Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.53000 * 109.47637 * 269.72749 * 3 2 1 5 5 N 1.46896 * 109.47529 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99867 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46796 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99973 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00232 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00613 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99517 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00263 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00033 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99839 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47592 * 59.99672 * 14 12 10 16 16 H 1.48507 * 109.47077 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47115 * 299.99739 * 14 12 10 18 18 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 19 19 O 1.21283 * 119.99649 * 180.02562 * 18 2 1 20 20 C 1.50694 * 119.99988 * 0.02562 * 18 2 1 21 21 H 1.09000 * 110.01657 * 300.06351 * 20 18 2 22 22 C 1.53879 * 110.03331 * 61.45414 * 20 18 2 23 23 C 1.54272 * 106.59584 * 119.28272 * 22 20 18 24 24 C 1.54887 * 104.19592 * 23.61230 * 23 22 20 25 25 H 1.08997 * 110.75788 * 80.55415 * 24 23 22 26 26 C 1.50698 * 110.75448 * 203.73979 * 24 23 22 27 27 N 1.34783 * 120.00264 * 298.54829 * 26 24 23 28 28 O 1.21281 * 120.00218 * 118.54483 * 26 24 23 29 29 C 1.54269 * 110.03306 * 178.61962 * 20 18 2 30 30 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 32 32 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 33 33 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 34 34 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 35 35 H 1.09002 * 109.46747 * 300.00171 * 4 3 2 36 36 H 1.08996 * 109.47074 * 59.99445 * 4 3 2 37 37 H 1.00899 * 110.99990 * 56.04003 * 5 4 3 38 38 H 1.08989 * 109.47092 * 299.99752 * 6 5 4 39 39 H 1.08996 * 109.47337 * 60.00512 * 6 5 4 40 40 H 0.97007 * 119.99834 * 0.02562 * 9 7 6 41 41 H 0.96999 * 119.99804 * 180.02562 * 13 12 10 42 42 H 1.08997 * 110.03013 * 238.56954 * 22 20 18 43 43 H 1.09003 * 110.02965 * 0.02562 * 22 20 18 44 44 H 1.09002 * 110.47923 * 142.28967 * 23 22 20 45 45 H 1.09001 * 110.48652 * 264.93114 * 23 22 20 46 46 H 0.97002 * 119.99311 * 359.97438 * 27 26 24 47 47 H 0.96992 * 120.00214 * 180.02562 * 27 26 24 48 48 H 1.09002 * 110.48702 * 335.78604 * 29 20 18 49 49 H 1.09001 * 110.48283 * 98.42684 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4585 1.7069 -1.4424 5 7 3.1926 2.9794 -1.4424 6 6 3.4620 3.4317 -2.8138 7 6 4.2141 4.7370 -2.7736 8 8 4.4981 5.2407 -1.7073 9 7 4.5720 5.3443 -3.9223 10 6 5.2566 6.5315 -3.8857 11 1 5.5095 6.9799 -2.9363 12 6 5.6251 7.1578 -5.0701 13 7 5.3178 6.6119 -6.2253 14 14 6.5585 8.7751 -5.0201 15 1 7.8435 8.5831 -4.3009 16 1 6.8313 9.2322 -6.4065 17 1 5.7434 9.7955 -4.3133 18 6 2.1388 -1.1673 0.0056 19 8 3.3516 -1.1673 0.0060 20 6 1.3852 -2.4723 0.0112 21 1 0.7540 -2.5348 0.8976 22 6 0.5239 -2.5891 -1.2586 23 6 1.0211 -3.8383 -2.0150 24 6 1.6834 -4.7081 -0.9178 25 1 0.9306 -5.2633 -0.3582 26 6 2.6979 -5.6459 -1.5197 27 7 2.3095 -6.5720 -2.4187 28 8 3.8638 -5.5674 -1.1953 29 6 2.3757 -3.6546 -0.0180 30 1 -0.3634 0.0049 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6064 2.0295 0.5096 34 1 3.1477 1.1395 0.5181 35 1 3.0497 0.9460 -1.9520 36 1 1.5083 1.8361 -1.9605 37 1 4.0478 2.9034 -0.9124 38 1 4.0607 2.6829 -3.3323 39 1 2.5189 3.5724 -3.3419 40 1 4.3451 4.9413 -4.7750 41 1 5.5754 7.0490 -7.0520 42 1 -0.5252 -2.7091 -0.9883 43 1 0.6513 -1.7020 -1.8790 44 1 0.1834 -4.3684 -2.4681 45 1 1.7524 -3.5591 -2.7735 46 1 1.3769 -6.6351 -2.6779 47 1 2.9624 -7.1759 -2.8058 48 1 3.3258 -3.3457 -0.4540 49 1 2.5266 -4.0506 0.9863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481280318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = -114.124668 kcal Electronic energy + Delta-G solvation = -29188.358290 eV Core-core repulsion = 24956.906871 eV Total energy + Delta-G solvation = -4231.451419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95443 -39.76995 -38.26611 -37.24306 -36.31218 -34.96913 -34.07113 -33.78478 -31.24241 -30.82786 -29.29594 -29.10698 -27.07153 -25.93924 -24.14561 -23.15797 -22.26738 -21.42758 -20.22001 -19.40212 -19.04007 -18.01247 -17.84900 -17.34952 -16.89310 -16.53138 -16.21670 -16.16280 -15.50238 -15.13151 -14.96292 -14.75918 -14.46863 -14.14952 -13.90487 -13.70791 -13.59621 -13.36827 -13.22593 -13.14440 -12.84497 -12.42541 -12.24404 -12.10019 -11.82368 -11.66657 -11.59417 -11.47687 -11.46833 -11.27602 -11.16198 -11.07463 -10.93139 -10.41729 -10.23870 -10.18562 -10.09598 -9.88814 -9.47057 -8.92095 -8.42268 -8.04830 -7.92960 -6.38672 -3.79415 2.25870 2.42690 2.69562 3.12153 3.22783 3.27962 3.32805 3.88554 3.94363 3.95461 4.13082 4.19148 4.44498 4.52819 4.67290 4.74415 4.81187 4.90519 4.97026 5.01007 5.03008 5.06182 5.12125 5.22379 5.25929 5.30674 5.31707 5.37264 5.43435 5.53745 5.63380 5.74653 5.79555 5.88658 5.92805 6.01980 6.08396 6.25679 6.34153 6.36933 6.89683 7.15310 7.21337 7.57998 7.67005 7.87799 7.99368 8.09214 8.64520 9.20774 9.57401 10.09067 10.79085 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.001782 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.153551 B =15711.355044 C =16574.162955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.615 5.615 3 C 0.116 3.884 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.515 3.485 19 O -0.529 6.529 20 C -0.113 4.113 21 H 0.102 0.898 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.106 0.894 26 C 0.523 3.477 27 N -0.858 5.858 28 O -0.535 6.535 29 C -0.092 4.092 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.400 0.600 47 H 0.401 0.599 48 H 0.100 0.900 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 -27.070 7.474 33.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.348 5.348 3 C -0.006 4.006 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.303 3.697 19 O -0.404 6.404 20 C -0.135 4.135 21 H 0.120 0.880 22 C -0.154 4.154 23 C -0.151 4.151 24 C -0.138 4.138 25 H 0.124 0.876 26 C 0.307 3.693 27 N -0.421 5.421 28 O -0.410 6.410 29 C -0.130 4.130 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.229 0.771 47 H 0.231 0.769 48 H 0.119 0.881 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.936 -26.047 8.400 32.184 hybrid contribution 0.570 -0.318 -1.263 1.421 sum -16.366 -26.365 7.137 31.841 Atomic orbital electron populations 1.22112 0.79472 1.04090 1.02203 1.47793 1.07088 1.06043 1.73926 1.21420 0.98265 0.83870 0.97093 1.22246 0.98928 0.90566 0.96669 1.60036 1.28556 1.27906 1.13466 1.21651 1.00153 0.96120 0.90105 1.19795 0.85156 0.87324 0.85044 1.90521 1.59400 1.67118 1.29644 1.41852 1.50051 1.21391 1.06761 1.19664 1.30977 0.97717 0.94527 0.87952 1.25268 0.98202 0.99896 0.94642 1.69607 1.47158 1.40154 0.97480 0.85904 0.79832 0.81363 0.77030 1.19913 1.21001 1.19889 1.20597 0.88029 0.85245 0.75840 1.90740 1.13930 1.87026 1.48726 1.21965 0.97962 0.93184 1.00347 0.88040 1.22243 0.99162 0.98781 0.95233 1.22375 1.00276 0.95432 0.97053 1.22323 0.97300 0.96055 0.98164 0.87632 1.20538 0.89482 0.80635 0.78621 1.43900 1.13771 1.37989 1.46465 1.90793 1.19182 1.70470 1.60580 1.22187 0.99275 0.91444 1.00120 0.92503 0.90600 0.90038 0.89356 0.89762 0.95175 0.91228 0.82948 0.93834 0.89668 0.77461 0.91848 0.90075 0.90457 0.90443 0.90708 0.77148 0.76871 0.88117 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 9.93 59.84 0.59 0.95 16 2 N -0.61 -5.93 2.84 -181.58 -0.52 -6.44 16 3 C 0.12 1.37 5.67 -4.05 -0.02 1.35 16 4 C 0.05 0.63 6.01 -3.83 -0.02 0.61 16 5 N -0.67 -11.41 6.13 -115.06 -0.70 -12.12 16 6 C 0.05 0.98 6.17 -4.97 -0.03 0.95 16 7 C 0.44 10.81 7.82 -10.99 -0.09 10.72 16 8 O -0.58 -16.30 15.78 5.55 0.09 -16.22 16 9 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 10 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 11 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 14 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.52 5.80 6.85 -10.98 -0.08 5.72 16 19 O -0.53 -8.48 15.00 5.56 0.08 -8.39 16 20 C -0.11 -0.81 2.56 -90.65 -0.23 -1.04 16 21 H 0.10 0.51 8.12 -51.93 -0.42 0.09 16 22 C -0.12 -0.55 4.48 -25.61 -0.11 -0.67 16 23 C -0.11 -0.52 6.22 -25.07 -0.16 -0.68 16 24 C -0.12 -0.69 3.29 -89.78 -0.30 -0.98 16 25 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 26 C 0.52 4.35 7.42 -10.98 -0.08 4.27 16 27 N -0.86 -3.61 8.82 31.22 0.28 -3.33 16 28 O -0.53 -7.33 16.63 5.56 0.09 -7.24 16 29 C -0.09 -0.82 5.17 -25.07 -0.13 -0.95 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.30 4.04 -51.93 -0.21 0.09 16 33 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.08 1.16 7.42 -51.93 -0.39 0.77 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.35 6.36 8.43 -39.29 -0.33 6.03 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.08 0.17 7.58 -51.93 -0.39 -0.22 16 43 H 0.08 0.46 6.90 -51.93 -0.36 0.10 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 46 H 0.40 0.37 8.82 -40.82 -0.36 0.01 16 47 H 0.40 1.53 8.93 -40.82 -0.36 1.17 16 48 H 0.10 1.33 6.28 -51.93 -0.33 1.00 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -38.39 400.39 -7.52 -45.91 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.62 Total: 12.35 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -0.89 Total: 12.05 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.28 Total: -60.92 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: 0.26 Total: -31.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.39 -7.52 -45.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481280318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.213 kcal (2) G-P(sol) polarization free energy of solvation -38.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds