -15.23656 -14.96479 -14.85216 -14.75005 -14.48436 -14.21549 -13.83364 -13.75047 -13.60679 -13.23121 -13.01015 -12.89746 -12.78146 -12.63986 -12.52257 -12.27760 -12.01975 -11.83659 -11.49299 -11.46027 -11.42117 -11.25698 -11.17230 -11.00046 -10.92785 -10.78011 -10.60894 -10.55622 -9.84782 -9.51328 -9.38830 -9.00596 -8.93208 -8.69810 -8.48745 -6.90538 -6.27999 -3.99618 1.78456 2.77852 3.00616 3.27329 3.34065 3.49474 3.51722 3.72524 4.29941 4.34160 4.40135 4.40839 4.53199 4.56020 4.68643 4.71783 4.76898 4.84207 4.86812 4.92467 4.98938 5.01996 5.08369 5.11152 5.17270 5.23470 5.26854 5.31430 5.35105 5.38585 5.43728 5.45005 5.54272 5.57496 5.59211 5.66649 5.67913 5.74146 5.75712 5.79355 5.83648 5.93470 6.03087 6.10695 6.26642 6.40697 6.54870 6.70793 6.71764 7.63929 7.95087 8.42591 8.51994 9.18307 10.81275 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.001474 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.421329 B =18985.094894 C =19601.790655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.087 4.087 6 C 0.061 3.939 7 N -0.538 5.538 8 C 0.052 3.948 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.095 4.095 12 H 0.087 0.913 13 C 0.127 3.873 14 N -0.735 5.735 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.065 3.935 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.399 0.601 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.271 0.729 51 H 0.037 0.963 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -32.488 -15.783 36.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.174 4.174 4 C -0.178 4.178 5 C -0.125 4.125 6 C -0.067 4.067 7 N -0.262 5.262 8 C -0.076 4.076 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.105 0.895 13 C 0.003 3.997 14 N -0.389 5.389 15 C 0.316 3.684 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.064 4.064 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.233 0.767 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.080 0.920 51 H 0.055 0.945 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.690 -32.746 -14.446 35.798 hybrid contribution 0.925 0.393 -0.149 1.016 sum 1.615 -32.353 -14.595 35.530 Atomic orbital electron populations 1.21717 0.95085 1.01662 1.02148 1.20650 0.96244 0.94352 1.02180 1.22909 0.98137 0.97259 0.99130 1.22813 0.98909 0.96909 0.99138 1.20697 1.01336 0.92601 0.97850 1.22034 1.00590 0.87600 0.96476 1.61877 1.10471 1.13847 1.40023 1.22169 0.87326 0.97475 1.00652 1.21584 1.00294 0.94599 0.98974 1.21672 0.94806 1.00721 0.98393 1.21402 0.96442 0.95060 0.98481 0.89470 1.21247 1.00879 0.80375 0.97245 1.45941 1.64506 1.07120 1.21351 1.20272 0.77633 0.87808 0.82708 1.90697 1.41170 1.79055 1.28634 1.23278 1.05366 0.93547 1.05279 1.84784 1.80290 1.04538 1.21993 1.22325 1.46335 0.89860 1.08384 0.89393 1.24704 0.94260 0.94027 0.98254 1.69937 1.45713 0.99003 1.37092 0.86739 0.81257 0.79941 0.83937 1.19219 1.19936 1.15926 1.21990 1.00503 0.93033 0.90828 0.92621 0.92560 0.92567 0.91238 0.91737 0.87312 0.87597 0.90658 0.91086 0.94817 0.90575 0.94948 0.90556 0.91420 0.90959 0.91341 0.91912 0.91701 0.91501 0.76660 0.88542 0.88464 0.91953 0.94478 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.10 -0.47 6.38 -27.88 -0.18 -0.65 16 3 C -0.16 -0.89 9.12 -36.03 -0.33 -1.21 16 4 C -0.16 -0.92 9.12 -36.03 -0.33 -1.25 16 5 C -0.09 -0.52 5.59 -27.89 -0.16 -0.67 16 6 C 0.06 0.40 4.94 -3.83 -0.02 0.38 16 7 N -0.54 -4.03 4.66 -234.67 -1.09 -5.12 16 8 C 0.05 0.35 5.29 -3.83 -0.02 0.33 16 9 C -0.12 -0.79 6.09 -26.65 -0.16 -0.96 16 10 C -0.12 -0.91 5.13 -26.61 -0.14 -1.05 16 11 C -0.09 -0.78 2.39 -90.54 -0.22 -1.00 16 12 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 13 C 0.13 1.40 5.07 -4.04 -0.02 1.38 16 14 N -0.73 -9.27 5.31 -60.29 -0.32 -9.59 16 15 C 0.53 9.44 7.85 -10.98 -0.09 9.35 16 16 O -0.52 -11.34 15.86 5.56 0.09 -11.25 16 17 C -0.12 -2.41 6.16 36.01 0.22 -2.18 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -15.10 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 23 Si 0.86 21.89 27.74 -169.99 -4.71 17.17 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.06 0.51 4.74 -3.84 -0.02 0.49 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 33 H 0.11 0.60 7.84 -52.49 -0.41 0.19 16 34 H 0.11 0.57 7.84 -52.48 -0.41 0.16 16 35 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 36 H 0.07 0.41 6.43 -51.93 -0.33 0.07 16 37 H 0.03 0.23 8.12 -51.93 -0.42 -0.20 16 38 H 0.08 0.52 7.99 -51.93 -0.41 0.11 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.47 6.21 -51.93 -0.32 0.15 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.53 7.27 -51.93 -0.38 0.15 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.40 3.96 7.68 -40.82 -0.31 3.65 16 48 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 49 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 50 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 LS Contribution 423.65 15.07 6.38 6.38 Total: -1.00 -33.29 423.65 -11.47 -44.76 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -9.73 Total: -1.43 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -0.87 Total: -9.41 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.64 Total: -40.59 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.29 -11.47 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.401 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds