Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.53000 * 109.47637 * 269.72749 * 3 2 1 5 5 N 1.46896 * 109.47529 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99867 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46796 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99973 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00232 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00613 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99517 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00263 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00033 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99839 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47592 * 59.99672 * 14 12 10 16 16 H 1.48507 * 109.47077 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47115 * 299.99739 * 14 12 10 18 18 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 19 19 O 1.21283 * 119.99649 * 180.02562 * 18 2 1 20 20 C 1.50694 * 119.99988 * 0.02562 * 18 2 1 21 21 H 1.09000 * 110.01657 * 300.06351 * 20 18 2 22 22 C 1.53879 * 110.03331 * 61.45414 * 20 18 2 23 23 C 1.54272 * 106.59584 * 119.28272 * 22 20 18 24 24 C 1.54887 * 104.19592 * 23.61230 * 23 22 20 25 25 H 1.08997 * 110.75788 * 80.55415 * 24 23 22 26 26 C 1.50698 * 110.75448 * 203.73979 * 24 23 22 27 27 N 1.34783 * 120.00264 * 298.54829 * 26 24 23 28 28 O 1.21281 * 120.00218 * 118.54483 * 26 24 23 29 29 C 1.54269 * 110.03306 * 178.61962 * 20 18 2 30 30 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 32 32 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 33 33 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 34 34 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 35 35 H 1.09002 * 109.46747 * 300.00171 * 4 3 2 36 36 H 1.08996 * 109.47074 * 59.99445 * 4 3 2 37 37 H 1.00899 * 110.99990 * 56.04003 * 5 4 3 38 38 H 1.08989 * 109.47092 * 299.99752 * 6 5 4 39 39 H 1.08996 * 109.47337 * 60.00512 * 6 5 4 40 40 H 0.97007 * 119.99834 * 0.02562 * 9 7 6 41 41 H 0.96999 * 119.99804 * 180.02562 * 13 12 10 42 42 H 1.08997 * 110.03013 * 238.56954 * 22 20 18 43 43 H 1.09003 * 110.02965 * 0.02562 * 22 20 18 44 44 H 1.09002 * 110.47923 * 142.28967 * 23 22 20 45 45 H 1.09001 * 110.48652 * 264.93114 * 23 22 20 46 46 H 0.97002 * 119.99311 * 359.97438 * 27 26 24 47 47 H 0.96992 * 120.00214 * 180.02562 * 27 26 24 48 48 H 1.09002 * 110.48702 * 335.78604 * 29 20 18 49 49 H 1.09001 * 110.48283 * 98.42684 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4585 1.7069 -1.4424 5 7 3.1926 2.9794 -1.4424 6 6 3.4620 3.4317 -2.8138 7 6 4.2141 4.7370 -2.7736 8 8 4.4981 5.2407 -1.7073 9 7 4.5720 5.3443 -3.9223 10 6 5.2566 6.5315 -3.8857 11 1 5.5095 6.9799 -2.9363 12 6 5.6251 7.1578 -5.0701 13 7 5.3178 6.6119 -6.2253 14 14 6.5585 8.7751 -5.0201 15 1 7.8435 8.5831 -4.3009 16 1 6.8313 9.2322 -6.4065 17 1 5.7434 9.7955 -4.3133 18 6 2.1388 -1.1673 0.0056 19 8 3.3516 -1.1673 0.0060 20 6 1.3852 -2.4723 0.0112 21 1 0.7540 -2.5348 0.8976 22 6 0.5239 -2.5891 -1.2586 23 6 1.0211 -3.8383 -2.0150 24 6 1.6834 -4.7081 -0.9178 25 1 0.9306 -5.2633 -0.3582 26 6 2.6979 -5.6459 -1.5197 27 7 2.3095 -6.5720 -2.4187 28 8 3.8638 -5.5674 -1.1953 29 6 2.3757 -3.6546 -0.0180 30 1 -0.3634 0.0049 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6064 2.0295 0.5096 34 1 3.1477 1.1395 0.5181 35 1 3.0497 0.9460 -1.9520 36 1 1.5083 1.8361 -1.9605 37 1 4.0478 2.9034 -0.9124 38 1 4.0607 2.6829 -3.3323 39 1 2.5189 3.5724 -3.3419 40 1 4.3451 4.9413 -4.7750 41 1 5.5754 7.0490 -7.0520 42 1 -0.5252 -2.7091 -0.9883 43 1 0.6513 -1.7020 -1.8790 44 1 0.1834 -4.3684 -2.4681 45 1 1.7524 -3.5591 -2.7735 46 1 1.3769 -6.6351 -2.6779 47 1 2.9624 -7.1759 -2.8058 48 1 3.3258 -3.3457 -0.4540 49 1 2.5266 -4.0506 0.9863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481280318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -147.806973 kcal Electronic energy + Delta-G solvation = -29189.818865 eV Core-core repulsion = 24956.906871 eV Total energy + Delta-G solvation = -4232.911993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.65519 -40.51683 -40.17649 -37.97415 -37.36612 -36.27035 -35.72313 -34.65272 -33.30778 -31.72978 -30.01555 -29.79153 -28.03622 -27.25148 -25.76171 -24.03346 -23.14309 -22.08556 -21.16216 -20.75991 -20.03433 -19.83417 -18.59614 -17.94487 -17.89012 -17.63806 -17.21022 -17.03391 -16.85629 -16.49680 -16.02358 -15.93637 -15.56039 -15.38765 -15.29241 -14.85491 -14.72296 -14.34715 -14.12530 -13.95320 -13.85011 -13.54485 -13.43628 -13.36464 -12.98570 -12.86232 -12.80036 -12.46735 -12.44335 -12.16386 -12.13012 -12.09393 -12.07713 -11.78595 -11.64458 -11.52721 -10.92276 -10.72850 -10.63939 -10.42270 -10.04813 -9.70612 -9.47906 -8.48626 -5.97912 1.38774 1.40582 1.51933 1.59584 1.65701 1.92049 2.01021 2.28482 2.64226 2.94753 3.17877 3.34772 3.45620 3.50253 3.71367 3.94738 4.06429 4.15002 4.23927 4.26108 4.34305 4.38535 4.40388 4.43956 4.46004 4.52370 4.53864 4.57530 4.70061 4.75531 4.80448 4.92950 4.94214 5.03454 5.10883 5.21408 5.30297 5.36174 5.38587 5.50354 5.80540 5.91461 6.02911 6.22376 6.40745 6.50795 6.56833 7.09416 7.17900 7.39186 7.52080 8.07278 8.68583 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.001782 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.153551 B =15711.355044 C =16574.162955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.057 3.943 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.571 5.571 10 C -0.337 4.337 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.996 3.004 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.270 1.270 18 C 0.504 3.496 19 O -0.592 6.592 20 C -0.104 4.104 21 H 0.135 0.865 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.106 4.106 25 H 0.147 0.853 26 C 0.514 3.486 27 N -0.835 5.835 28 O -0.603 6.603 29 C -0.100 4.100 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.014 0.986 36 H 0.092 0.908 37 H 0.341 0.659 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.397 0.603 41 H 0.279 0.721 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.046 0.954 46 H 0.420 0.580 47 H 0.404 0.596 48 H 0.046 0.954 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.866 -28.140 6.775 36.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.342 5.342 3 C -0.003 4.003 4 C -0.073 4.073 5 N -0.307 5.307 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.208 5.208 10 C -0.466 4.466 11 H 0.097 0.903 12 C -0.214 4.214 13 N -0.560 5.560 14 Si 0.819 3.181 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.195 1.195 18 C 0.294 3.706 19 O -0.472 6.472 20 C -0.125 4.125 21 H 0.153 0.847 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.127 4.127 25 H 0.165 0.835 26 C 0.300 3.700 27 N -0.399 5.399 28 O -0.484 6.484 29 C -0.138 4.138 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.110 0.890 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.065 0.935 46 H 0.252 0.748 47 H 0.234 0.766 48 H 0.065 0.935 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.948 -27.159 7.648 35.142 hybrid contribution 1.761 -0.042 -1.045 2.048 sum -19.187 -27.201 6.603 33.936 Atomic orbital electron populations 1.22449 0.76344 1.05776 1.03897 1.47898 1.08873 1.04650 1.72788 1.21228 0.97807 0.85469 0.95784 1.22252 0.98857 0.88327 0.97881 1.60080 1.28224 1.30007 1.12393 1.21527 1.00581 0.93018 0.91494 1.20793 0.84252 0.88617 0.83911 1.90488 1.60793 1.68658 1.30962 1.41915 1.50286 1.21169 1.07474 1.19656 1.33287 0.99419 0.94256 0.90258 1.26088 0.98392 1.02940 0.93933 1.69669 1.47157 1.41282 0.97930 0.84955 0.78308 0.77151 0.77704 1.19836 1.19328 1.19511 1.21482 0.87611 0.86947 0.74566 1.90719 1.16901 1.87965 1.51639 1.22031 0.97545 0.89528 1.03356 0.84677 1.22331 1.00932 0.98282 0.93436 1.22414 1.00775 0.95544 0.95972 1.22352 0.96915 0.95179 0.98246 0.83515 1.21100 0.89029 0.81190 0.78713 1.43739 1.15043 1.36426 1.44672 1.90771 1.22035 1.72474 1.63122 1.22113 0.97977 0.93564 1.00172 0.90758 0.89926 0.87434 0.87934 0.92615 0.96785 0.89014 0.84063 0.92442 0.87104 0.76943 0.91208 0.85501 0.91534 0.86227 0.93535 0.74785 0.76563 0.93492 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 9.93 127.77 1.27 1.69 16 2 N -0.61 -11.05 2.84 -846.78 -2.41 -13.46 16 3 C 0.12 2.86 5.67 86.38 0.49 3.35 16 4 C 0.06 1.51 6.01 86.30 0.52 2.03 16 5 N -0.67 -23.21 6.13 -517.95 -3.17 -26.39 16 6 C 0.07 2.45 6.17 85.56 0.53 2.97 16 7 C 0.44 21.81 7.82 87.66 0.69 22.49 16 8 O -0.62 -35.95 15.78 -3.07 -0.05 -35.99 16 9 N -0.57 -30.40 5.29 -306.98 -1.62 -32.03 16 10 C -0.34 -19.66 9.68 84.04 0.81 -18.85 16 11 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 12 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 13 N -0.92 -50.55 13.05 21.66 0.28 -50.26 16 14 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 C 0.50 11.45 6.85 87.65 0.60 12.05 16 19 O -0.59 -20.73 15.00 -3.04 -0.05 -20.78 16 20 C -0.10 -1.29 2.56 -10.82 -0.03 -1.32 16 21 H 0.14 0.81 8.12 -2.39 -0.02 0.79 16 22 C -0.11 -0.62 4.48 31.32 0.14 -0.48 16 23 C -0.11 -0.66 6.22 31.67 0.20 -0.46 16 24 C -0.11 -1.04 3.29 -10.25 -0.03 -1.07 16 25 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 26 C 0.51 8.47 7.42 87.66 0.65 9.12 16 27 N -0.84 -5.73 8.82 -173.53 -1.53 -7.26 16 28 O -0.60 -17.93 16.63 -3.03 -0.05 -17.98 16 29 C -0.10 -1.83 5.17 31.67 0.16 -1.66 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.56 8.07 -2.39 -0.02 0.55 16 32 H 0.11 0.25 4.04 -2.38 -0.01 0.24 16 33 H 0.10 2.12 8.07 -2.39 -0.02 2.10 16 34 H 0.06 1.64 7.42 -2.39 -0.02 1.63 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.34 12.89 8.43 -89.69 -0.76 12.13 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.40 19.98 7.90 -92.70 -0.73 19.25 16 41 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.13 -0.36 7.58 -2.39 -0.02 -0.38 16 43 H 0.07 0.57 6.90 -2.39 -0.02 0.55 16 44 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.05 0.56 8.04 -2.39 -0.02 0.54 16 46 H 0.42 -0.57 8.82 -92.71 -0.82 -1.39 16 47 H 0.40 2.72 8.93 -92.71 -0.83 1.90 16 48 H 0.05 1.40 6.28 -2.39 -0.01 1.38 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -91.85 400.39 -2.22 -94.07 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -2.11 Total: 34.66 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: 6.46 Total: 29.59 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -8.45 Total: -129.39 kcal Atomic # 8 Polarization: -74.61 SS G_CDS: -0.14 Total: -74.75 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -91.85 -2.22 -94.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481280318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.737 kcal (2) G-P(sol) polarization free energy of solvation -91.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds