Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53785 * 113.61013 * 2 1 4 4 C 1.53779 * 87.08334 * 219.93560 * 3 2 1 5 5 C 1.52995 * 113.61377 * 139.98070 * 4 3 2 6 6 N 1.46906 * 109.46978 * 176.53341 * 5 4 3 7 7 C 1.46901 * 110.99793 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.49599 * 304.92764 * 8 7 6 10 10 C 1.53041 * 109.49533 * 184.83870 * 8 7 6 11 11 C 1.53040 * 109.53822 * 178.68305 * 10 8 7 12 12 C 1.53188 * 109.31221 * 61.36272 * 11 10 8 13 13 N 1.46921 * 108.77702 * 305.36511 * 12 11 10 14 14 C 1.34780 * 120.63184 * 233.63135 * 13 12 11 15 15 O 1.21284 * 119.99819 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.99839 * 359.97438 * 14 13 12 17 17 S 1.80997 * 109.46971 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00038 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99761 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99562 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46848 * 89.99993 * 22 20 18 24 24 H 1.48502 * 109.46929 * 209.99736 * 22 20 18 25 25 H 1.48497 * 109.47167 * 329.99970 * 22 20 18 26 26 C 1.46923 * 118.73736 * 53.60751 * 13 12 11 27 27 C 1.53788 * 87.16855 * 25.39309 * 4 3 2 28 28 H 1.09000 * 109.47357 * 59.99363 * 1 2 3 29 29 H 1.09000 * 109.46488 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46959 * 299.99584 * 1 2 3 31 31 H 1.08995 * 112.85305 * 131.19915 * 2 1 3 32 32 H 1.09008 * 113.60822 * 105.38943 * 3 2 1 33 33 H 1.09000 * 113.69324 * 334.50184 * 3 2 1 34 34 H 1.09001 * 113.61525 * 270.80473 * 4 3 2 35 35 H 1.08995 * 109.46859 * 56.53633 * 5 4 3 36 36 H 1.09002 * 109.47639 * 296.53301 * 5 4 3 37 37 H 1.00899 * 110.99995 * 56.04730 * 6 5 4 38 38 H 1.09002 * 109.47401 * 59.99808 * 7 6 5 39 39 H 1.09001 * 109.46874 * 299.99821 * 7 6 5 40 40 H 1.09003 * 109.45816 * 298.70386 * 10 8 7 41 41 H 1.09002 * 109.46477 * 58.65870 * 10 8 7 42 42 H 1.08996 * 109.49735 * 301.40929 * 11 10 8 43 43 H 1.09000 * 109.52294 * 181.33113 * 11 10 8 44 44 H 1.09008 * 109.58479 * 185.57747 * 12 11 10 45 45 H 1.08994 * 109.58832 * 65.15577 * 12 11 10 46 46 H 1.08991 * 109.46929 * 299.99653 * 16 14 13 47 47 H 1.08993 * 109.47249 * 60.00019 * 16 14 13 48 48 H 0.96998 * 120.00121 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.58550 * 186.60523 * 26 13 12 50 50 H 1.08996 * 109.58373 * 66.18439 * 26 13 12 51 51 H 1.08997 * 113.61596 * 89.16039 * 27 4 3 52 52 H 1.08996 * 113.61251 * 220.06078 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1936 0.8658 -0.9859 5 6 3.5488 1.8467 -2.1050 6 7 4.6113 1.2719 -2.9410 7 6 4.9794 2.1885 -4.0284 8 6 6.0855 1.5564 -4.8756 9 1 6.9245 1.2851 -4.2348 10 6 6.5535 2.5579 -5.9340 11 6 7.6826 1.9385 -6.7609 12 6 7.1601 0.6883 -7.4756 13 7 6.5761 -0.2178 -6.4773 14 6 6.9791 -1.5014 -6.3961 15 8 6.4896 -2.2393 -5.5673 16 6 8.0378 -2.0196 -7.3350 17 16 8.3592 -3.7647 -6.9777 18 6 9.5970 -4.1014 -8.1857 19 1 9.9233 -3.3205 -8.8566 20 6 10.1520 -5.3704 -8.2755 21 7 9.7532 -6.3225 -7.4587 22 14 11.4648 -5.7271 -9.5556 23 1 12.8056 -5.4522 -8.9794 24 1 11.3841 -7.1528 -9.9634 25 1 11.2484 -4.8600 -10.7415 26 6 5.5450 0.3020 -5.5690 27 6 2.1498 -0.1862 -1.3969 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9533 -0.6616 0.7557 32 1 2.5637 1.7030 0.9630 33 1 1.4959 2.1713 -0.4297 34 1 4.0724 0.4421 -0.4996 35 1 3.8956 2.7840 -1.6701 36 1 2.6666 2.0346 -2.7171 37 1 4.3383 0.3709 -3.3040 38 1 5.3363 3.1281 -3.6065 39 1 4.1072 2.3791 -4.6537 40 1 5.7197 2.8099 -6.5893 41 1 6.9160 3.4616 -5.4440 42 1 8.5068 1.6636 -6.1028 43 1 8.0317 2.6604 -7.4991 44 1 7.9833 0.1882 -7.9859 45 1 6.3977 0.9736 -8.2004 46 1 7.6930 -1.9166 -8.3638 47 1 8.9551 -1.4467 -7.2001 48 1 10.1413 -7.2093 -7.5213 49 1 5.3025 -0.4530 -4.8211 50 1 4.6508 0.5557 -6.1383 51 1 1.4999 0.1379 -2.2097 52 1 2.5707 -1.1783 -1.5601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480273518.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -57.885189 kcal Electronic energy + Delta-G solvation = -27159.611825 eV Core-core repulsion = 23476.892348 eV Total energy + Delta-G solvation = -3682.719478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.24148 -40.24694 -38.81652 -36.70425 -34.59288 -34.11540 -32.58175 -31.23187 -30.34932 -27.73713 -27.35081 -26.58572 -26.15282 -25.10897 -22.71053 -21.96821 -21.33859 -20.37171 -20.24968 -19.48809 -18.19811 -17.27325 -16.89171 -16.81506 -16.61760 -16.41565 -15.87067 -15.66366 -15.63446 -15.26208 -14.91265 -14.53519 -14.52893 -14.35334 -14.12898 -14.07807 -13.82265 -13.74078 -13.43063 -13.33112 -13.16553 -13.12425 -12.89496 -12.68156 -12.47111 -12.35232 -12.09788 -11.87436 -11.82066 -11.71080 -11.59830 -11.50207 -11.40159 -11.14824 -11.00373 -10.88779 -10.78320 -10.26818 -9.65565 -9.34628 -8.68260 -8.34958 -6.13670 1.25014 1.42283 1.45448 1.56034 1.57303 2.10932 2.26970 2.98973 3.13614 3.24785 3.62336 3.66929 3.74972 3.81314 3.83238 3.87474 3.94051 4.03735 4.08071 4.23829 4.26633 4.35543 4.41857 4.45228 4.49669 4.56449 4.63047 4.66045 4.71489 4.74143 4.81634 4.84002 4.85578 4.86991 4.91661 4.94638 4.95721 5.05158 5.10003 5.17452 5.20420 5.26205 5.28150 5.40996 5.47008 5.48490 5.58661 5.66119 6.15017 6.19223 6.29725 6.37998 7.05897 7.14495 8.74339 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.002130 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.944562 B =13142.463308 C =14919.431232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.111 4.111 5 C 0.075 3.925 6 N -0.707 5.707 7 C 0.074 3.926 8 C -0.092 4.092 9 H 0.059 0.941 10 C -0.106 4.106 11 C -0.130 4.130 12 C 0.096 3.904 13 N -0.606 5.606 14 C 0.530 3.470 15 O -0.567 6.567 16 C -0.122 4.122 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.115 3.885 27 C -0.140 4.140 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.337 0.663 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 25.327 6.932 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C -0.159 4.159 4 C -0.130 4.130 5 C -0.053 4.053 6 N -0.339 5.339 7 C -0.055 4.055 8 C -0.112 4.112 9 H 0.077 0.923 10 C -0.144 4.144 11 C -0.168 4.168 12 C -0.026 4.026 13 N -0.340 5.340 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.273 4.273 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.007 4.007 27 C -0.177 4.177 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.525 24.304 8.611 29.594 hybrid contribution 0.634 -0.292 -1.885 2.010 sum -13.891 24.012 6.727 28.544 Atomic orbital electron populations 1.21705 0.94165 1.01751 1.02085 1.22482 0.96125 0.97794 0.97181 1.22961 0.97190 0.96535 0.99199 1.22501 0.96910 0.96761 0.96786 1.21915 0.92051 0.97635 0.93743 1.60503 1.43114 1.06369 1.23897 1.21918 0.96475 0.95958 0.91165 1.21473 0.98494 0.94662 0.96563 0.92281 1.21518 0.98631 0.97546 0.96733 1.21907 0.98273 0.96525 1.00133 1.22088 0.99299 0.90779 0.90390 1.48090 1.40601 1.08947 1.36325 1.20155 0.82309 0.82185 0.83559 1.90670 1.57829 1.57398 1.38643 1.23356 1.00653 1.01054 1.02264 1.85604 1.52270 1.05412 1.49292 1.23191 1.25234 1.00126 1.20756 0.89883 1.26158 0.99556 0.94711 0.98831 1.70189 1.43011 1.03327 1.38265 0.84937 0.77403 0.77746 0.77788 1.19291 1.20275 1.18064 1.21707 0.90082 0.96141 0.92788 1.23171 0.98133 0.98926 0.97503 0.92458 0.92891 0.91845 0.89808 0.91122 0.89233 0.90016 0.90606 0.94633 0.84449 0.89701 0.93933 0.90116 0.89930 0.92802 0.87820 0.89629 0.89055 0.87501 0.87688 0.91989 0.91589 0.90326 0.89963 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.72 71.98 0.70 -1.00 16 2 C -0.12 -1.68 4.36 -10.21 -0.04 -1.73 16 3 C -0.12 -1.55 7.20 31.12 0.22 -1.33 16 4 C -0.11 -1.79 3.89 -10.27 -0.04 -1.83 16 5 C 0.08 1.15 5.51 86.30 0.48 1.63 16 6 N -0.71 -13.41 6.50 -513.88 -3.34 -16.75 16 7 C 0.07 1.14 5.15 86.30 0.44 1.58 16 8 C -0.09 -1.70 2.55 -10.72 -0.03 -1.73 16 9 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 10 C -0.11 -1.38 5.17 30.62 0.16 -1.22 16 11 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 12 C 0.10 1.87 6.34 86.36 0.55 2.42 16 13 N -0.61 -17.04 2.97 -818.93 -2.43 -19.47 16 14 C 0.53 20.98 7.72 87.66 0.68 21.66 16 15 O -0.57 -27.65 15.28 -3.04 -0.05 -27.69 16 16 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 18 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16 22 Si 1.00 43.91 29.55 68.60 2.03 45.93 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C 0.12 2.76 5.35 86.36 0.46 3.23 16 27 C -0.14 -2.33 7.20 31.18 0.22 -2.10 16 28 H 0.06 0.66 7.96 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 33 H 0.09 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 0.50 7.88 -2.39 -0.02 0.48 16 37 H 0.34 7.25 7.12 -89.69 -0.64 6.61 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.75 5.93 -2.38 -0.01 1.74 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.11 4.00 7.94 -2.40 -0.02 3.99 16 47 H 0.10 3.98 7.69 -2.40 -0.02 3.96 16 48 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 49 H 0.07 1.99 5.81 -2.38 -0.01 1.97 16 50 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.08 1.28 7.75 -2.39 -0.02 1.26 16 52 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -75.93 417.66 0.99 -74.95 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.24 Total: 25.98 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 5.42 Total: -16.66 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -5.49 Total: -92.62 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -75.93 0.99 -74.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480273518.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.062 kcal (2) G-P(sol) polarization free energy of solvation -75.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds