Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47222 * 2 1 4 4 C 1.30999 * 120.00025 * 124.99639 * 3 2 1 5 5 C 1.50699 * 120.00025 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47145 * 125.00447 * 5 4 3 7 7 N 1.46902 * 109.47163 * 180.02562 * 6 5 4 8 8 C 1.46847 * 110.99726 * 294.20857 * 7 6 5 9 9 C 1.53040 * 109.52065 * 174.16169 * 8 7 6 10 10 C 1.53116 * 109.27835 * 59.18106 * 9 8 7 11 11 C 1.53126 * 109.15940 * 302.34355 * 10 9 8 12 12 H 1.08998 * 109.53686 * 297.69628 * 11 10 9 13 13 C 1.52998 * 109.50194 * 177.59659 * 11 10 9 14 14 N 1.46506 * 109.47237 * 65.19583 * 13 11 10 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 11 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 S 1.80989 * 109.47203 * 180.02562 * 17 15 14 19 19 C 1.76206 * 100.00010 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99621 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00085 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00415 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.47144 * 90.00296 * 23 21 19 25 25 H 1.48502 * 109.47646 * 210.00409 * 23 21 19 26 26 H 1.48502 * 109.47363 * 330.00583 * 23 21 19 27 27 C 1.46844 * 110.99885 * 169.99993 * 7 6 5 28 28 H 1.08999 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47084 * 299.99752 * 1 2 3 30 30 H 1.09001 * 109.47574 * 60.00054 * 1 2 3 31 31 H 1.09001 * 109.46875 * 239.99586 * 2 1 3 32 32 H 1.09004 * 109.46689 * 120.00100 * 2 1 3 33 33 H 1.07999 * 119.99797 * 305.00180 * 3 2 1 34 34 H 1.08005 * 119.99775 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46998 * 5.00544 * 5 4 3 36 36 H 1.08998 * 109.47013 * 245.00396 * 5 4 3 37 37 H 1.09001 * 109.47093 * 60.00155 * 6 5 4 38 38 H 1.08998 * 109.47123 * 299.99881 * 6 5 4 39 39 H 1.09002 * 109.46301 * 294.17763 * 8 7 6 40 40 H 1.08994 * 109.46532 * 54.15285 * 8 7 6 41 41 H 1.08999 * 109.49813 * 179.11778 * 9 8 7 42 42 H 1.09000 * 109.50391 * 299.19809 * 9 8 7 43 43 H 1.09004 * 109.52283 * 182.43909 * 10 9 8 44 44 H 1.09002 * 109.52862 * 62.24965 * 10 9 8 45 45 H 1.09001 * 109.47671 * 305.19923 * 13 11 10 46 46 H 1.08998 * 109.47454 * 185.19921 * 13 11 10 47 47 H 0.97005 * 119.99811 * 0.02562 * 14 13 11 48 48 H 1.09004 * 109.46762 * 300.00389 * 17 15 14 49 49 H 1.08998 * 109.46924 * 59.99727 * 17 15 14 50 50 H 0.96996 * 120.00680 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.46561 * 65.82484 * 27 7 6 52 52 H 1.09001 * 109.45564 * 305.84661 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8641 1.8214 0.9294 5 6 3.3660 3.2424 0.9297 6 6 3.0709 3.8872 2.2854 7 7 3.5596 5.2725 2.2855 8 6 5.0240 5.3139 2.1844 9 6 5.4859 6.7659 2.0409 10 6 5.0168 7.5682 3.2577 11 6 3.4927 7.4689 3.3680 12 1 3.0337 7.9100 2.4833 13 6 3.0210 8.2183 4.6157 14 7 3.3017 9.6480 4.4620 15 6 2.9649 10.5100 5.4417 16 8 2.4299 10.1022 6.4509 17 6 3.2531 11.9807 5.2834 18 16 2.6884 12.8682 6.7562 19 6 3.1357 14.5137 6.3122 20 1 3.6113 14.7062 5.3618 21 6 2.8777 15.5622 7.1842 22 7 3.2113 16.7915 6.8523 23 14 2.0557 15.2292 8.8282 24 1 3.0939 14.9585 9.8549 25 1 1.2576 16.4147 9.2318 26 1 1.1621 14.0495 8.7050 27 6 3.0887 5.9966 3.4731 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7065 2.1087 -0.7661 34 1 3.1902 1.1333 1.6953 35 1 2.8640 3.8052 0.1427 36 1 4.4413 3.2480 0.7511 37 1 3.5729 3.3244 3.0724 38 1 1.9957 3.8816 2.4640 39 1 5.4625 4.8804 3.0833 40 1 5.3442 4.7433 1.3127 41 1 6.5738 6.7974 1.9816 42 1 5.0594 7.1956 1.1345 43 1 5.3061 8.6124 3.1392 44 1 5.4745 7.1627 4.1601 45 1 3.5483 7.8366 5.4900 46 1 1.9488 8.0704 4.7448 47 1 3.7259 9.9747 3.6531 48 1 4.3258 12.1294 5.1589 49 1 2.7295 12.3612 4.4064 50 1 3.0307 17.5244 7.4615 51 1 3.5363 5.5600 4.3659 52 1 2.0031 5.9216 3.5372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480243640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -69.464502 kcal Electronic energy + Delta-G solvation = -26062.165003 eV Core-core repulsion = 22378.943409 eV Total energy + Delta-G solvation = -3683.221594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.91690 -40.02529 -37.51737 -36.36183 -34.68306 -34.61247 -32.70389 -32.55433 -30.73966 -29.05341 -27.87515 -26.70634 -25.44772 -23.70873 -23.11467 -21.80229 -21.59294 -20.74601 -20.42826 -19.85204 -17.88533 -17.43817 -17.08749 -16.84605 -16.63517 -16.30483 -15.92284 -15.63271 -15.46103 -15.28468 -15.19176 -14.99544 -14.82184 -14.64941 -14.20667 -14.15736 -13.92234 -13.57831 -13.36434 -13.30811 -13.08961 -13.03814 -12.97026 -12.82994 -12.61817 -12.48042 -12.06551 -11.98946 -11.86747 -11.85614 -11.65484 -11.52548 -11.35954 -11.23009 -11.16775 -10.99274 -10.53232 -10.13006 -9.83282 -9.28100 -8.99251 -8.51234 -6.22078 0.99469 1.31581 1.34612 1.47234 1.56365 1.57245 2.21664 2.26550 2.71643 2.87178 2.92135 3.68643 3.76214 3.86783 3.90991 3.92729 4.11765 4.17625 4.20537 4.23543 4.28156 4.38626 4.46766 4.47399 4.48631 4.50206 4.53398 4.59128 4.60850 4.66179 4.75410 4.79673 4.88633 4.91470 5.00042 5.05859 5.09331 5.12783 5.17628 5.19586 5.21255 5.28232 5.37105 5.39235 5.50544 5.71079 5.83524 5.96699 6.11769 6.12658 6.15536 6.47063 6.94122 7.19640 8.61206 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.001474 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.421329 B =18985.094894 C =19601.790655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.160 4.160 4 C -0.164 4.164 5 C -0.080 4.080 6 C 0.063 3.937 7 N -0.543 5.543 8 C 0.051 3.949 9 C -0.112 4.112 10 C -0.118 4.118 11 C -0.081 4.081 12 H 0.091 0.909 13 C 0.129 3.871 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C 0.066 3.934 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.416 0.584 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.277 0.723 51 H 0.034 0.966 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -34.170 -16.563 38.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.178 4.178 4 C -0.183 4.183 5 C -0.118 4.118 6 C -0.065 4.065 7 N -0.267 5.267 8 C -0.077 4.077 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.100 4.100 12 H 0.109 0.891 13 C 0.005 3.995 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.262 4.262 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.063 4.063 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.253 0.747 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.086 0.914 51 H 0.052 0.948 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.911 -34.444 -15.282 37.693 hybrid contribution 0.920 0.813 -0.058 1.229 sum 1.831 -33.631 -15.341 37.010 Atomic orbital electron populations 1.21716 0.94957 1.02056 1.01868 1.20673 0.96347 0.93925 1.02544 1.23024 0.97993 0.97727 0.99049 1.22849 0.99133 0.96892 0.99388 1.20616 1.01446 0.92547 0.97141 1.22022 1.00344 0.87218 0.96886 1.61894 1.10948 1.14272 1.39583 1.22208 0.86865 0.97697 1.00903 1.21557 1.00922 0.94247 0.98295 1.21676 0.94128 1.01089 0.98692 1.21274 0.96891 0.94922 0.96945 0.89090 1.21345 1.00574 0.79128 0.98480 1.45715 1.62673 1.07347 1.20545 1.19955 0.77543 0.87472 0.83042 1.90689 1.43572 1.79470 1.30584 1.23273 1.06418 0.94089 1.02459 1.84715 1.80951 1.03185 1.26165 1.22470 1.45835 0.91959 1.07453 0.91923 1.25541 0.94837 0.93871 1.01567 1.70013 1.46939 0.99939 1.38619 0.85879 0.80520 0.80138 0.79903 1.18690 1.18298 1.16132 1.21948 1.00574 0.92741 0.91016 0.91921 0.93150 0.92525 0.90675 0.91564 0.87373 0.87223 0.91255 0.90742 0.94816 0.90917 0.95281 0.89668 0.90417 0.90995 0.91053 0.92494 0.92422 0.92088 0.74698 0.86802 0.86789 0.91367 0.94824 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.52 16 2 C -0.10 -0.84 6.38 29.85 0.19 -0.65 16 3 C -0.16 -1.65 9.12 25.65 0.23 -1.42 16 4 C -0.16 -1.71 9.12 25.65 0.23 -1.47 16 5 C -0.08 -0.85 5.59 29.85 0.17 -0.68 16 6 C 0.06 0.75 4.94 86.30 0.43 1.18 16 7 N -0.54 -7.25 4.66 -896.37 -4.17 -11.42 16 8 C 0.05 0.60 5.29 86.33 0.46 1.06 16 9 C -0.11 -1.28 6.09 30.65 0.19 -1.09 16 10 C -0.12 -1.58 5.13 30.68 0.16 -1.42 16 11 C -0.08 -1.18 2.39 -10.74 -0.03 -1.21 16 12 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 13 C 0.13 2.63 5.07 86.38 0.44 3.07 16 14 N -0.71 -16.43 5.31 -463.05 -2.46 -18.89 16 15 C 0.53 18.26 7.85 87.66 0.69 18.95 16 16 O -0.56 -24.22 15.86 -3.03 -0.05 -24.26 16 17 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 18 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 19 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.78 5.50 84.86 0.47 3.24 16 22 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 23 Si 0.91 45.11 27.74 68.60 1.90 47.02 16 24 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 27 C 0.07 0.94 4.74 86.33 0.41 1.35 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.55 7.79 -2.38 -0.02 0.53 16 33 H 0.11 1.11 7.84 -2.91 -0.02 1.09 16 34 H 0.11 1.05 7.84 -2.91 -0.02 1.03 16 35 H 0.07 0.83 7.79 -2.39 -0.02 0.81 16 36 H 0.07 0.74 6.43 -2.39 -0.02 0.72 16 37 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 38 H 0.07 0.92 7.99 -2.39 -0.02 0.90 16 39 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.09 0.87 6.21 -2.39 -0.01 0.85 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.91 7.27 -2.39 -0.02 0.90 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.42 7.07 7.68 -92.70 -0.71 6.36 16 48 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 49 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 50 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 52 H 0.08 1.13 8.01 -2.39 -0.02 1.11 16 Total: -1.00 -71.32 423.65 0.46 -70.87 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.12 Total: 15.85 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.86 Total: -13.55 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -6.33 Total: -85.92 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.02 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -71.32 0.46 -70.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480243640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.402 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds