Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47476 * 2 1 4 4 C 1.30994 * 120.00276 * 124.99702 * 3 2 1 5 5 C 1.50698 * 119.99976 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47100 * 125.00107 * 5 4 3 7 7 N 1.46896 * 109.47371 * 180.02562 * 6 5 4 8 8 C 1.46899 * 111.00033 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.44967 * 35.03905 * 8 7 6 10 10 C 1.53035 * 109.46307 * 275.06843 * 8 7 6 11 11 C 1.53191 * 109.31508 * 178.61692 * 10 8 7 12 12 N 1.46928 * 108.77779 * 54.63147 * 11 10 8 13 13 C 1.34772 * 120.62713 * 126.41584 * 12 11 10 14 14 O 1.21284 * 120.00170 * 180.02562 * 13 12 11 15 15 C 1.50701 * 120.00224 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47244 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00039 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99667 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00187 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99567 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46872 * 90.00005 * 21 19 17 23 23 H 1.48498 * 109.46773 * 209.99568 * 21 19 17 24 24 H 1.48499 * 109.47045 * 329.99708 * 21 19 17 25 25 C 1.46992 * 118.75388 * 306.39757 * 12 11 10 26 26 C 1.53044 * 109.45958 * 155.00011 * 8 7 6 27 27 H 1.09002 * 109.50098 * 301.36720 * 26 8 7 28 28 C 1.52997 * 109.49922 * 61.43494 * 26 8 7 29 29 H 1.09003 * 109.47281 * 300.00558 * 1 2 3 30 30 H 1.09001 * 109.47254 * 59.99826 * 1 2 3 31 31 H 1.08994 * 109.47351 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47466 * 239.99963 * 2 1 3 33 33 H 1.09001 * 109.47254 * 120.00174 * 2 1 3 34 34 H 1.07998 * 119.99773 * 304.99916 * 3 2 1 35 35 H 1.08003 * 120.00077 * 0.02562 * 4 3 2 36 36 H 1.09002 * 109.47714 * 5.00571 * 5 4 3 37 37 H 1.09003 * 109.47810 * 245.00426 * 5 4 3 38 38 H 1.09002 * 109.46961 * 60.00275 * 6 5 4 39 39 H 1.08999 * 109.47110 * 300.00276 * 6 5 4 40 40 H 1.00901 * 111.00392 * 56.04651 * 7 6 5 41 41 H 1.09006 * 109.49332 * 298.56707 * 10 8 7 42 42 H 1.08997 * 109.49680 * 58.65986 * 10 8 7 43 43 H 1.08997 * 109.58579 * 174.42673 * 11 10 8 44 44 H 1.09006 * 109.58119 * 294.84487 * 11 10 8 45 45 H 1.09004 * 109.47546 * 300.00516 * 15 13 12 46 46 H 1.09005 * 109.47242 * 60.00083 * 15 13 12 47 47 H 0.97006 * 119.99941 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.57835 * 293.82029 * 25 12 11 49 49 H 1.09002 * 109.62350 * 173.38217 * 25 12 11 50 50 H 1.09002 * 109.47153 * 59.93378 * 28 26 8 51 51 H 1.09001 * 109.46832 * 299.93569 * 28 26 8 52 52 H 1.09004 * 109.47261 * 179.97438 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8641 1.8214 0.9293 5 6 3.3670 3.2420 0.9289 6 6 3.0718 3.8879 2.2842 7 7 3.5614 5.2729 2.2836 8 6 3.2952 5.9259 3.5723 9 1 3.3933 5.1961 4.3761 10 6 1.8748 6.4955 3.5715 11 6 1.5887 7.1452 4.9290 12 7 2.6363 8.1366 5.2090 13 6 2.3134 9.4083 5.5173 14 8 3.1875 10.2175 5.7460 15 6 0.8665 9.8251 5.5768 16 16 0.7611 11.5786 6.0132 17 6 -0.9882 11.7895 6.0125 18 1 -1.6328 10.9538 5.7836 19 6 -1.5377 13.0298 6.3061 20 7 -0.7521 14.0485 6.5845 21 14 -3.3924 13.2533 6.3059 22 1 -3.9247 12.9730 7.6635 23 1 -3.7226 14.6496 5.9234 24 1 -4.0039 12.3150 5.3309 25 6 4.0432 7.7154 5.1471 26 6 4.3010 7.0592 3.7870 27 1 5.3136 6.6563 3.7637 28 6 4.1404 8.1014 2.6785 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7066 2.1087 -0.7662 35 1 3.1902 1.1334 1.6953 36 1 2.8656 3.8048 0.1415 37 1 4.4423 3.2470 0.7506 38 1 3.5732 3.3252 3.0717 39 1 1.9965 3.8831 2.4625 40 1 3.1593 5.7983 1.5218 41 1 1.7833 7.2433 2.7837 42 1 1.1604 5.6914 3.3952 43 1 0.6170 7.6384 4.9005 44 1 1.5906 6.3818 5.7070 45 1 0.4015 9.6638 4.6042 46 1 0.3481 9.2318 6.3301 47 1 -1.1362 14.9152 6.7901 48 1 4.2452 6.9985 5.9429 49 1 4.6909 8.5845 5.2622 50 1 3.1278 8.5040 2.7023 51 1 4.3229 7.6337 1.7110 52 1 4.8567 8.9086 2.8321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482415331.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -40.552757 kcal Electronic energy + Delta-G solvation = -27015.955311 eV Core-core repulsion = 23333.987424 eV Total energy + Delta-G solvation = -3681.967887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32013 -38.26020 -36.96114 -35.37829 -33.49517 -32.43506 -32.37931 -30.74038 -29.39438 -28.05847 -26.52011 -25.47531 -24.48767 -23.31079 -22.92230 -21.81169 -20.19963 -19.93934 -18.60487 -17.74637 -16.77910 -16.04617 -15.59727 -15.55468 -15.43616 -15.40627 -14.86020 -14.80835 -14.58667 -14.22490 -13.91189 -13.79176 -13.68409 -13.11532 -13.08300 -12.89928 -12.60946 -12.58105 -12.50599 -12.35242 -12.04023 -11.94954 -11.68368 -11.61087 -11.45485 -11.40885 -11.17134 -11.07624 -11.04784 -11.02206 -10.76386 -10.74401 -10.47289 -9.80567 -9.37134 -9.32514 -9.07080 -8.68561 -8.45967 -8.22034 -6.50025 -6.21870 -3.92338 1.82755 2.95700 3.07820 3.21584 3.25708 3.29705 3.60555 3.79742 4.19817 4.36354 4.48134 4.56943 4.58720 4.68874 4.85676 4.87510 4.88625 4.94967 4.97273 5.02500 5.05587 5.09630 5.13187 5.23280 5.30298 5.32315 5.37098 5.46958 5.48488 5.52684 5.57062 5.63802 5.65393 5.71911 5.72997 5.75141 5.78076 5.83347 5.86706 5.96458 6.03842 6.10333 6.11314 6.28573 6.34661 6.44716 6.69169 6.75357 7.07414 7.58225 7.60127 8.34675 8.59489 9.23329 10.85494 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.001999 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.300914 B =14001.627108 C =15731.756427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.089 4.089 6 C 0.063 3.937 7 N -0.684 5.684 8 C 0.095 3.905 9 H 0.077 0.923 10 C -0.168 4.168 11 C 0.113 3.887 12 N -0.617 5.617 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.116 3.884 26 C -0.091 4.091 27 H 0.085 0.915 28 C -0.144 4.144 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.342 0.658 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.268 0.732 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.055 0.945 51 H 0.057 0.943 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 -27.404 -11.749 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.178 4.178 4 C -0.174 4.174 5 C -0.127 4.127 6 C -0.066 4.066 7 N -0.314 5.314 8 C -0.015 4.015 9 H 0.096 0.904 10 C -0.207 4.207 11 C -0.011 4.011 12 N -0.353 5.353 13 C 0.323 3.677 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.008 4.008 26 C -0.111 4.111 27 H 0.103 0.897 28 C -0.201 4.201 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.680 -26.179 -11.196 29.766 hybrid contribution -3.302 -0.758 -0.356 3.406 sum 5.379 -26.937 -11.552 29.799 Atomic orbital electron populations 1.21717 0.95131 1.01667 1.02114 1.20642 0.96195 0.94341 1.02198 1.22894 0.98424 0.97313 0.99208 1.22810 0.98587 0.96962 0.99062 1.20665 1.02040 0.92739 0.97253 1.21920 0.97711 0.89435 0.97544 1.60603 1.63367 1.02554 1.04872 1.21545 0.92856 0.95347 0.91723 0.90450 1.22702 0.98202 1.00916 0.98908 1.21596 0.91945 0.91729 0.95817 1.48075 1.06493 1.09671 1.71108 1.20294 0.91111 0.80811 0.75466 1.90689 1.50325 1.50397 1.47656 1.23554 0.94840 1.07003 1.04717 1.85406 1.09065 0.98370 1.90532 1.22856 0.91455 0.98883 1.55163 0.91008 1.24987 0.99135 0.94867 0.94570 1.70017 1.35133 1.01194 1.43872 0.86180 0.83222 0.77646 0.78526 1.20269 1.20739 1.19726 1.21627 0.83034 1.00194 0.95917 1.21464 0.99483 0.95001 0.95119 0.89651 1.21794 1.02254 0.98237 0.97856 0.92579 0.92615 0.92602 0.91251 0.91692 0.87475 0.87409 0.91781 0.90186 0.91014 0.95133 0.83992 0.90594 0.91170 0.89255 0.91608 0.89444 0.89400 0.92185 0.92002 0.88625 0.92557 0.92433 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.15 0.37 -0.40 16 2 C -0.10 -0.52 6.38 -27.89 -0.18 -0.69 16 3 C -0.16 -0.99 9.12 -36.02 -0.33 -1.32 16 4 C -0.16 -0.97 9.12 -36.03 -0.33 -1.30 16 5 C -0.09 -0.56 5.92 -27.88 -0.17 -0.73 16 6 C 0.06 0.43 5.47 -3.82 -0.02 0.41 16 7 N -0.68 -5.25 5.81 -106.68 -0.62 -5.87 16 8 C 0.10 0.81 2.13 -67.67 -0.14 0.66 16 9 H 0.08 0.65 7.80 -51.93 -0.40 0.25 16 10 C -0.17 -1.49 4.99 -26.61 -0.13 -1.62 16 11 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 12 N -0.62 -8.63 2.41 -172.71 -0.42 -9.04 16 13 C 0.54 10.18 7.72 -10.99 -0.08 10.09 16 14 O -0.52 -11.82 15.28 5.55 0.08 -11.74 16 15 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.12 1.40 5.83 -3.68 -0.02 1.38 16 26 C -0.09 -0.90 2.91 -90.50 -0.26 -1.16 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 C -0.14 -1.59 8.46 37.16 0.31 -1.28 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 34 H 0.11 0.65 7.84 -52.49 -0.41 0.23 16 35 H 0.11 0.63 7.84 -52.48 -0.41 0.21 16 36 H 0.06 0.40 7.79 -51.93 -0.40 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 39 H 0.03 0.22 7.41 -51.93 -0.38 -0.17 16 40 H 0.34 2.59 7.76 -39.29 -0.30 2.28 16 41 H 0.08 0.76 6.33 -51.93 -0.33 0.43 16 42 H 0.07 0.55 7.42 -51.93 -0.39 0.16 16 43 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 46 H 0.09 1.67 7.94 -51.91 -0.41 1.25 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.10 1.36 7.01 -51.93 -0.36 1.00 16 50 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 51 H 0.06 0.56 7.25 -51.93 -0.38 0.18 16 52 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 419.16 15.07 6.32 6.32 Total: -1.00 -32.88 419.16 -11.16 -44.04 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -9.38 Total: -0.17 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.65 Total: -10.61 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.30 Total: -40.35 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.88 -11.16 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482415331.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.488 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds