Wall clock time and date at job start Sat Apr 11 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.53000 * 109.46769 * 66.05138 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47084 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.30010 * 305.00298 * 9 8 6 11 11 C 1.52924 * 109.30243 * 185.41691 * 9 8 6 12 12 C 1.53263 * 108.71438 * 188.74216 * 11 9 8 13 13 C 1.53060 * 108.25138 * 67.81375 * 12 11 9 14 14 C 1.50182 * 109.89203 * 311.03404 * 13 12 11 15 15 O 1.21282 * 118.24576 * 197.59990 * 14 13 12 16 16 N 1.33354 * 123.50455 * 17.58190 * 14 13 12 17 17 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 18 18 C 1.50702 * 109.46939 * 293.95226 * 17 2 1 19 19 O 1.21289 * 120.00260 * 0.02562 * 18 17 2 20 20 N 1.34780 * 120.00014 * 179.97438 * 18 17 2 21 21 C 1.37090 * 120.00014 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00404 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99758 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00520 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.47277 * 89.99856 * 25 23 21 27 27 H 1.48501 * 109.47245 * 209.99970 * 25 23 21 28 28 H 1.48496 * 109.47242 * 329.99800 * 25 23 21 29 29 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 30 30 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 32 32 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 33 33 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 34 34 H 1.09001 * 109.47194 * 299.99524 * 4 3 2 35 35 H 1.08992 * 109.47399 * 59.99697 * 4 3 2 36 36 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 37 37 H 1.08998 * 109.47224 * 300.00395 * 8 6 5 38 38 H 1.09002 * 109.47152 * 59.99840 * 8 6 5 39 39 H 1.08996 * 109.60122 * 308.69752 * 11 9 8 40 40 H 1.08999 * 109.60272 * 69.17949 * 11 9 8 41 41 H 1.09003 * 109.81455 * 308.10077 * 12 11 9 42 42 H 1.08999 * 109.73750 * 187.48285 * 12 11 9 43 43 H 1.09001 * 109.40827 * 190.90478 * 13 12 11 44 44 H 1.09000 * 109.40199 * 71.16423 * 13 12 11 45 45 H 0.96997 * 117.94375 * 177.75698 * 16 14 13 46 46 H 1.09003 * 109.47188 * 53.95311 * 17 2 1 47 47 H 1.08993 * 109.47221 * 173.95234 * 17 2 1 48 48 H 0.97004 * 119.99727 * 0.02562 * 20 18 17 49 49 H 0.96996 * 120.00280 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1560 3.4252 1.3181 6 6 1.9546 4.2243 2.3846 7 8 1.3388 3.8112 3.3442 8 6 2.4946 5.6313 2.3846 9 6 2.1295 6.3176 3.7024 10 1 1.0508 6.2644 3.8495 11 6 2.5600 7.7839 3.6448 12 6 2.3912 8.4010 5.0375 13 6 3.4145 7.7556 5.9750 14 6 3.3616 6.2609 5.8381 15 8 3.8558 5.5862 6.7164 16 7 2.8000 5.6361 4.8025 17 6 1.9954 -0.7659 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0046 -2.5832 -0.0036 20 7 2.0179 -3.1179 -1.9035 21 6 1.6922 -4.4411 -1.7534 22 1 1.1300 -4.7643 -0.8898 23 6 2.0855 -5.3664 -2.7124 24 7 2.7701 -4.9734 -3.7630 25 14 1.6411 -7.1693 -2.5083 26 1 0.3287 -7.4316 -3.1520 27 1 2.6834 -8.0116 -3.1482 28 1 1.5578 -7.4980 -1.0626 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9274 -0.8309 33 1 3.0797 1.3444 -0.1083 34 1 0.5472 2.0844 1.4266 35 1 2.0658 1.5014 2.1492 36 1 2.6482 3.7559 0.5504 37 1 3.5789 5.6043 2.2768 38 1 2.0606 6.1871 1.5534 39 1 3.6041 7.8467 3.3382 40 1 1.9342 8.3210 2.9321 41 1 1.3835 8.2099 5.4067 42 1 2.5659 9.4758 4.9876 43 1 3.1880 8.0330 7.0046 44 1 4.4136 8.1076 5.7181 45 1 2.8405 4.6672 4.7798 46 1 1.5610 -0.3871 -2.0629 47 1 3.0796 -0.6610 -1.1758 48 1 2.5232 -2.8277 -2.6790 49 1 3.0443 -5.6193 -4.4327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480890318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:30 Heat of formation + Delta-G solvation = -112.686620 kcal Electronic energy + Delta-G solvation = -28723.430716 eV Core-core repulsion = 24492.041656 eV Total energy + Delta-G solvation = -4231.389061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96606 -39.76664 -38.69169 -37.20847 -36.73055 -34.79049 -33.83585 -33.63461 -31.85617 -31.27040 -29.79233 -28.09507 -27.59357 -25.37962 -24.27923 -23.49705 -22.74809 -21.32670 -20.64342 -19.57565 -19.19776 -17.87672 -17.70818 -17.33449 -16.63155 -16.52802 -16.06891 -15.85181 -15.66225 -15.19336 -14.95879 -14.64364 -14.52018 -14.21903 -14.19271 -14.10706 -13.74319 -13.59278 -13.41197 -13.27042 -13.14742 -12.49690 -12.16629 -12.08339 -11.95220 -11.77347 -11.55114 -11.54508 -11.51935 -11.44488 -11.31102 -11.10595 -10.96505 -10.39817 -10.26879 -10.22822 -9.99893 -9.49657 -9.38695 -9.32122 -8.51377 -8.01520 -7.92243 -6.43455 -3.84193 2.26834 2.37759 2.73819 2.98306 3.16932 3.25942 3.32157 3.87520 3.92883 3.96826 4.11194 4.13912 4.25803 4.30305 4.47533 4.59945 4.66622 4.77384 4.87978 4.91370 4.99236 5.02440 5.08102 5.21060 5.22552 5.32623 5.33650 5.35828 5.39272 5.58723 5.63985 5.64567 5.77092 5.83139 5.88355 5.95518 6.10894 6.24672 6.51746 6.55400 7.07291 7.12705 7.18477 7.27855 7.53944 7.85433 7.98059 8.04576 8.59877 9.16605 9.52252 10.04076 10.74246 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030855 B = 0.001485 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.260321 B =18850.511776 C =19187.421636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.727 5.727 6 C 0.508 3.492 7 O -0.535 6.535 8 C -0.157 4.157 9 C 0.156 3.844 10 H 0.085 0.915 11 C -0.134 4.134 12 C -0.124 4.124 13 C -0.136 4.136 14 C 0.516 3.484 15 O -0.560 6.560 16 N -0.709 5.709 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.015 0.985 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.400 0.600 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.406 0.594 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 31.020 6.234 31.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.004 4.004 5 N -0.379 5.379 6 C 0.294 3.706 7 O -0.412 6.412 8 C -0.197 4.197 9 C 0.050 3.950 10 H 0.103 0.897 11 C -0.171 4.171 12 C -0.161 4.161 13 C -0.176 4.176 14 C 0.303 3.697 15 O -0.439 6.439 16 N -0.363 5.363 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.234 0.766 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.244 0.756 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.816 29.987 8.313 31.128 hybrid contribution 0.144 -0.575 -1.916 2.006 sum 0.960 29.412 6.397 30.115 Atomic orbital electron populations 1.22630 0.86446 1.04816 0.99069 1.61442 1.08970 1.10375 1.43143 1.22251 1.00756 0.89860 0.95572 1.21377 0.99681 0.80538 0.98783 1.45970 1.57746 1.14502 1.19633 1.20600 0.79926 0.87450 0.82598 1.90758 1.40752 1.75732 1.33978 1.22161 1.03837 0.93747 0.99994 1.20715 0.97947 0.91563 0.84747 0.89705 1.21958 1.03057 0.93782 0.98352 1.21644 0.99696 1.00538 0.94264 1.21666 1.01931 0.91387 1.02642 1.20207 0.77268 0.91146 0.81125 1.90780 1.47061 1.66708 1.39360 1.45688 1.56829 1.11625 1.22170 1.21868 1.00665 0.94275 0.91587 1.19699 0.85597 0.86590 0.85298 1.90496 1.43837 1.80074 1.31598 1.41858 1.49424 1.07373 1.21391 1.19707 1.32955 0.82256 1.07945 0.87873 1.25255 0.96760 1.00584 0.95297 1.69607 1.38044 1.35808 1.10899 0.85857 0.78002 0.81706 0.78726 1.20432 1.20928 1.19383 0.96631 0.88330 0.91866 0.94584 0.90290 0.91040 0.90120 0.76607 0.87928 0.87081 0.90532 0.89470 0.90851 0.90227 0.88207 0.88280 0.75581 0.93348 0.89325 0.77514 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.07 0.54 0.82 16 2 N -0.52 -8.16 4.50 -244.36 -1.10 -9.26 16 3 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 4 C 0.12 1.30 5.60 -4.04 -0.02 1.28 16 5 N -0.73 -5.52 5.56 -60.30 -0.33 -5.86 16 6 C 0.51 4.33 7.47 -10.98 -0.08 4.24 16 7 O -0.54 -6.91 14.53 5.56 0.08 -6.83 16 8 C -0.16 -0.66 5.35 -27.88 -0.15 -0.81 16 9 C 0.16 0.87 2.65 -68.37 -0.18 0.69 16 10 H 0.09 0.56 7.95 -51.93 -0.41 0.14 16 11 C -0.13 -0.38 5.28 -26.63 -0.14 -0.52 16 12 C -0.12 -0.43 6.04 -26.56 -0.16 -0.59 16 13 C -0.14 -0.80 6.02 -28.10 -0.17 -0.96 16 14 C 0.52 5.31 7.71 -11.87 -0.09 5.21 16 15 O -0.56 -8.56 17.78 5.56 0.10 -8.46 16 16 N -0.71 -6.42 5.00 -54.85 -0.27 -6.70 16 17 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 18 C 0.44 10.26 7.47 -10.98 -0.08 10.17 16 19 O -0.58 -15.36 13.91 5.55 0.08 -15.28 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 21 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 31 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 34 H 0.07 0.86 6.55 -51.93 -0.34 0.52 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.40 1.78 8.47 -40.82 -0.35 1.43 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.08 0.18 8.10 -51.93 -0.42 -0.24 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.07 0.29 8.13 -51.93 -0.42 -0.13 16 42 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.41 4.60 6.90 -40.82 -0.28 4.32 16 46 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 48 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 49 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -36.63 397.76 -8.39 -45.01 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.74 Total: 10.23 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -0.83 Total: 12.88 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -1.04 Total: -59.48 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: 0.26 Total: -30.57 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.63 -8.39 -45.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480890318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.674 kcal (2) G-P(sol) polarization free energy of solvation -36.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds