Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 119.99910 * 2 1 4 4 O 1.21283 * 119.99917 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00072 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.46940 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47000 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 11 11 C 1.46506 * 120.00209 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.28940 * 179.29594 * 11 2 1 13 13 C 1.54266 * 110.32367 * 57.17205 * 11 2 1 14 14 C 1.54378 * 105.05845 * 241.10812 * 13 11 2 15 15 N 1.48560 * 104.59695 * 23.84999 * 14 13 11 16 16 C 1.46904 * 110.99689 * 200.96479 * 15 14 13 17 17 C 1.50699 * 109.46824 * 290.12431 * 16 15 14 18 18 O 1.21288 * 120.00308 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00017 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00322 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99703 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00505 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46748 * 60.00761 * 24 22 20 26 26 H 1.48497 * 109.47291 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47298 * 300.00801 * 24 22 20 28 28 C 1.48825 * 104.23484 * 320.49161 * 15 14 13 29 29 H 1.09004 * 109.46803 * 90.00171 * 1 2 3 30 30 H 1.09004 * 109.46773 * 209.99313 * 1 2 3 31 31 H 1.08995 * 109.47100 * 329.99527 * 1 2 3 32 32 H 1.08995 * 109.46839 * 59.99638 * 5 3 2 33 33 H 1.09001 * 109.46310 * 299.99401 * 5 3 2 34 34 H 1.09000 * 109.47849 * 59.99708 * 6 5 3 35 35 H 1.08998 * 109.47443 * 299.99576 * 6 5 3 36 36 H 1.09009 * 109.46730 * 59.99606 * 7 6 5 37 37 H 1.08998 * 109.46846 * 300.00150 * 7 6 5 38 38 H 0.97004 * 119.99652 * 179.72868 * 9 8 7 39 39 H 0.97000 * 119.99894 * 359.71837 * 9 8 7 40 40 H 1.09008 * 110.32290 * 0.02562 * 13 11 2 41 41 H 1.08997 * 110.32623 * 122.20544 * 13 11 2 42 42 H 1.08994 * 110.41089 * 142.63350 * 14 13 11 43 43 H 1.09002 * 110.40400 * 264.95232 * 14 13 11 44 44 H 1.08990 * 109.47121 * 50.12362 * 16 15 14 45 45 H 1.08994 * 109.46794 * 170.13069 * 16 15 14 46 46 H 0.97003 * 119.99877 * 359.97438 * 19 17 16 47 47 H 0.96997 * 120.00769 * 179.97438 * 23 22 20 48 48 H 1.08995 * 110.45484 * 280.77570 * 28 15 14 49 49 H 1.09006 * 110.48862 * 158.24772 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3796 3.6352 -0.0002 7 6 1.6145 4.9602 -0.0002 8 6 2.5938 6.1057 -0.0004 9 7 2.1445 7.3764 0.0052 10 8 3.7862 5.8840 0.0001 11 6 2.1975 -1.2688 -0.0006 12 1 3.2718 -1.0849 -0.0130 13 6 1.7863 -2.1244 -1.2165 14 6 1.1848 -3.4128 -0.6154 15 7 0.7380 -3.0179 0.7453 16 6 0.6044 -4.1927 1.6171 17 6 -0.5730 -5.0196 1.1687 18 8 -1.2353 -4.6655 0.2164 19 7 -0.8900 -6.1527 1.8260 20 6 -1.9607 -6.9054 1.4178 21 1 -2.5500 -6.5904 0.5692 22 6 -2.2872 -8.0738 2.0950 23 7 -1.5700 -8.4573 3.1272 24 14 -3.7466 -9.0989 1.5393 25 1 -3.5342 -9.5437 0.1384 26 1 -3.8820 -10.2861 2.4209 27 1 -4.9839 -8.2815 1.6169 28 6 1.8120 -2.1111 1.2344 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7590 2.5298 0.8908 33 1 0.7584 2.5302 -0.8892 34 1 3.0056 3.5775 -0.8906 35 1 3.0069 3.5775 0.8893 36 1 0.9882 5.0182 0.8901 37 1 0.9875 5.0177 -0.8900 38 1 2.7749 8.1136 0.0091 39 1 1.1908 7.5535 0.0052 40 1 1.0397 -1.6001 -1.8132 41 1 2.6590 -2.3619 -1.8249 42 1 0.3366 -3.7502 -1.2110 43 1 1.9422 -4.1945 -0.5569 44 1 1.5125 -4.7926 1.5600 45 1 0.4485 -3.8662 2.6453 46 1 -0.3600 -6.4362 2.5874 47 1 -1.7981 -9.2728 3.6002 48 1 2.6683 -2.6883 1.5832 49 1 1.4357 -1.4685 2.0304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481755190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = -107.056626 kcal Electronic energy + Delta-G solvation = -29288.971721 eV Core-core repulsion = 25057.826795 eV Total energy + Delta-G solvation = -4231.144926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43280 -39.80665 -38.82813 -37.55965 -35.05579 -34.56122 -34.03974 -33.86199 -31.59165 -31.07597 -29.24100 -28.26187 -27.10415 -26.12551 -24.26722 -23.35212 -21.21351 -20.89528 -20.56236 -19.18936 -18.95997 -17.93220 -17.82328 -17.13353 -17.01202 -16.51780 -16.30692 -15.96756 -15.52203 -15.29118 -14.77166 -14.53180 -14.31238 -14.09209 -13.94528 -13.77370 -13.45736 -13.19432 -12.78812 -12.60376 -12.41174 -12.35640 -12.19156 -11.91317 -11.87343 -11.72691 -11.64976 -11.51034 -11.46309 -11.10292 -11.07111 -10.88472 -10.66254 -10.44962 -10.37422 -10.22287 -10.11670 -9.78881 -9.49221 -8.78218 -8.44844 -8.05652 -7.95710 -6.42274 -3.83300 2.26370 2.54726 2.84984 3.17307 3.18969 3.24943 3.28908 3.89815 4.02747 4.25568 4.28589 4.41338 4.62022 4.64282 4.69674 4.77102 4.99261 5.04461 5.09239 5.15157 5.20451 5.22343 5.28382 5.35272 5.38605 5.45210 5.55088 5.71222 5.78173 5.79893 5.82158 5.85179 5.92771 6.01811 6.09326 6.18229 6.26152 6.34315 6.41820 6.52163 6.88241 7.05638 7.16707 7.36753 7.53965 7.86559 8.05035 8.10977 8.60996 9.17265 9.53828 10.05550 10.75380 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.001675 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.562638 B =16711.071324 C =17042.732101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.511 3.489 4 O -0.544 6.544 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.143 4.143 8 C 0.514 3.486 9 N -0.861 5.861 10 O -0.538 6.538 11 C 0.137 3.863 12 H 0.105 0.895 13 C -0.133 4.133 14 C 0.038 3.962 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.446 3.554 18 O -0.579 6.579 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.019 3.981 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.400 0.600 39 H 0.401 0.599 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.039 0.961 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.053 0.947 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 25.342 -4.181 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.422 6.422 5 C -0.179 4.179 6 C -0.129 4.129 7 C -0.183 4.183 8 C 0.299 3.701 9 N -0.425 5.425 10 O -0.414 6.414 11 C 0.033 3.967 12 H 0.123 0.877 13 C -0.172 4.172 14 C -0.090 4.090 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.110 4.110 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.230 0.770 39 H 0.229 0.771 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.771 25.296 -4.694 26.167 hybrid contribution -0.056 -0.840 0.410 0.936 sum 4.715 24.456 -4.284 25.272 Atomic orbital electron populations 1.21944 0.78629 1.04483 1.02200 1.47914 1.07493 1.05273 1.72819 1.20692 0.88047 0.85479 0.75862 1.90704 1.14055 1.87415 1.50006 1.21704 0.99372 0.92414 1.04385 1.21093 0.96848 0.89754 1.05208 1.21707 0.98313 0.93662 1.04602 1.20781 0.89869 0.84542 0.74910 1.43943 1.11915 1.07946 1.78646 1.90793 1.17208 1.84784 1.48631 1.21809 0.97354 0.82775 0.94734 0.87726 1.22721 1.01016 0.96228 0.97232 1.23161 0.99676 0.95141 0.91057 1.65245 1.39398 1.14149 1.01913 1.22064 0.97982 0.91928 0.97855 1.19674 0.87605 0.83231 0.86409 1.90493 1.54346 1.71584 1.29858 1.41858 1.28443 1.20400 1.29448 1.19637 1.06191 1.02939 1.14131 0.87987 1.25249 0.99071 0.97653 0.95920 1.69600 1.39909 1.24846 1.19981 0.85925 0.81087 0.78799 0.78441 1.19947 1.20998 1.19918 1.23583 0.94146 0.95936 0.97382 0.92774 0.88040 0.91652 0.88734 0.88821 0.90400 0.90365 0.88606 0.88628 0.76966 0.77084 0.90394 0.90925 0.88068 0.94226 0.93151 0.89338 0.77521 0.91833 0.92919 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.26 59.85 0.55 1.23 16 2 N -0.60 -6.76 2.74 -172.34 -0.47 -7.23 16 3 C 0.51 5.99 7.67 -10.98 -0.08 5.91 16 4 O -0.54 -8.52 15.34 5.56 0.09 -8.44 16 5 C -0.14 -1.04 4.25 -27.88 -0.12 -1.16 16 6 C -0.09 -0.79 3.79 -26.73 -0.10 -0.89 16 7 C -0.14 -0.74 5.70 -27.88 -0.16 -0.89 16 8 C 0.51 3.98 8.10 -10.98 -0.09 3.89 16 9 N -0.86 -3.21 8.87 31.22 0.28 -2.94 16 10 O -0.54 -7.06 16.82 5.55 0.09 -6.97 16 11 C 0.14 1.69 3.46 -66.54 -0.23 1.46 16 12 H 0.10 1.39 6.96 -51.93 -0.36 1.02 16 13 C -0.13 -1.64 6.47 -25.35 -0.16 -1.81 16 14 C 0.04 0.57 5.80 -2.18 -0.01 0.56 16 15 N -0.48 -7.50 3.93 -231.18 -0.91 -8.41 16 16 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 17 C 0.45 10.18 7.59 -10.99 -0.08 10.09 16 18 O -0.58 -14.98 14.42 5.55 0.08 -14.90 16 19 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 20 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.30 13.05 55.49 0.72 -23.58 16 24 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.02 0.24 5.49 -2.03 -0.01 0.23 16 29 H 0.05 0.49 7.88 -51.93 -0.41 0.08 16 30 H 0.10 1.23 6.31 -51.93 -0.33 0.91 16 31 H 0.06 0.45 6.44 -51.93 -0.33 0.12 16 32 H 0.09 0.52 7.40 -51.93 -0.38 0.14 16 33 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.10 0.29 8.14 -51.92 -0.42 -0.14 16 37 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.40 1.33 8.93 -40.82 -0.36 0.97 16 39 H 0.40 0.18 8.83 -40.82 -0.36 -0.18 16 40 H 0.08 0.96 7.17 -51.92 -0.37 0.58 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 43 H 0.04 0.59 7.83 -51.93 -0.41 0.18 16 44 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 45 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 49 H 0.08 1.05 8.05 -51.93 -0.42 0.64 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -36.15 398.13 -7.67 -43.83 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.70 Total: 9.63 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -0.77 Total: 11.32 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.44 Total: -56.26 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: 0.26 Total: -30.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.15 -7.67 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481755190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.230 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds